Wall clock time and date at job start Tue Mar 31 2020 11:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47098 * 2 1 4 4 H 1.08998 * 109.46944 * 55.00361 * 3 2 1 5 5 C 1.50701 * 109.46960 * 174.99930 * 3 2 1 6 6 H 1.08001 * 120.00001 * 119.99580 * 5 3 2 7 7 C 1.37881 * 120.00117 * 300.00095 * 5 3 2 8 8 N 1.31510 * 120.00051 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99854 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47383 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47222 * 119.99806 * 9 7 5 12 12 H 1.48501 * 109.47205 * 239.99918 * 9 7 5 13 13 N 1.46498 * 109.47133 * 295.00018 * 3 2 1 14 14 C 1.34777 * 120.00048 * 84.99784 * 13 3 2 15 15 O 1.21581 * 119.99717 * 0.02562 * 14 13 3 16 16 N 1.34776 * 120.00033 * 180.02562 * 14 13 3 17 17 C 1.39611 * 120.00004 * 185.45988 * 16 14 13 18 18 C 1.38730 * 120.14767 * 34.63079 * 17 16 14 19 19 C 1.38137 * 120.07084 * 180.02562 * 18 17 16 20 20 C 1.38474 * 120.37548 * 0.02562 * 19 18 17 21 21 C 1.37916 * 120.29959 * 0.02562 * 20 19 18 22 22 C 1.39557 * 119.92355 * 359.97438 * 21 20 19 23 23 C 1.47675 * 120.18727 * 180.02562 * 22 21 20 24 24 N 1.31288 * 125.73854 * 174.77738 * 23 22 21 25 25 C 1.34205 * 108.63944 * 179.87228 * 24 23 22 26 26 C 1.34496 * 107.84807 * 0.38717 * 25 24 23 27 27 O 1.34450 * 125.73373 * 355.08383 * 23 22 21 28 28 H 1.08997 * 109.46835 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47089 * 299.99751 * 1 2 3 30 30 H 1.08992 * 109.47322 * 60.00145 * 1 2 3 31 31 H 1.08998 * 109.47342 * 239.99818 * 2 1 3 32 32 H 1.09002 * 109.47314 * 119.99806 * 2 1 3 33 33 H 0.97002 * 120.00331 * 180.02562 * 8 7 5 34 34 H 0.97003 * 119.99610 * 265.00505 * 13 3 2 35 35 H 0.96995 * 119.99980 * 5.45284 * 16 14 13 36 36 H 1.08004 * 119.96685 * 0.04863 * 18 17 16 37 37 H 1.08000 * 119.81432 * 180.28177 * 19 18 17 38 38 H 1.08001 * 119.85246 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.03495 * 179.97438 * 21 20 19 40 40 H 1.07994 * 126.07331 * 180.15306 * 25 24 23 41 41 H 1.08005 * 126.35918 * 179.78143 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4063 0.3366 2.1729 9 14 6.0049 0.8812 1.3818 10 1 6.5988 1.5463 0.1942 11 1 6.3990 1.6167 2.6101 12 1 6.4971 -0.5175 1.4629 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3412 2.6326 -0.4318 16 7 0.0783 3.2665 -2.5188 17 6 -1.1351 3.9520 -2.6014 18 6 -1.6248 4.6371 -1.4989 19 6 -2.8258 5.3144 -1.5823 20 6 -3.5490 5.3147 -2.7632 21 6 -3.0771 4.6378 -3.8683 22 6 -1.8652 3.9494 -3.7980 23 6 -1.3542 3.2232 -4.9779 24 7 -0.1892 2.6239 -5.0642 25 6 -0.0796 2.0730 -6.2831 26 6 -1.2059 2.3505 -6.9637 27 8 -2.0013 3.0695 -6.1463 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0613 2.9498 34 1 2.2719 2.1231 -1.9978 35 1 0.6647 3.2237 -3.2902 36 1 -1.0662 4.6412 -0.5745 37 1 -3.2010 5.8501 -0.7229 38 1 -4.4873 5.8466 -2.8189 39 1 -3.6449 4.6405 -4.7870 40 1 0.7647 1.5103 -6.6530 41 1 -1.4315 2.0525 -7.9770 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889017255.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:11 Heat of formation + Delta-G solvation = 7.033514 kcal Electronic energy + Delta-G solvation = -26092.382645 eV Core-core repulsion = 22359.539056 eV Total energy + Delta-G solvation = -3732.843589 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.25699 -41.64334 -39.78185 -37.19353 -36.07027 -35.33505 -34.30677 -33.23987 -32.74478 -30.67925 -29.79273 -28.70240 -25.23253 -24.78306 -24.33061 -23.11088 -22.24069 -21.93448 -21.31278 -19.71607 -19.04342 -18.49820 -17.85075 -17.61961 -17.19155 -16.74286 -16.64208 -16.05797 -15.87912 -15.41724 -15.13128 -15.03408 -14.60013 -14.49381 -14.33147 -14.08053 -13.74900 -13.50895 -13.19714 -12.86143 -12.72213 -12.66979 -12.48109 -12.46004 -12.14469 -12.06960 -11.71385 -11.63286 -11.32828 -11.05751 -10.95776 -10.71453 -10.54302 -9.71428 -9.43742 -8.88467 -8.15822 -6.32731 -0.36623 0.37873 0.87159 1.44558 1.45372 1.57285 1.65644 1.76020 1.83084 2.22865 2.43005 2.87991 3.00351 3.13612 3.46621 3.83554 4.04215 4.09344 4.21853 4.38808 4.43861 4.47777 4.48694 4.55353 4.70713 4.78274 4.88145 4.97934 5.05425 5.16442 5.23761 5.32219 5.36909 5.43332 5.51994 5.53024 5.59549 5.64410 5.74570 5.86338 6.00971 6.16099 6.29478 6.68181 6.74679 7.23319 7.35285 7.70607 8.90028 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016134 B = 0.003679 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.025459 B = 7609.882639 C = 8547.858174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.297 3.703 4 H 0.003 0.997 5 C -0.548 4.548 6 H 0.069 0.931 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.971 3.029 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.278 1.278 13 N -0.715 5.715 14 C 0.694 3.306 15 O -0.610 6.610 16 N -0.675 5.675 17 C 0.202 3.798 18 C -0.150 4.150 19 C -0.072 4.072 20 C -0.133 4.133 21 C -0.064 4.064 22 C -0.080 4.080 23 C 0.226 3.774 24 N -0.513 5.513 25 C -0.060 4.060 26 C -0.058 4.058 27 O -0.200 6.200 28 H 0.042 0.958 29 H 0.029 0.971 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.266 0.734 34 H 0.398 0.602 35 H 0.421 0.579 36 H 0.116 0.884 37 H 0.154 0.846 38 H 0.170 0.830 39 H 0.157 0.843 40 H 0.209 0.791 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.945 7.912 -19.032 23.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.159 4.159 3 C 0.193 3.807 4 H 0.021 0.979 5 C -0.586 4.586 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.796 3.204 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.204 1.204 13 N -0.367 5.367 14 C 0.395 3.605 15 O -0.490 6.490 16 N -0.326 5.326 17 C 0.103 3.897 18 C -0.171 4.171 19 C -0.091 4.091 20 C -0.152 4.152 21 C -0.083 4.083 22 C -0.085 4.085 23 C 0.023 3.977 24 N -0.244 5.244 25 C -0.198 4.198 26 C -0.128 4.128 27 O -0.086 6.086 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.232 0.768 35 H 0.263 0.737 36 H 0.134 0.866 37 H 0.172 0.828 38 H 0.188 0.812 39 H 0.175 0.825 40 H 0.226 0.774 41 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -12.078 7.719 -17.522 22.638 hybrid contribution 1.333 -0.480 -0.712 1.586 sum -10.745 7.239 -18.234 22.368 Atomic orbital electron populations 1.21621 0.97147 0.98793 1.00047 1.21806 0.93581 0.99366 1.01197 1.18305 0.93568 0.88752 0.80031 0.97882 1.21570 0.91236 1.39059 1.06758 0.91283 1.25737 1.03306 0.94277 0.94913 1.70048 1.36977 1.38263 1.09843 0.85309 0.79063 0.77848 0.78162 1.18697 1.20848 1.20360 1.45487 1.13780 1.58936 1.18457 1.16161 0.83016 0.78605 0.82762 1.90864 1.52511 1.65781 1.39866 1.42960 1.20740 1.54355 1.14569 1.17617 0.86099 0.92222 0.93763 1.21181 0.99463 0.98592 0.97870 1.21550 0.92328 0.95863 0.99388 1.21400 1.01683 1.00697 0.91417 1.21334 0.92136 0.94214 1.00659 1.17242 0.97722 1.05218 0.88290 1.23760 0.87731 0.99572 0.86618 1.70304 1.18071 1.13731 1.22340 1.23891 1.01974 1.04426 0.89531 1.26030 0.90476 0.97497 0.98775 1.84509 1.44525 1.57343 1.22255 0.93858 0.95211 0.94621 0.94459 0.90596 0.92521 0.76812 0.73666 0.86609 0.82784 0.81227 0.82497 0.77404 0.71924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 8.51 71.98 0.61 -5.10 16 2 C -0.12 -6.19 5.45 30.60 0.17 -6.03 16 3 C 0.30 15.78 2.24 44.25 0.10 15.88 16 4 H 0.00 0.20 7.58 -2.39 -0.02 0.19 16 5 C -0.55 -29.69 8.73 25.60 0.22 -29.47 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.02 0.98 5.29 84.66 0.45 1.42 16 8 N -0.91 -52.57 11.29 21.45 0.24 -52.32 16 9 Si 0.97 42.61 29.54 68.60 2.03 44.63 16 10 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 13 N -0.71 -32.14 5.03 -461.41 -2.32 -34.45 16 14 C 0.69 30.60 6.85 179.05 1.23 31.83 16 15 O -0.61 -30.54 11.26 -3.97 -0.04 -30.59 16 16 N -0.67 -24.68 4.79 -316.54 -1.52 -26.20 16 17 C 0.20 6.72 6.26 38.49 0.24 6.97 16 18 C -0.15 -4.81 8.64 22.36 0.19 -4.62 16 19 C -0.07 -1.63 10.03 22.30 0.22 -1.41 16 20 C -0.13 -2.35 10.03 22.25 0.22 -2.12 16 21 C -0.06 -1.29 9.71 22.51 0.22 -1.07 16 22 C -0.08 -2.23 5.89 -20.00 -0.12 -2.34 16 23 C 0.23 6.14 7.86 87.27 0.69 6.82 16 24 N -0.51 -14.39 8.46 -305.12 -2.58 -16.97 16 25 C -0.06 -1.18 11.87 83.47 0.99 -0.19 16 26 C -0.06 -0.88 12.17 66.96 0.82 -0.07 16 27 O -0.20 -4.31 10.53 -9.11 -0.10 -4.41 16 28 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.03 1.51 7.84 -2.39 -0.02 1.49 16 30 H 0.03 1.71 5.64 -2.39 -0.01 1.70 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.08 4.29 5.95 -2.39 -0.01 4.28 16 33 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.40 15.84 8.56 -92.71 -0.79 15.05 16 35 H 0.42 14.21 6.36 -92.71 -0.59 13.62 16 36 H 0.12 4.39 6.52 -2.91 -0.02 4.37 16 37 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 39 H 0.16 2.28 7.91 -2.91 -0.02 2.26 16 40 H 0.21 2.85 8.06 -2.91 -0.02 2.83 16 41 H 0.27 1.01 8.06 -2.91 -0.02 0.99 16 Total: -1.00 -72.86 342.68 1.67 -71.19 By element: Atomic # 1 Polarization: 38.91 SS G_CDS: -0.29 Total: 38.62 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 6.25 Total: 10.50 kcal Atomic # 7 Polarization: -123.78 SS G_CDS: -6.17 Total: -129.95 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.14 Total: -34.99 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -72.86 1.67 -71.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889017255.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.227 kcal (2) G-P(sol) polarization free energy of solvation -72.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds