Wall clock time and date at job start Tue Mar 31 2020 12:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00158 * 2 1 4 4 N 1.46498 * 109.47180 * 124.99375 * 3 2 1 5 5 C 1.34771 * 120.00349 * 270.00489 * 4 3 2 6 6 O 1.21356 * 120.00299 * 3.90457 * 5 4 3 7 7 C 1.49378 * 119.99967 * 183.90399 * 5 4 3 8 8 O 1.21358 * 119.99698 * 4.12446 * 7 5 4 9 9 N 1.34777 * 119.99908 * 184.12103 * 7 5 4 10 10 C 1.39109 * 119.99952 * 174.98647 * 9 7 5 11 11 C 1.39706 * 119.57858 * 185.78758 * 10 9 7 12 12 C 1.38653 * 119.49098 * 179.97438 * 11 10 9 13 13 C 1.38338 * 118.67276 * 0.02562 * 12 11 10 14 14 C 1.40594 * 119.13821 * 359.97438 * 13 12 11 15 15 C 1.41343 * 119.78588 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00167 * 359.97438 * 15 14 13 17 17 C 1.40023 * 119.99752 * 180.02562 * 15 14 13 18 18 N 1.30745 * 120.00431 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99816 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47013 * 90.00202 * 19 17 15 21 21 H 1.48500 * 109.46977 * 210.00089 * 19 17 15 22 22 H 1.48495 * 109.47323 * 330.00096 * 19 17 15 23 23 N 1.31942 * 119.57809 * 5.51252 * 10 9 7 24 24 C 1.46508 * 119.99668 * 90.00184 * 4 3 2 25 25 C 1.53001 * 117.49728 * 1.40037 * 24 4 3 26 26 C 1.53003 * 117.49619 * 292.77903 * 24 4 3 27 27 H 1.08001 * 120.00176 * 179.97438 * 1 2 3 28 28 H 1.07996 * 119.99947 * 359.72872 * 1 2 3 29 29 H 1.08001 * 119.99673 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47261 * 244.99934 * 3 2 1 31 31 H 1.09004 * 109.46889 * 4.99933 * 3 2 1 32 32 H 0.97006 * 119.99817 * 354.98480 * 9 7 5 33 33 H 1.08002 * 120.25626 * 359.97438 * 11 10 9 34 34 H 1.08004 * 120.66263 * 180.02562 * 12 11 10 35 35 H 1.08006 * 120.43281 * 179.97438 * 13 12 11 36 36 H 0.97000 * 120.00225 * 180.02562 * 18 17 15 37 37 H 1.08999 * 115.54941 * 147.11194 * 24 4 3 38 38 H 1.09000 * 117.49818 * 359.97438 * 25 24 4 39 39 H 1.09000 * 117.49927 * 145.01974 * 25 24 4 40 40 H 1.08998 * 117.49459 * 214.97383 * 26 24 4 41 41 H 1.08997 * 117.50095 * 359.97438 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5935 1.8223 2.3214 6 8 1.4430 2.1759 2.4760 7 6 3.5663 1.9305 3.4498 8 8 4.7333 1.6477 3.2742 9 7 3.1478 2.3423 4.6630 10 6 4.0292 2.3438 5.7392 11 6 3.5573 2.6556 7.0167 12 6 4.4373 2.6560 8.0881 13 6 5.7654 2.3456 7.8564 14 6 6.1789 2.0405 6.5478 15 6 7.5326 1.7220 6.2954 16 1 8.2457 1.7140 7.1064 17 6 7.9494 1.4180 4.9937 18 7 7.0864 1.4291 4.0115 19 14 9.7387 0.9978 4.6600 20 1 9.9374 -0.4672 4.7996 21 1 10.0967 1.4167 3.2810 22 1 10.6044 1.7097 5.6341 23 7 5.2991 2.0453 5.5414 24 6 4.3589 0.8256 0.9695 25 6 4.7625 0.3124 -0.4142 26 6 4.5319 -0.6757 0.7310 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0044 29 1 1.8499 -0.9353 0.0004 30 1 2.6213 1.4026 -0.9313 31 1 1.3586 2.1316 0.0896 32 1 2.2320 2.6377 4.7857 33 1 2.5151 2.8945 7.1685 34 1 4.0929 2.8938 9.0838 35 1 6.4754 2.3379 8.6703 36 1 7.3751 1.2181 3.1098 37 1 5.1215 1.3324 1.5609 38 1 4.0122 0.3511 -1.2038 39 1 5.7909 0.4817 -0.7335 40 1 5.4086 -1.1565 1.1650 41 1 3.6301 -1.2868 0.6950 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890193460.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:10 Heat of formation + Delta-G solvation = 62.559213 kcal Electronic energy + Delta-G solvation = -26558.055916 eV Core-core repulsion = 22827.620103 eV Total energy + Delta-G solvation = -3730.435814 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.51472 -38.86380 -37.49577 -37.23744 -34.61507 -34.33278 -33.14673 -32.27896 -30.39569 -29.23821 -27.22679 -25.70803 -24.06605 -22.45435 -22.10930 -21.60629 -20.78363 -19.88360 -19.28599 -17.99622 -17.05877 -16.69248 -16.08731 -15.70009 -15.30082 -14.80691 -14.75254 -14.54816 -14.46145 -13.87373 -13.69658 -13.41405 -13.15068 -12.89575 -12.83149 -12.14119 -12.05171 -12.00974 -11.63733 -11.22045 -11.12807 -11.01908 -10.81261 -10.79069 -10.70271 -10.53981 -10.42443 -9.98913 -9.81846 -9.63442 -9.10909 -8.72231 -8.48499 -8.04533 -7.31862 -7.07331 -6.24484 -4.46627 1.86577 2.02716 2.78722 2.81552 3.06932 3.12036 3.14742 3.22227 3.83988 3.86917 4.00026 4.02784 4.69210 4.83591 4.84967 4.93098 5.01015 5.10362 5.14983 5.23903 5.55694 5.72088 5.75742 5.95489 5.99163 6.05493 6.19387 6.23669 6.41954 6.43541 6.48093 6.56220 6.61668 6.76659 6.78360 7.16601 7.28877 7.44430 7.51755 7.75070 7.83685 8.02675 8.14928 8.36095 8.62222 8.92360 9.00583 10.12609 10.38824 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013237 B = 0.005092 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.806966 B = 5497.350718 C = 7368.949224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.177 4.177 3 C 0.135 3.865 4 N -0.559 5.559 5 C 0.513 3.487 6 O -0.530 6.530 7 C 0.471 3.529 8 O -0.380 6.380 9 N -0.637 5.637 10 C 0.368 3.632 11 C -0.348 4.348 12 C -0.036 4.036 13 C -0.300 4.300 14 C 0.272 3.728 15 C -0.424 4.424 16 H 0.083 0.917 17 C 0.061 3.939 18 N -0.663 5.663 19 Si 0.897 3.103 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.264 1.264 23 N -0.473 5.473 24 C 0.061 3.939 25 C -0.194 4.194 26 C -0.187 4.187 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.411 0.589 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.270 0.730 37 H 0.182 0.818 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.437 -2.265 -10.022 12.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.196 4.196 3 C 0.013 3.987 4 N -0.290 5.290 5 C 0.296 3.704 6 O -0.407 6.407 7 C 0.248 3.752 8 O -0.244 6.244 9 N -0.286 5.286 10 C 0.130 3.870 11 C -0.374 4.374 12 C -0.060 4.060 13 C -0.324 4.324 14 C 0.147 3.853 15 C -0.454 4.454 16 H 0.101 0.899 17 C -0.167 4.167 18 N -0.282 5.282 19 Si 0.721 3.279 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.188 1.188 23 N -0.192 5.192 24 C -0.042 4.042 25 C -0.232 4.232 26 C -0.226 4.226 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.128 0.872 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.247 0.753 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.198 0.802 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.881 -2.535 -11.212 12.912 hybrid contribution -0.182 -0.053 0.676 0.702 sum -6.063 -2.588 -10.536 12.429 Atomic orbital electron populations 1.23869 0.95808 1.01992 0.99029 1.23325 0.96366 0.98682 1.01214 1.20692 0.92356 0.96326 0.89326 1.47278 1.12228 1.59717 1.09804 1.20813 0.88154 0.77552 0.83837 1.90687 1.19243 1.48575 1.82198 1.20054 0.89122 0.82172 0.83853 1.90991 1.14777 1.39623 1.78971 1.43006 1.14435 1.63832 1.07278 1.18544 0.89963 0.94451 0.84031 1.20518 0.99188 1.25088 0.92592 1.20579 0.93385 0.95737 0.96301 1.21656 0.95620 1.16889 0.98195 1.18355 0.92652 0.88224 0.86067 1.19579 0.92783 1.38952 0.94123 0.89899 1.26130 0.98744 0.95256 0.96568 1.70319 1.32972 1.25008 0.99885 0.86504 0.83467 0.79456 0.78458 1.19648 1.20273 1.18757 1.68636 0.97842 1.20401 1.32310 1.23159 0.84965 0.96083 1.00004 1.23356 1.02843 1.04955 0.92056 1.23340 1.03564 0.93410 1.02280 0.88435 0.88243 0.87242 0.89109 0.89266 0.75327 0.88751 0.88392 0.88402 0.91834 0.80162 0.88741 0.87868 0.87849 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 14.32 29.01 0.42 -1.36 16 2 C -0.18 -2.01 9.67 -36.02 -0.35 -2.36 16 3 C 0.13 1.62 5.34 -5.19 -0.03 1.60 16 4 N -0.56 -8.39 2.78 -168.00 -0.47 -8.86 16 5 C 0.51 9.16 7.73 -11.62 -0.09 9.07 16 6 O -0.53 -9.87 16.10 5.49 0.09 -9.79 16 7 C 0.47 9.71 7.75 -11.62 -0.09 9.62 16 8 O -0.38 -8.64 8.87 5.49 0.05 -8.60 16 9 N -0.64 -13.23 5.37 -11.83 -0.06 -13.30 16 10 C 0.37 8.89 7.42 -155.09 -1.15 7.74 16 11 C -0.35 -7.78 9.96 -38.88 -0.39 -8.17 16 12 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 13 C -0.30 -7.35 9.83 -38.66 -0.38 -7.73 16 14 C 0.27 7.37 6.55 -85.00 -0.56 6.81 16 15 C -0.42 -11.16 9.14 -37.73 -0.34 -11.51 16 16 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 17 C 0.06 1.53 5.50 -17.35 -0.10 1.43 16 18 N -0.66 -16.86 8.99 55.55 0.50 -16.36 16 19 Si 0.90 18.26 29.56 -169.99 -5.02 13.24 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 23 N -0.47 -12.73 5.73 -10.28 -0.06 -12.79 16 24 C 0.06 0.90 5.50 -67.92 -0.37 0.53 16 25 C -0.19 -2.20 9.73 -26.73 -0.26 -2.46 16 26 C -0.19 -2.46 10.32 -26.73 -0.28 -2.73 16 27 H 0.10 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.10 1.02 7.84 -52.49 -0.41 0.61 16 29 H 0.11 1.21 6.38 -52.49 -0.33 0.88 16 30 H 0.09 0.90 6.05 -51.93 -0.31 0.58 16 31 H 0.09 1.11 7.13 -51.93 -0.37 0.74 16 32 H 0.41 7.39 8.17 -40.82 -0.33 7.05 16 33 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 34 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 35 H 0.10 2.22 8.06 -52.48 -0.42 1.79 16 36 H 0.27 6.29 8.29 -40.82 -0.34 5.96 16 37 H 0.18 3.22 5.22 -52.08 -0.27 2.95 16 38 H 0.09 0.92 6.14 -51.93 -0.32 0.60 16 39 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.09 1.13 6.37 -51.93 -0.33 0.80 16 LS Contribution 345.59 15.07 5.21 5.21 Total: -1.00 -29.68 345.59 -8.90 -38.59 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -4.77 Total: 13.39 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -4.36 Total: -0.73 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.09 Total: -51.31 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: 0.14 Total: -18.38 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.02 Total: 13.24 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.68 -8.90 -38.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890193460.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.148 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds