Wall clock time and date at job start Tue Mar 31 2020 12:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00158 * 2 1 4 4 N 1.46498 * 109.47180 * 124.99375 * 3 2 1 5 5 C 1.34771 * 120.00349 * 270.00489 * 4 3 2 6 6 O 1.21356 * 120.00299 * 3.90457 * 5 4 3 7 7 C 1.49378 * 119.99967 * 183.90399 * 5 4 3 8 8 O 1.21358 * 119.99698 * 4.12446 * 7 5 4 9 9 N 1.34777 * 119.99908 * 184.12103 * 7 5 4 10 10 C 1.39109 * 119.99952 * 174.98647 * 9 7 5 11 11 C 1.39706 * 119.57858 * 185.78758 * 10 9 7 12 12 C 1.38653 * 119.49098 * 179.97438 * 11 10 9 13 13 C 1.38338 * 118.67276 * 0.02562 * 12 11 10 14 14 C 1.40594 * 119.13821 * 359.97438 * 13 12 11 15 15 C 1.41343 * 119.78588 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00167 * 359.97438 * 15 14 13 17 17 C 1.40023 * 119.99752 * 180.02562 * 15 14 13 18 18 N 1.30745 * 120.00431 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99816 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47013 * 90.00202 * 19 17 15 21 21 H 1.48500 * 109.46977 * 210.00089 * 19 17 15 22 22 H 1.48495 * 109.47323 * 330.00096 * 19 17 15 23 23 N 1.31942 * 119.57809 * 5.51252 * 10 9 7 24 24 C 1.46508 * 119.99668 * 90.00184 * 4 3 2 25 25 C 1.53001 * 117.49728 * 1.40037 * 24 4 3 26 26 C 1.53003 * 117.49619 * 292.77903 * 24 4 3 27 27 H 1.08001 * 120.00176 * 179.97438 * 1 2 3 28 28 H 1.07996 * 119.99947 * 359.72872 * 1 2 3 29 29 H 1.08001 * 119.99673 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47261 * 244.99934 * 3 2 1 31 31 H 1.09004 * 109.46889 * 4.99933 * 3 2 1 32 32 H 0.97006 * 119.99817 * 354.98480 * 9 7 5 33 33 H 1.08002 * 120.25626 * 359.97438 * 11 10 9 34 34 H 1.08004 * 120.66263 * 180.02562 * 12 11 10 35 35 H 1.08006 * 120.43281 * 179.97438 * 13 12 11 36 36 H 0.97000 * 120.00225 * 180.02562 * 18 17 15 37 37 H 1.08999 * 115.54941 * 147.11194 * 24 4 3 38 38 H 1.09000 * 117.49818 * 359.97438 * 25 24 4 39 39 H 1.09000 * 117.49927 * 145.01974 * 25 24 4 40 40 H 1.08998 * 117.49459 * 214.97383 * 26 24 4 41 41 H 1.08997 * 117.50095 * 359.97438 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5935 1.8223 2.3214 6 8 1.4430 2.1759 2.4760 7 6 3.5663 1.9305 3.4498 8 8 4.7333 1.6477 3.2742 9 7 3.1478 2.3423 4.6630 10 6 4.0292 2.3438 5.7392 11 6 3.5573 2.6556 7.0167 12 6 4.4373 2.6560 8.0881 13 6 5.7654 2.3456 7.8564 14 6 6.1789 2.0405 6.5478 15 6 7.5326 1.7220 6.2954 16 1 8.2457 1.7140 7.1064 17 6 7.9494 1.4180 4.9937 18 7 7.0864 1.4291 4.0115 19 14 9.7387 0.9978 4.6600 20 1 9.9374 -0.4672 4.7996 21 1 10.0967 1.4167 3.2810 22 1 10.6044 1.7097 5.6341 23 7 5.2991 2.0453 5.5414 24 6 4.3589 0.8256 0.9695 25 6 4.7625 0.3124 -0.4142 26 6 4.5319 -0.6757 0.7310 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0044 29 1 1.8499 -0.9353 0.0004 30 1 2.6213 1.4026 -0.9313 31 1 1.3586 2.1316 0.0896 32 1 2.2320 2.6377 4.7857 33 1 2.5151 2.8945 7.1685 34 1 4.0929 2.8938 9.0838 35 1 6.4754 2.3379 8.6703 36 1 7.3751 1.2181 3.1098 37 1 5.1215 1.3324 1.5609 38 1 4.0122 0.3511 -1.2038 39 1 5.7909 0.4817 -0.7335 40 1 5.4086 -1.1565 1.1650 41 1 3.6301 -1.2868 0.6950 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890193460.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:09 Heat of formation + Delta-G solvation = 46.196112 kcal Electronic energy + Delta-G solvation = -26558.765474 eV Core-core repulsion = 22827.620103 eV Total energy + Delta-G solvation = -3731.145371 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.93586 -40.46883 -39.01838 -38.64476 -36.06494 -35.58246 -34.91365 -33.42101 -32.25271 -31.06192 -28.38035 -27.51249 -25.54222 -23.70448 -23.38929 -23.19997 -22.32149 -20.98521 -20.65337 -19.62904 -18.55973 -18.20655 -17.65627 -16.98119 -16.57366 -16.42681 -16.28575 -16.07213 -15.68757 -15.53907 -15.10967 -14.88542 -14.61322 -14.36180 -13.93792 -13.80287 -13.74149 -13.11636 -12.87242 -12.73509 -12.63451 -12.55548 -12.33476 -12.15780 -12.07350 -11.79713 -11.75334 -11.59340 -11.57606 -10.89938 -10.54464 -10.19110 -9.91682 -9.66101 -9.12294 -8.90240 -8.06932 -6.40488 0.35687 1.01988 1.04065 1.27970 1.44437 1.54398 1.57052 1.59278 2.29192 2.35252 2.45169 2.92341 3.00158 3.31741 3.81508 3.93433 4.03123 4.05385 4.09353 4.17603 4.26966 4.33607 4.64853 4.68240 4.78731 4.82357 4.92344 4.93105 4.95337 5.02439 5.10531 5.21676 5.25756 5.36971 5.63589 5.64772 5.72598 5.76322 5.91228 6.02277 6.13298 6.28291 6.49898 6.70931 6.83122 7.05887 7.31959 8.26159 8.57317 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013237 B = 0.005092 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.806966 B = 5497.350718 C = 7368.949224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.190 4.190 3 C 0.132 3.868 4 N -0.545 5.545 5 C 0.516 3.484 6 O -0.543 6.543 7 C 0.460 3.540 8 O -0.403 6.403 9 N -0.634 5.634 10 C 0.348 3.652 11 C -0.345 4.345 12 C -0.033 4.033 13 C -0.323 4.323 14 C 0.238 3.762 15 C -0.461 4.461 16 H 0.085 0.915 17 C 0.018 3.982 18 N -0.689 5.689 19 Si 0.973 3.027 20 H -0.268 1.268 21 H -0.269 1.269 22 H -0.261 1.261 23 N -0.501 5.501 24 C 0.031 3.969 25 C -0.157 4.157 26 C -0.188 4.188 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.422 0.578 33 H 0.127 0.873 34 H 0.138 0.862 35 H 0.107 0.893 36 H 0.274 0.726 37 H 0.148 0.852 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.130 -2.760 -11.382 13.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.209 4.209 3 C 0.011 3.989 4 N -0.276 5.276 5 C 0.298 3.702 6 O -0.421 6.421 7 C 0.238 3.762 8 O -0.267 6.267 9 N -0.283 5.283 10 C 0.110 3.890 11 C -0.370 4.370 12 C -0.057 4.057 13 C -0.346 4.346 14 C 0.113 3.887 15 C -0.491 4.491 16 H 0.103 0.897 17 C -0.208 4.208 18 N -0.308 5.308 19 Si 0.794 3.206 20 H -0.193 1.193 21 H -0.194 1.194 22 H -0.185 1.185 23 N -0.221 5.221 24 C -0.072 4.072 25 C -0.194 4.194 26 C -0.226 4.226 27 H 0.131 0.869 28 H 0.119 0.881 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.103 0.897 32 H 0.260 0.740 33 H 0.145 0.855 34 H 0.155 0.845 35 H 0.125 0.875 36 H 0.085 0.915 37 H 0.165 0.835 38 H 0.138 0.862 39 H 0.133 0.867 40 H 0.111 0.889 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.607 -3.030 -12.597 14.543 hybrid contribution -0.090 0.120 1.102 1.113 sum -6.697 -2.910 -11.494 13.617 Atomic orbital electron populations 1.24066 0.95674 1.02854 0.97390 1.23299 0.96682 0.98295 1.02653 1.20948 0.92147 0.96828 0.88937 1.47278 1.12768 1.58073 1.09439 1.20219 0.87324 0.78506 0.84107 1.90674 1.19144 1.49818 1.82493 1.20682 0.89578 0.81493 0.84448 1.91023 1.15984 1.40150 1.79571 1.43017 1.14529 1.63840 1.06945 1.18990 0.89892 0.94375 0.85736 1.20942 1.00837 1.23353 0.91875 1.21017 0.92411 0.94105 0.98151 1.21848 0.97146 1.17963 0.97669 1.18833 0.93417 0.89082 0.87355 1.19893 0.93127 1.40837 0.95265 0.89670 1.26907 1.03147 0.94902 0.95873 1.70449 1.34920 1.25217 1.00193 0.85356 0.77748 0.79069 0.78423 1.19262 1.19404 1.18495 1.68602 0.99030 1.21519 1.32960 1.22891 0.84251 0.97133 1.02962 1.23453 1.04113 1.01125 0.90758 1.23327 1.03530 0.92415 1.03319 0.86881 0.88148 0.86788 0.86471 0.89663 0.73978 0.85509 0.84473 0.87480 0.91492 0.83483 0.86237 0.86712 0.88911 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 14.32 67.78 0.97 -2.05 16 2 C -0.19 -3.89 9.67 25.65 0.25 -3.64 16 3 C 0.13 2.91 5.34 85.63 0.46 3.36 16 4 N -0.55 -15.99 2.78 -803.79 -2.24 -18.23 16 5 C 0.52 18.48 7.73 87.25 0.67 19.16 16 6 O -0.54 -19.99 16.10 -3.27 -0.05 -20.05 16 7 C 0.46 19.51 7.75 87.25 0.68 20.18 16 8 O -0.40 -19.13 8.87 -3.27 -0.03 -19.16 16 9 N -0.63 -26.75 5.37 -309.69 -1.66 -28.41 16 10 C 0.35 17.07 7.42 133.30 0.99 18.06 16 11 C -0.34 -15.08 9.96 22.72 0.23 -14.86 16 12 C -0.03 -1.42 10.15 22.39 0.23 -1.20 16 13 C -0.32 -16.03 9.83 22.87 0.22 -15.81 16 14 C 0.24 13.36 6.55 40.20 0.26 13.63 16 15 C -0.46 -25.17 9.14 23.47 0.21 -24.96 16 16 H 0.09 4.39 7.85 -2.91 -0.02 4.36 16 17 C 0.02 0.90 5.50 85.29 0.47 1.37 16 18 N -0.69 -36.36 8.99 21.84 0.20 -36.17 16 19 Si 0.97 38.31 29.56 68.60 2.03 40.34 16 20 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 21 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 22 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 23 N -0.50 -27.94 5.73 -186.43 -1.07 -29.01 16 24 C 0.03 0.90 5.50 44.99 0.25 1.15 16 25 C -0.16 -3.18 9.73 30.60 0.30 -2.89 16 26 C -0.19 -4.74 10.32 30.60 0.32 -4.42 16 27 H 0.11 1.74 8.06 -2.91 -0.02 1.72 16 28 H 0.10 1.85 7.84 -2.91 -0.02 1.83 16 29 H 0.11 2.23 6.38 -2.91 -0.02 2.22 16 30 H 0.12 1.93 6.05 -2.39 -0.01 1.92 16 31 H 0.09 1.98 7.13 -2.39 -0.02 1.96 16 32 H 0.42 15.19 8.17 -92.70 -0.76 14.43 16 33 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 34 H 0.14 4.78 8.06 -2.91 -0.02 4.76 16 35 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 36 H 0.27 13.26 8.29 -92.71 -0.77 12.50 16 37 H 0.15 5.48 5.22 -4.84 -0.03 5.46 16 38 H 0.12 1.84 6.14 -2.39 -0.01 1.83 16 39 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.10 2.31 6.37 -2.39 -0.02 2.30 16 Total: -1.00 -66.52 345.59 3.98 -62.53 By element: Atomic # 1 Polarization: 40.74 SS G_CDS: 0.31 Total: 41.06 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 6.50 Total: 7.10 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -4.77 Total: -111.82 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -0.08 Total: -39.21 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -66.52 3.98 -62.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890193460.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.727 kcal (2) G-P(sol) polarization free energy of solvation -66.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds