Wall clock time and date at job start Tue Mar 31 2020 11:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21536 * 120.00196 * 359.97438 * 14 13 3 16 16 C 1.47997 * 119.99717 * 180.02562 * 14 13 3 17 17 C 1.40414 * 119.71849 * 359.72586 * 16 14 13 18 18 C 1.36074 * 120.78494 * 179.71012 * 17 16 14 19 19 C 1.40087 * 119.85894 * 0.55676 * 18 17 16 20 20 C 1.41577 * 121.89855 * 179.69729 * 19 18 17 21 21 O 1.35287 * 120.87599 * 0.05280 * 20 19 18 22 22 N 1.32323 * 118.25373 * 180.02562 * 20 19 18 23 23 C 1.32439 * 121.53264 * 0.02562 * 22 20 19 24 24 C 1.50698 * 118.53708 * 179.97438 * 23 22 20 25 25 N 1.31115 * 122.92517 * 359.97438 * 23 22 20 26 26 C 1.34118 * 120.44526 * 359.97438 * 25 23 22 27 27 C 1.38548 * 119.71743 * 179.97438 * 16 14 13 28 28 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 29 29 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 30 30 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 32 32 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 33 33 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 34 34 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 35 35 H 1.08007 * 119.60982 * 359.97438 * 17 16 14 36 36 H 1.08003 * 120.07382 * 180.27659 * 18 17 16 37 37 H 0.96691 * 113.99436 * 269.97513 * 21 20 19 38 38 H 1.08995 * 109.47294 * 270.02822 * 24 23 22 39 39 H 1.09002 * 109.46992 * 30.02398 * 24 23 22 40 40 H 1.09004 * 109.47608 * 150.01893 * 24 23 22 41 41 H 1.07998 * 120.31652 * 359.97438 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3409 2.6325 0.4323 16 6 0.0439 3.3263 2.6316 17 6 0.9433 3.3554 3.7094 18 6 0.6084 3.9633 4.8798 19 6 -0.6518 4.5587 5.0208 20 6 -1.0476 5.1970 6.2209 21 8 -0.2130 5.2556 7.2841 22 7 -2.2551 5.7354 6.2752 23 6 -3.0827 5.6859 5.2425 24 6 -4.4426 6.3208 5.3785 25 7 -2.7715 5.1089 4.1069 26 6 -1.5716 4.5325 3.9439 27 6 -1.2088 3.9076 2.7434 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.8770 0.4827 -2.1133 34 1 2.2720 2.1230 1.9979 35 1 1.9142 2.8935 3.6068 36 1 1.3108 3.9828 5.7000 37 1 -0.2977 4.5084 7.8920 38 1 -5.1508 5.5849 5.7592 39 1 -4.3839 7.1606 6.0709 40 1 -4.7769 6.6764 4.4038 41 1 -1.8988 3.8797 1.9131 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897400024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:24 Heat of formation + Delta-G solvation = -5.007763 kcal Electronic energy + Delta-G solvation = -25510.536221 eV Core-core repulsion = 21777.170483 eV Total energy + Delta-G solvation = -3733.365738 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.77370 -39.71866 -38.21998 -37.60355 -35.45599 -33.59238 -32.78691 -32.21716 -31.43018 -31.05830 -28.53810 -27.59625 -25.41006 -23.48865 -22.93369 -22.44847 -21.34318 -19.98971 -19.24282 -18.94973 -18.09303 -17.13689 -16.55224 -16.10415 -15.98036 -15.28580 -15.07707 -14.71939 -14.50179 -14.27456 -13.82261 -13.60754 -13.40732 -13.21381 -13.04205 -12.89163 -12.58113 -12.49269 -12.11036 -11.93473 -11.86879 -11.75279 -11.15229 -11.10769 -10.97771 -10.89023 -10.69066 -9.99158 -9.73363 -9.61352 -9.42231 -9.35762 -9.29591 -8.82174 -8.57624 -8.20245 -6.26906 -4.30289 -0.21088 0.23767 1.44676 2.33085 2.85059 3.19329 3.32083 3.35919 3.36609 3.46548 3.77872 3.85399 4.01364 4.26297 4.27044 4.49078 4.74608 4.80420 5.02733 5.05955 5.06683 5.24759 5.29136 5.39099 5.60014 5.69258 5.85366 5.90576 5.96307 5.96697 6.06343 6.11115 6.27365 6.58769 6.63678 6.67910 6.75705 6.88374 6.91015 7.13874 7.20298 7.41532 7.78383 8.02597 8.39262 8.65021 8.76144 9.33075 10.84953 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025817 B = 0.003019 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.307675 B = 9271.384196 C = 9987.025117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.052 0.948 5 C -0.538 4.538 6 H 0.081 0.919 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.259 1.259 12 H -0.294 1.294 13 N -0.689 5.689 14 C 0.541 3.459 15 O -0.536 6.536 16 C -0.077 4.077 17 C -0.095 4.095 18 C -0.074 4.074 19 C -0.169 4.169 20 C 0.408 3.592 21 O -0.468 6.468 22 N -0.544 5.544 23 C 0.338 3.662 24 C -0.085 4.085 25 N -0.503 5.503 26 C 0.168 3.832 27 C -0.045 4.045 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.268 0.732 34 H 0.395 0.605 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.412 0.588 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.634 5.832 16.671 22.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.184 1.184 12 H -0.221 1.221 13 N -0.337 5.337 14 C 0.325 3.675 15 O -0.414 6.414 16 C -0.083 4.083 17 C -0.113 4.113 18 C -0.094 4.094 19 C -0.175 4.175 20 C 0.207 3.793 21 O -0.276 6.276 22 N -0.270 5.270 23 C 0.070 3.930 24 C -0.143 4.143 25 N -0.219 5.219 26 C 0.041 3.959 27 C -0.065 4.065 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.230 0.770 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.273 0.727 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.698 6.624 15.592 22.428 hybrid contribution 0.842 -1.261 -0.070 1.518 sum -13.856 5.363 15.522 21.487 Atomic orbital electron populations 1.21888 0.96888 0.99211 1.02265 1.22299 0.94395 0.99771 1.01304 1.19234 0.95848 0.88592 0.82443 0.92993 1.21011 0.88411 1.40121 1.08029 0.90122 1.24825 0.94876 0.95066 0.97644 1.69861 1.08696 1.44280 1.29831 0.86913 0.80996 0.79980 0.80935 1.20168 1.18383 1.22096 1.46152 1.14295 1.55026 1.18233 1.18098 0.83119 0.79568 0.86683 1.90769 1.51461 1.59654 1.39562 1.20428 0.94388 0.98340 0.95165 1.21206 0.99832 0.98170 0.92139 1.20757 0.94298 0.95861 0.98523 1.19681 0.98150 1.03471 0.96239 1.19607 0.85740 0.87274 0.86692 1.84631 1.56407 1.50894 1.35713 1.67688 1.04030 1.21504 1.33744 1.22968 0.95716 0.91221 0.83100 1.20615 0.88680 1.00757 1.04270 1.68615 1.17876 1.11403 1.23994 1.18758 0.89029 0.94850 0.93226 1.21151 0.95762 0.93678 0.95932 0.93022 0.92750 0.94820 0.92581 0.92175 0.92192 0.77004 0.84031 0.83812 0.72736 0.89421 0.89513 0.89252 0.82516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.51 37.16 0.32 -2.51 16 2 C -0.14 -2.97 5.11 -26.73 -0.14 -3.10 16 3 C 0.24 5.48 1.83 -69.08 -0.13 5.36 16 4 H 0.05 1.31 6.63 -51.93 -0.34 0.97 16 5 C -0.54 -13.97 9.31 -34.44 -0.32 -14.29 16 6 H 0.08 2.19 7.98 -52.49 -0.42 1.77 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -25.75 13.96 55.43 0.77 -24.97 16 9 Si 0.88 21.19 24.41 -169.99 -4.15 17.04 16 10 H -0.27 -6.39 6.83 56.52 0.39 -6.01 16 11 H -0.26 -6.16 6.53 56.52 0.37 -5.79 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 N -0.69 -12.83 4.97 -55.83 -0.28 -13.11 16 14 C 0.54 9.73 6.34 -12.26 -0.08 9.65 16 15 O -0.54 -11.24 13.44 5.33 0.07 -11.17 16 16 C -0.08 -1.11 5.87 -104.96 -0.62 -1.72 16 17 C -0.09 -1.09 9.45 -39.54 -0.37 -1.46 16 18 C -0.07 -0.75 9.58 -39.67 -0.38 -1.13 16 19 C -0.17 -2.00 5.76 -106.63 -0.61 -2.61 16 20 C 0.41 4.45 7.89 -16.07 -0.13 4.32 16 21 O -0.47 -3.70 12.91 -17.55 -0.23 -3.93 16 22 N -0.54 -6.43 10.30 -10.38 -0.11 -6.54 16 23 C 0.34 3.96 7.62 -157.22 -1.20 2.76 16 24 C -0.08 -0.65 10.28 36.00 0.37 -0.28 16 25 N -0.50 -6.78 10.32 -8.81 -0.09 -6.87 16 26 C 0.17 2.29 6.61 -84.86 -0.56 1.73 16 27 C -0.05 -0.65 9.58 -38.76 -0.37 -1.02 16 28 H 0.05 0.98 5.64 -51.93 -0.29 0.69 16 29 H 0.05 1.12 7.84 -51.93 -0.41 0.71 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.26 3.22 -51.93 -0.17 1.10 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.40 6.32 6.52 -40.82 -0.27 6.06 16 35 H 0.14 1.38 6.34 -52.48 -0.33 1.05 16 36 H 0.14 1.03 7.70 -52.48 -0.40 0.62 16 37 H 0.41 1.02 9.06 45.56 0.41 1.44 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.16 2.33 7.61 -52.49 -0.40 1.93 16 LS Contribution 337.55 15.07 5.09 5.09 Total: -1.00 -33.31 337.55 -7.15 -40.46 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -3.92 Total: 6.23 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -4.31 Total: -2.23 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.30 Total: -51.49 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.15 Total: -15.10 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.15 Total: 17.04 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.31 -7.15 -40.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897400024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.451 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds