Wall clock time and date at job start Tue Mar 31 2020 11:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09006 * 109.47109 * 146.46250 * 3 2 1 5 5 C 1.53001 * 109.47687 * 26.46288 * 3 2 1 6 6 C 1.52996 * 109.47576 * 174.99918 * 5 3 2 7 7 C 1.53001 * 109.47065 * 180.02562 * 6 5 3 8 8 N 1.46501 * 109.47042 * 266.46050 * 3 2 1 9 9 C 1.34777 * 120.00007 * 275.00342 * 8 3 2 10 10 O 1.21354 * 119.99886 * 359.97438 * 9 8 3 11 11 C 1.49372 * 119.99705 * 180.02562 * 9 8 3 12 12 O 1.21356 * 120.00142 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99705 * 179.97438 * 11 9 8 14 14 C 1.39107 * 119.99869 * 174.85442 * 13 11 9 15 15 C 1.39712 * 119.57740 * 185.38511 * 14 13 11 16 16 C 1.38654 * 119.48853 * 179.72807 * 15 14 13 17 17 C 1.38340 * 118.67517 * 0.53307 * 16 15 14 18 18 C 1.40593 * 119.13705 * 359.72971 * 17 16 15 19 19 C 1.41342 * 119.78812 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99976 * 359.97438 * 19 18 17 21 21 C 1.40026 * 119.99687 * 179.97438 * 19 18 17 22 22 N 1.30735 * 120.00595 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99795 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47104 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46850 * 119.99701 * 23 21 19 26 26 H 1.48495 * 109.47264 * 240.00255 * 23 21 19 27 27 N 1.31938 * 119.58093 * 5.65803 * 14 13 11 28 28 H 4.18736 * 15.03824 * 0.02562 * 4 2 1 29 29 H 1.08999 * 109.46591 * 54.99879 * 5 3 2 30 30 H 1.09000 * 109.47082 * 295.00129 * 5 3 2 31 31 H 1.09003 * 109.46946 * 59.99876 * 6 5 3 32 32 H 1.09000 * 109.47087 * 300.00208 * 6 5 3 33 33 H 1.09001 * 109.46490 * 180.02562 * 7 6 5 34 34 H 1.08996 * 109.46718 * 299.99974 * 7 6 5 35 35 H 1.08999 * 109.46969 * 60.00042 * 7 6 5 36 36 H 0.96998 * 119.99705 * 95.00878 * 8 3 2 37 37 H 0.97007 * 120.00006 * 354.85068 * 13 11 9 38 38 H 1.07998 * 120.25475 * 0.02562 * 15 14 13 39 39 H 1.08003 * 120.66264 * 180.24289 * 16 15 14 40 40 H 1.08008 * 120.43282 * 179.75284 * 17 16 15 41 41 H 0.97005 * 120.00607 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0089 0.8574 -0.5678 5 6 3.1567 -1.2904 -0.6428 6 6 4.6814 -1.2353 -0.7561 7 6 5.1920 -2.5262 -1.3995 8 7 3.1342 0.0861 1.3786 9 6 3.2623 1.2881 1.9748 10 8 2.9736 2.2995 1.3695 11 6 3.7607 1.3752 3.3802 12 8 4.0507 0.3638 3.9850 13 7 3.8893 2.5771 3.9763 14 6 4.2504 2.6533 5.3175 15 6 4.2714 3.8955 5.9566 16 6 4.6261 3.9686 7.2950 17 6 4.9613 2.8014 7.9576 18 6 4.9264 1.5826 7.2575 19 6 5.2658 0.3817 7.9211 20 1 5.5512 0.4022 8.9625 21 6 5.2320 -0.8347 7.2283 22 7 4.8870 -0.8596 5.9675 23 14 5.6812 -2.4218 8.1051 24 1 6.0331 -2.1248 9.5170 25 1 4.5240 -3.3518 8.0690 26 1 6.8430 -3.0504 7.4267 27 7 4.5739 1.5522 5.9684 28 1 -1.0500 -0.0005 0.0009 29 1 2.7221 -1.3980 -1.6366 30 1 2.8687 -2.1419 -0.0262 31 1 5.1160 -1.1277 0.2377 32 1 4.9694 -0.3839 -1.3728 33 1 6.2783 -2.4870 -1.4798 34 1 4.9039 -3.3778 -0.7832 35 1 4.7574 -2.6334 -2.3934 36 1 3.3654 -0.7223 1.8622 37 1 3.7301 3.3891 3.4700 38 1 4.0086 4.7913 5.4136 39 1 4.6448 4.9184 7.8088 40 1 5.2459 2.8259 8.9992 41 1 4.8640 -1.7022 5.4874 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890213239.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:31 Heat of formation + Delta-G solvation = 35.909752 kcal Electronic energy + Delta-G solvation = -25608.062359 eV Core-core repulsion = 21876.470937 eV Total energy + Delta-G solvation = -3731.591421 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.32988 -38.81909 -37.39840 -36.77849 -34.41390 -33.67859 -33.10021 -32.47387 -30.39094 -29.33625 -29.05366 -25.84289 -25.03477 -23.74051 -21.77137 -21.32668 -21.11721 -19.65582 -18.63418 -18.18935 -17.14961 -16.73987 -16.06593 -15.50746 -15.27833 -14.91745 -14.69861 -14.51212 -14.47518 -13.98980 -13.71142 -13.42634 -13.26498 -12.90725 -12.75669 -12.21202 -12.04731 -12.00525 -11.82671 -11.31433 -11.22660 -11.13851 -10.99474 -10.87947 -10.68602 -10.61793 -10.53001 -10.24928 -9.96453 -9.81800 -9.40170 -9.10922 -9.00892 -8.04301 -7.34462 -7.06911 -6.23003 -4.45950 1.87246 2.34109 2.72118 2.80150 3.06679 3.13390 3.13665 3.17089 3.22239 3.91430 4.01026 4.09438 4.18398 4.65163 4.73183 4.84739 4.85920 4.98549 5.19139 5.30431 5.45707 5.54829 5.66423 5.86032 5.88423 5.96074 5.97165 6.05822 6.11184 6.28605 6.42650 6.56668 6.74239 6.78893 7.14450 7.23630 7.47505 7.50150 7.51876 7.75561 7.87842 8.02577 8.14959 8.36053 8.61647 8.92126 9.00595 10.13526 10.40428 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.004161 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.206746 B = 6727.671793 C = 8307.709099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.200 4.200 3 C 0.255 3.745 4 H 0.111 0.889 5 C -0.120 4.120 6 C -0.128 4.128 7 C -0.151 4.151 8 N -0.698 5.698 9 C 0.512 3.488 10 O -0.529 6.529 11 C 0.467 3.533 12 O -0.385 6.385 13 N -0.638 5.638 14 C 0.368 3.632 15 C -0.348 4.348 16 C -0.036 4.036 17 C -0.300 4.300 18 C 0.271 3.729 19 C -0.424 4.424 20 H 0.084 0.916 21 C 0.060 3.940 22 N -0.662 5.662 23 Si 0.897 3.103 24 H -0.262 1.262 25 H -0.275 1.275 26 H -0.275 1.275 27 N -0.474 5.474 28 H 0.218 0.782 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.417 0.583 37 H 0.411 0.589 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.168 -2.881 -13.380 14.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.201 4.201 3 C 0.151 3.849 4 H 0.129 0.871 5 C -0.158 4.158 6 C -0.166 4.166 7 C -0.209 4.209 8 N -0.352 5.352 9 C 0.293 3.707 10 O -0.405 6.405 11 C 0.244 3.756 12 O -0.248 6.248 13 N -0.287 5.287 14 C 0.130 3.870 15 C -0.374 4.374 16 C -0.060 4.060 17 C -0.324 4.324 18 C 0.146 3.854 19 C -0.454 4.454 20 H 0.102 0.898 21 C -0.169 4.169 22 N -0.281 5.281 23 Si 0.722 3.278 24 H -0.186 1.186 25 H -0.200 1.200 26 H -0.200 1.200 27 N -0.194 5.194 28 H 0.235 0.765 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.254 0.746 37 H 0.247 0.753 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.186 -3.948 -14.001 14.891 hybrid contribution -0.152 0.289 0.719 0.790 sum -3.337 -3.658 -13.281 14.174 Atomic orbital electron populations 1.24948 0.95903 1.00848 0.98544 1.23425 0.94652 1.00395 1.01613 1.17860 0.83295 1.00409 0.83357 0.87142 1.21881 0.96518 0.95811 1.01596 1.21571 0.94293 0.98564 1.02149 1.21752 1.01096 0.97489 1.00527 1.45814 1.65661 1.09554 1.14213 1.20911 0.77793 0.83657 0.88292 1.90701 1.48911 1.35077 1.65774 1.20069 0.82987 0.85990 0.86588 1.91212 1.39206 1.32753 1.61628 1.42987 1.67273 1.08456 1.09967 1.18542 0.93778 0.91240 0.83430 1.20516 1.24658 0.95319 0.96925 1.20585 0.95416 0.96733 0.93289 1.21654 1.16689 0.93899 1.00115 1.18372 0.88189 0.91884 0.86951 1.19627 1.38124 0.90131 0.97544 0.89797 1.26160 0.95091 1.00543 0.95106 1.70311 1.24352 1.26627 1.06837 0.86435 0.78748 0.81904 0.80742 1.18560 1.20045 1.20017 1.68642 1.18040 1.23896 1.08786 0.76548 0.89857 0.90603 0.91044 0.91603 0.92518 0.92554 0.92827 0.74606 0.75307 0.88719 0.88355 0.88367 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 19.25 29.55 0.57 -1.55 16 2 C -0.20 -2.56 12.84 -37.12 -0.48 -3.03 16 3 C 0.26 3.00 2.41 -70.72 -0.17 2.83 16 4 H 0.11 1.34 7.58 -51.93 -0.39 0.95 16 5 C -0.12 -1.06 4.71 -26.73 -0.13 -1.18 16 6 C -0.13 -1.13 5.82 -26.73 -0.16 -1.28 16 7 C -0.15 -1.16 9.91 37.16 0.37 -0.80 16 8 N -0.70 -9.78 4.49 -57.00 -0.26 -10.03 16 9 C 0.51 8.82 7.83 -11.62 -0.09 8.73 16 10 O -0.53 -9.69 16.15 5.49 0.09 -9.61 16 11 C 0.47 9.63 7.84 -11.62 -0.09 9.54 16 12 O -0.39 -9.09 12.24 5.49 0.07 -9.02 16 13 N -0.64 -13.31 5.37 -11.83 -0.06 -13.37 16 14 C 0.37 9.00 7.42 -155.09 -1.15 7.85 16 15 C -0.35 -7.86 9.96 -38.88 -0.39 -8.24 16 16 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 17 C -0.30 -7.43 9.83 -38.66 -0.38 -7.81 16 18 C 0.27 7.46 6.55 -85.00 -0.56 6.91 16 19 C -0.42 -11.35 9.14 -37.73 -0.34 -11.70 16 20 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 21 C 0.06 1.52 5.50 -17.35 -0.10 1.42 16 22 N -0.66 -17.47 8.99 55.55 0.50 -16.97 16 23 Si 0.90 18.62 29.56 -169.99 -5.02 13.59 16 24 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 25 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 26 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 27 N -0.47 -13.05 5.74 -10.28 -0.06 -13.11 16 28 H 0.22 1.70 7.80 -54.09 -0.42 1.28 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.73 7.75 -51.93 -0.40 0.32 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.42 5.62 8.07 -40.82 -0.33 5.29 16 37 H 0.41 7.37 8.18 -40.82 -0.33 7.03 16 38 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 40 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 41 H 0.27 6.58 8.29 -40.82 -0.34 6.24 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -31.97 361.57 -8.02 -39.99 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.23 Total: 12.62 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -3.49 Total: 0.48 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.12 Total: -53.49 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.16 Total: -18.63 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.97 -8.02 -39.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890213239.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.896 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds