Wall clock time and date at job start Tue Mar 31 2020 11:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47098 * 2 1 4 4 H 1.08998 * 109.46944 * 55.00361 * 3 2 1 5 5 C 1.50701 * 109.46960 * 174.99930 * 3 2 1 6 6 H 1.08001 * 120.00001 * 119.99580 * 5 3 2 7 7 C 1.37881 * 120.00117 * 300.00095 * 5 3 2 8 8 N 1.31510 * 120.00051 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99854 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47383 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47222 * 119.99806 * 9 7 5 12 12 H 1.48501 * 109.47205 * 239.99918 * 9 7 5 13 13 N 1.46498 * 109.47133 * 295.00018 * 3 2 1 14 14 C 1.34777 * 120.00048 * 84.99784 * 13 3 2 15 15 O 1.21581 * 119.99717 * 0.02562 * 14 13 3 16 16 N 1.34776 * 120.00033 * 180.02562 * 14 13 3 17 17 C 1.39611 * 120.00004 * 185.45988 * 16 14 13 18 18 C 1.38730 * 120.14767 * 34.63079 * 17 16 14 19 19 C 1.38137 * 120.07084 * 180.02562 * 18 17 16 20 20 C 1.38474 * 120.37548 * 0.02562 * 19 18 17 21 21 C 1.37916 * 120.29959 * 0.02562 * 20 19 18 22 22 C 1.39557 * 119.92355 * 359.97438 * 21 20 19 23 23 C 1.47675 * 120.18727 * 180.02562 * 22 21 20 24 24 N 1.31288 * 125.73854 * 174.77738 * 23 22 21 25 25 C 1.34205 * 108.63944 * 179.87228 * 24 23 22 26 26 C 1.34496 * 107.84807 * 0.38717 * 25 24 23 27 27 O 1.34450 * 125.73373 * 355.08383 * 23 22 21 28 28 H 1.08997 * 109.46835 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47089 * 299.99751 * 1 2 3 30 30 H 1.08992 * 109.47322 * 60.00145 * 1 2 3 31 31 H 1.08998 * 109.47342 * 239.99818 * 2 1 3 32 32 H 1.09002 * 109.47314 * 119.99806 * 2 1 3 33 33 H 0.97002 * 120.00331 * 180.02562 * 8 7 5 34 34 H 0.97003 * 119.99610 * 265.00505 * 13 3 2 35 35 H 0.96995 * 119.99980 * 5.45284 * 16 14 13 36 36 H 1.08004 * 119.96685 * 0.04863 * 18 17 16 37 37 H 1.08000 * 119.81432 * 180.28177 * 19 18 17 38 38 H 1.08001 * 119.85246 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.03495 * 179.97438 * 21 20 19 40 40 H 1.07994 * 126.07331 * 180.15306 * 25 24 23 41 41 H 1.08005 * 126.35918 * 179.78143 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4063 0.3366 2.1729 9 14 6.0049 0.8812 1.3818 10 1 6.5988 1.5463 0.1942 11 1 6.3990 1.6167 2.6101 12 1 6.4971 -0.5175 1.4629 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3412 2.6326 -0.4318 16 7 0.0783 3.2665 -2.5188 17 6 -1.1351 3.9520 -2.6014 18 6 -1.6248 4.6371 -1.4989 19 6 -2.8258 5.3144 -1.5823 20 6 -3.5490 5.3147 -2.7632 21 6 -3.0771 4.6378 -3.8683 22 6 -1.8652 3.9494 -3.7980 23 6 -1.3542 3.2232 -4.9779 24 7 -0.1892 2.6239 -5.0642 25 6 -0.0796 2.0730 -6.2831 26 6 -1.2059 2.3505 -6.9637 27 8 -2.0013 3.0695 -6.1463 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0613 2.9498 34 1 2.2719 2.1231 -1.9978 35 1 0.6647 3.2237 -3.2902 36 1 -1.0662 4.6412 -0.5745 37 1 -3.2010 5.8501 -0.7229 38 1 -4.4873 5.8466 -2.8189 39 1 -3.6449 4.6405 -4.7870 40 1 0.7647 1.5103 -6.6530 41 1 -1.4315 2.0525 -7.9770 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889017255.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:12 Heat of formation + Delta-G solvation = 28.874765 kcal Electronic energy + Delta-G solvation = -26091.435537 eV Core-core repulsion = 22359.539056 eV Total energy + Delta-G solvation = -3731.896481 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.38074 -40.23879 -38.48087 -35.49349 -34.93798 -34.01814 -32.37839 -32.23913 -30.92018 -29.54350 -28.74930 -26.79180 -23.86714 -23.59089 -22.88048 -22.03244 -21.18673 -20.45930 -19.44055 -18.07223 -18.06118 -17.29508 -16.72285 -16.09570 -15.92800 -15.45928 -15.01311 -14.81050 -14.34888 -14.26921 -13.95205 -13.56578 -13.32014 -13.22360 -13.01633 -12.62632 -12.15067 -11.73593 -11.55185 -11.52890 -11.42900 -11.22871 -10.92974 -10.83129 -10.75912 -10.28394 -10.14627 -10.09000 -9.80817 -9.56712 -9.31961 -8.99604 -8.48759 -8.48064 -7.95939 -7.63683 -6.10540 -4.19364 0.59299 1.41399 1.73531 2.51196 2.66980 3.24369 3.25885 3.33569 3.37429 3.66198 3.84830 4.08167 4.34465 4.71265 4.83660 4.93236 4.99192 5.03811 5.21206 5.27527 5.37539 5.48429 5.65039 5.72900 5.92105 6.07254 6.28399 6.34411 6.45226 6.51140 6.53542 6.67757 6.73628 7.08108 7.12422 7.20739 7.41050 7.42621 7.50390 7.57182 7.68036 7.90781 8.05324 8.21635 8.77691 8.89770 9.30047 9.49470 10.94888 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016134 B = 0.003679 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.025459 B = 7609.882639 C = 8547.858174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.715 5.715 14 C 0.693 3.307 15 O -0.579 6.579 16 N -0.686 5.686 17 C 0.242 3.758 18 C -0.128 4.128 19 C -0.074 4.074 20 C -0.153 4.153 21 C -0.067 4.067 22 C -0.078 4.078 23 C 0.255 3.745 24 N -0.487 5.487 25 C -0.031 4.031 26 C -0.085 4.085 27 O -0.198 6.198 28 H 0.020 0.980 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.264 0.736 34 H 0.387 0.613 35 H 0.417 0.583 36 H 0.148 0.852 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.187 0.813 41 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.949 7.417 -16.197 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.184 3.816 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.366 5.366 14 C 0.393 3.607 15 O -0.457 6.457 16 N -0.336 5.336 17 C 0.141 3.859 18 C -0.148 4.148 19 C -0.093 4.093 20 C -0.172 4.172 21 C -0.087 4.087 22 C -0.083 4.083 23 C 0.052 3.948 24 N -0.217 5.217 25 C -0.170 4.170 26 C -0.155 4.155 27 O -0.085 6.085 28 H 0.039 0.961 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.219 0.781 35 H 0.258 0.742 36 H 0.166 0.834 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.204 0.796 41 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -11.050 7.186 -14.625 19.689 hybrid contribution 1.152 -0.369 -1.451 1.889 sum -9.898 6.816 -16.076 20.072 Atomic orbital electron populations 1.21810 0.98292 0.97848 1.01293 1.21957 0.92688 0.99907 1.02184 1.18732 0.94012 0.88903 0.79932 0.93154 1.21270 0.90672 1.38891 1.06266 0.92025 1.24870 0.98570 0.94819 0.95380 1.69906 1.34998 1.37676 1.09339 0.86400 0.84897 0.77740 0.78091 1.19767 1.20893 1.20911 1.45819 1.12996 1.58523 1.19219 1.16112 0.83643 0.78768 0.82134 1.90894 1.51709 1.64658 1.38415 1.43253 1.19832 1.54580 1.15936 1.17369 0.85849 0.90435 0.92261 1.21275 0.97855 0.96673 0.99032 1.21245 0.93723 0.96722 0.97599 1.20926 1.01029 1.02365 0.92929 1.20923 0.93205 0.95382 0.99175 1.17057 0.97109 1.05187 0.88941 1.23814 0.87147 0.98012 0.85787 1.70381 1.17527 1.13357 1.20448 1.23367 1.00131 1.03361 0.90171 1.25050 0.91962 1.00555 0.97945 1.84509 1.44264 1.57108 1.22626 0.96087 0.93131 0.94286 0.95123 0.88270 0.92634 0.78093 0.74173 0.83428 0.85256 0.85460 0.85294 0.79641 0.76752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.19 5.45 -26.73 -0.15 -3.34 16 3 C 0.29 7.26 2.24 -69.08 -0.15 7.10 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.53 -14.09 8.73 -34.44 -0.30 -14.39 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.66 11.29 55.43 0.63 -24.04 16 9 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.72 -15.35 5.03 -59.81 -0.30 -15.65 16 14 C 0.69 14.45 6.85 -86.92 -0.60 13.85 16 15 O -0.58 -13.57 11.26 5.29 0.06 -13.51 16 16 N -0.69 -11.93 4.79 -14.02 -0.07 -12.00 16 17 C 0.24 3.89 6.26 -83.41 -0.52 3.37 16 18 C -0.13 -1.96 8.64 -39.44 -0.34 -2.30 16 19 C -0.07 -0.87 10.03 -39.53 -0.40 -1.27 16 20 C -0.15 -1.59 10.03 -39.61 -0.40 -1.99 16 21 C -0.07 -0.76 9.71 -39.21 -0.38 -1.14 16 22 C -0.08 -1.10 5.89 -104.83 -0.62 -1.72 16 23 C 0.26 3.58 7.86 -13.93 -0.11 3.47 16 24 N -0.49 -6.93 8.46 -11.75 -0.10 -7.03 16 25 C -0.03 -0.34 11.87 -17.84 -0.21 -0.55 16 26 C -0.08 -0.78 12.17 29.41 0.36 -0.42 16 27 O -0.20 -2.38 10.53 3.86 0.04 -2.34 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 30 H 0.04 0.91 5.64 -51.93 -0.29 0.62 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.39 7.44 8.56 -40.82 -0.35 7.09 16 35 H 0.42 6.73 6.36 -40.82 -0.26 6.47 16 36 H 0.15 2.55 6.52 -52.48 -0.34 2.21 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.13 1.19 7.91 -52.49 -0.42 0.77 16 40 H 0.19 1.46 8.06 -52.49 -0.42 1.03 16 41 H 0.22 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 342.68 15.07 5.16 5.16 Total: -1.00 -31.61 342.68 -8.04 -39.64 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -4.85 Total: 14.61 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -3.59 Total: -0.46 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 0.16 Total: -58.72 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.10 Total: -15.84 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.61 -8.04 -39.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889017255.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.517 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds