Wall clock time and date at job start Tue Mar 31 2020 11:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09006 * 109.47109 * 146.46250 * 3 2 1 5 5 C 1.53001 * 109.47687 * 26.46288 * 3 2 1 6 6 C 1.52996 * 109.47576 * 174.99918 * 5 3 2 7 7 C 1.53001 * 109.47065 * 180.02562 * 6 5 3 8 8 N 1.46501 * 109.47042 * 266.46050 * 3 2 1 9 9 C 1.34777 * 120.00007 * 275.00342 * 8 3 2 10 10 O 1.21354 * 119.99886 * 359.97438 * 9 8 3 11 11 C 1.49372 * 119.99705 * 180.02562 * 9 8 3 12 12 O 1.21356 * 120.00142 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99705 * 179.97438 * 11 9 8 14 14 C 1.39107 * 119.99869 * 174.85442 * 13 11 9 15 15 C 1.39712 * 119.57740 * 185.38511 * 14 13 11 16 16 C 1.38654 * 119.48853 * 179.72807 * 15 14 13 17 17 C 1.38340 * 118.67517 * 0.53307 * 16 15 14 18 18 C 1.40593 * 119.13705 * 359.72971 * 17 16 15 19 19 C 1.41342 * 119.78812 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99976 * 359.97438 * 19 18 17 21 21 C 1.40026 * 119.99687 * 179.97438 * 19 18 17 22 22 N 1.30735 * 120.00595 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99795 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47104 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46850 * 119.99701 * 23 21 19 26 26 H 1.48495 * 109.47264 * 240.00255 * 23 21 19 27 27 N 1.31938 * 119.58093 * 5.65803 * 14 13 11 28 28 H 4.18736 * 15.03824 * 0.02562 * 4 2 1 29 29 H 1.08999 * 109.46591 * 54.99879 * 5 3 2 30 30 H 1.09000 * 109.47082 * 295.00129 * 5 3 2 31 31 H 1.09003 * 109.46946 * 59.99876 * 6 5 3 32 32 H 1.09000 * 109.47087 * 300.00208 * 6 5 3 33 33 H 1.09001 * 109.46490 * 180.02562 * 7 6 5 34 34 H 1.08996 * 109.46718 * 299.99974 * 7 6 5 35 35 H 1.08999 * 109.46969 * 60.00042 * 7 6 5 36 36 H 0.96998 * 119.99705 * 95.00878 * 8 3 2 37 37 H 0.97007 * 120.00006 * 354.85068 * 13 11 9 38 38 H 1.07998 * 120.25475 * 0.02562 * 15 14 13 39 39 H 1.08003 * 120.66264 * 180.24289 * 16 15 14 40 40 H 1.08008 * 120.43282 * 179.75284 * 17 16 15 41 41 H 0.97005 * 120.00607 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0089 0.8574 -0.5678 5 6 3.1567 -1.2904 -0.6428 6 6 4.6814 -1.2353 -0.7561 7 6 5.1920 -2.5262 -1.3995 8 7 3.1342 0.0861 1.3786 9 6 3.2623 1.2881 1.9748 10 8 2.9736 2.2995 1.3695 11 6 3.7607 1.3752 3.3802 12 8 4.0507 0.3638 3.9850 13 7 3.8893 2.5771 3.9763 14 6 4.2504 2.6533 5.3175 15 6 4.2714 3.8955 5.9566 16 6 4.6261 3.9686 7.2950 17 6 4.9613 2.8014 7.9576 18 6 4.9264 1.5826 7.2575 19 6 5.2658 0.3817 7.9211 20 1 5.5512 0.4022 8.9625 21 6 5.2320 -0.8347 7.2283 22 7 4.8870 -0.8596 5.9675 23 14 5.6812 -2.4218 8.1051 24 1 6.0331 -2.1248 9.5170 25 1 4.5240 -3.3518 8.0690 26 1 6.8430 -3.0504 7.4267 27 7 4.5739 1.5522 5.9684 28 1 -1.0500 -0.0005 0.0009 29 1 2.7221 -1.3980 -1.6366 30 1 2.8687 -2.1419 -0.0262 31 1 5.1160 -1.1277 0.2377 32 1 4.9694 -0.3839 -1.3728 33 1 6.2783 -2.4870 -1.4798 34 1 4.9039 -3.3778 -0.7832 35 1 4.7574 -2.6334 -2.3934 36 1 3.3654 -0.7223 1.8622 37 1 3.7301 3.3891 3.4700 38 1 4.0086 4.7913 5.4136 39 1 4.6448 4.9184 7.8088 40 1 5.2459 2.8259 8.9992 41 1 4.8640 -1.7022 5.4874 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890213239.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:30 Heat of formation + Delta-G solvation = 16.473154 kcal Electronic energy + Delta-G solvation = -25608.905193 eV Core-core repulsion = 21876.470937 eV Total energy + Delta-G solvation = -3732.434255 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.80665 -40.42833 -39.05352 -37.93061 -36.12553 -35.00267 -34.49148 -33.55924 -32.27193 -31.09483 -30.05058 -27.66257 -26.34009 -24.88870 -23.50830 -22.87194 -22.08157 -21.19112 -20.06620 -19.44683 -18.79774 -18.16551 -17.61440 -16.84815 -16.55081 -16.46032 -16.29230 -15.83578 -15.62472 -15.55495 -15.09886 -14.76712 -14.68129 -14.60178 -13.85879 -13.77708 -13.49735 -12.95051 -12.90106 -12.74453 -12.60532 -12.59425 -12.55602 -12.31926 -12.02159 -11.74460 -11.61789 -11.59662 -11.57019 -11.13992 -10.92741 -10.64051 -10.58193 -9.93918 -9.20785 -8.92776 -8.08879 -6.42685 0.33511 1.01456 1.14629 1.26683 1.43063 1.53872 1.56694 1.80198 1.92612 2.27746 2.34674 2.76032 2.97851 3.29794 3.48575 3.83394 3.98778 4.01310 4.15295 4.32414 4.38271 4.59869 4.66665 4.72164 4.81364 4.85207 4.94071 4.95027 4.98302 5.06539 5.09594 5.24662 5.26511 5.33233 5.44528 5.62663 5.70180 5.89097 5.95670 6.13947 6.28380 6.52392 6.59167 6.69516 6.81681 7.03767 7.27030 8.24616 8.55517 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.004161 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.206746 B = 6727.671793 C = 8307.709099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.241 4.241 3 C 0.254 3.746 4 H 0.107 0.893 5 C -0.110 4.110 6 C -0.128 4.128 7 C -0.149 4.149 8 N -0.683 5.683 9 C 0.522 3.478 10 O -0.541 6.541 11 C 0.461 3.539 12 O -0.418 6.418 13 N -0.633 5.633 14 C 0.347 3.653 15 C -0.343 4.343 16 C -0.033 4.033 17 C -0.322 4.322 18 C 0.237 3.763 19 C -0.461 4.461 20 H 0.087 0.913 21 C 0.015 3.985 22 N -0.694 5.694 23 Si 0.976 3.024 24 H -0.257 1.257 25 H -0.270 1.270 26 H -0.269 1.269 27 N -0.505 5.505 28 H 0.248 0.752 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.419 0.581 37 H 0.424 0.576 38 H 0.129 0.871 39 H 0.139 0.861 40 H 0.108 0.892 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.850 -2.985 -14.307 15.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.242 4.242 3 C 0.151 3.849 4 H 0.125 0.875 5 C -0.147 4.147 6 C -0.165 4.165 7 C -0.206 4.206 8 N -0.336 5.336 9 C 0.303 3.697 10 O -0.418 6.418 11 C 0.239 3.761 12 O -0.282 6.282 13 N -0.283 5.283 14 C 0.109 3.891 15 C -0.368 4.368 16 C -0.057 4.057 17 C -0.345 4.345 18 C 0.112 3.888 19 C -0.491 4.491 20 H 0.105 0.895 21 C -0.211 4.211 22 N -0.313 5.313 23 Si 0.797 3.203 24 H -0.180 1.180 25 H -0.195 1.195 26 H -0.194 1.194 27 N -0.225 5.225 28 H 0.265 0.735 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.257 0.743 37 H 0.262 0.738 38 H 0.147 0.853 39 H 0.157 0.843 40 H 0.127 0.873 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.880 -4.033 -14.967 15.979 hybrid contribution -0.015 0.453 0.933 1.038 sum -3.895 -3.579 -14.034 14.998 Atomic orbital electron populations 1.25809 0.96852 0.99419 0.96726 1.23750 0.95363 1.01839 1.03257 1.18081 0.83398 1.01840 0.81608 0.87514 1.21853 0.96358 0.94211 1.02301 1.21558 0.94257 0.99435 1.01289 1.21736 1.01125 0.96678 1.01111 1.45830 1.64235 1.08426 1.15115 1.20201 0.78127 0.84579 0.86786 1.90695 1.49970 1.35572 1.65569 1.20683 0.82125 0.85436 0.87859 1.91207 1.40458 1.33685 1.62876 1.42981 1.66866 1.09393 1.09015 1.18997 0.93798 0.91593 0.84726 1.20959 1.22780 0.95820 0.97233 1.21043 0.93641 0.97673 0.93361 1.21854 1.17697 0.94084 1.00833 1.18862 0.88989 0.93336 0.87656 1.19945 1.39936 0.91199 0.98053 0.89478 1.26979 0.94684 1.03603 0.95829 1.70455 1.25098 1.27564 1.08182 0.85257 0.78451 0.77115 0.79489 1.18025 1.19549 1.19413 1.68598 1.19109 1.25638 1.09183 0.73533 0.87866 0.90304 0.92907 0.91344 0.92589 0.92574 0.91477 0.74349 0.73774 0.85298 0.84291 0.87345 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 19.25 74.32 1.43 -2.13 16 2 C -0.24 -5.85 12.84 31.13 0.40 -5.45 16 3 C 0.25 5.77 2.41 43.19 0.10 5.88 16 4 H 0.11 2.52 7.58 -2.38 -0.02 2.50 16 5 C -0.11 -1.78 4.71 30.59 0.14 -1.64 16 6 C -0.13 -2.14 5.82 30.59 0.18 -1.96 16 7 C -0.15 -2.10 9.91 71.98 0.71 -1.38 16 8 N -0.68 -19.12 4.49 -452.62 -2.03 -21.15 16 9 C 0.52 18.08 7.83 87.24 0.68 18.76 16 10 O -0.54 -19.60 16.15 -3.26 -0.05 -19.65 16 11 C 0.46 19.40 7.84 87.24 0.68 20.09 16 12 O -0.42 -20.41 12.24 -3.26 -0.04 -20.45 16 13 N -0.63 -26.52 5.37 -309.70 -1.66 -28.18 16 14 C 0.35 17.07 7.42 133.31 0.99 18.05 16 15 C -0.34 -14.94 9.96 22.73 0.23 -14.71 16 16 C -0.03 -1.44 10.15 22.39 0.23 -1.21 16 17 C -0.32 -15.99 9.83 22.87 0.22 -15.77 16 18 C 0.24 13.41 6.55 40.20 0.26 13.67 16 19 C -0.46 -25.47 9.14 23.47 0.21 -25.25 16 20 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 21 C 0.01 0.76 5.50 85.29 0.47 1.23 16 22 N -0.69 -37.81 8.99 21.84 0.20 -37.61 16 23 Si 0.98 39.00 29.56 68.60 2.03 41.03 16 24 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 25 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 26 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 27 N -0.51 -28.57 5.74 -186.42 -1.07 -29.64 16 28 H 0.25 3.14 7.80 -4.42 -0.03 3.11 16 29 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.08 7.75 -2.39 -0.02 1.06 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.42 11.49 8.07 -92.71 -0.75 10.74 16 37 H 0.42 14.97 8.18 -92.70 -0.76 14.21 16 38 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 39 H 0.14 4.81 8.06 -2.91 -0.02 4.78 16 40 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 41 H 0.27 13.74 8.29 -92.70 -0.77 12.97 16 Total: -1.00 -70.67 361.57 3.89 -66.78 By element: Atomic # 1 Polarization: 41.13 SS G_CDS: -0.44 Total: 40.69 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 6.95 Total: 8.18 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -4.57 Total: -116.59 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -0.09 Total: -40.10 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -70.67 3.89 -66.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890213239.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.256 kcal (2) G-P(sol) polarization free energy of solvation -70.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds