Wall clock time and date at job start Tue Mar 31 2020 11:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21536 * 120.00196 * 359.97438 * 14 13 3 16 16 C 1.47997 * 119.99717 * 180.02562 * 14 13 3 17 17 C 1.40414 * 119.71849 * 359.72586 * 16 14 13 18 18 C 1.36074 * 120.78494 * 179.71012 * 17 16 14 19 19 C 1.40087 * 119.85894 * 0.55676 * 18 17 16 20 20 C 1.41577 * 121.89855 * 179.69729 * 19 18 17 21 21 O 1.35287 * 120.87599 * 0.05280 * 20 19 18 22 22 N 1.32323 * 118.25373 * 180.02562 * 20 19 18 23 23 C 1.32439 * 121.53264 * 0.02562 * 22 20 19 24 24 C 1.50698 * 118.53708 * 179.97438 * 23 22 20 25 25 N 1.31115 * 122.92517 * 359.97438 * 23 22 20 26 26 C 1.34118 * 120.44526 * 359.97438 * 25 23 22 27 27 C 1.38548 * 119.71743 * 179.97438 * 16 14 13 28 28 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 29 29 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 30 30 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 32 32 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 33 33 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 34 34 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 35 35 H 1.08007 * 119.60982 * 359.97438 * 17 16 14 36 36 H 1.08003 * 120.07382 * 180.27659 * 18 17 16 37 37 H 0.96691 * 113.99436 * 269.97513 * 21 20 19 38 38 H 1.08995 * 109.47294 * 270.02822 * 24 23 22 39 39 H 1.09002 * 109.46992 * 30.02398 * 24 23 22 40 40 H 1.09004 * 109.47608 * 150.01893 * 24 23 22 41 41 H 1.07998 * 120.31652 * 359.97438 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3409 2.6325 0.4323 16 6 0.0439 3.3263 2.6316 17 6 0.9433 3.3554 3.7094 18 6 0.6084 3.9633 4.8798 19 6 -0.6518 4.5587 5.0208 20 6 -1.0476 5.1970 6.2209 21 8 -0.2130 5.2556 7.2841 22 7 -2.2551 5.7354 6.2752 23 6 -3.0827 5.6859 5.2425 24 6 -4.4426 6.3208 5.3785 25 7 -2.7715 5.1089 4.1069 26 6 -1.5716 4.5325 3.9439 27 6 -1.2088 3.9076 2.7434 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.8770 0.4827 -2.1133 34 1 2.2720 2.1230 1.9979 35 1 1.9142 2.8935 3.6068 36 1 1.3108 3.9828 5.7000 37 1 -0.2977 4.5084 7.8920 38 1 -5.1508 5.5849 5.7592 39 1 -4.3839 7.1606 6.0709 40 1 -4.7769 6.6764 4.4038 41 1 -1.8988 3.8797 1.9131 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897400024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:24 Heat of formation + Delta-G solvation = -31.882057 kcal Electronic energy + Delta-G solvation = -25511.701578 eV Core-core repulsion = 21777.170483 eV Total energy + Delta-G solvation = -3734.531095 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.66778 -41.10310 -38.97450 -38.64099 -37.14280 -34.62585 -34.31102 -33.70412 -32.67071 -32.04125 -29.70287 -29.06844 -26.53979 -24.61788 -24.31551 -23.57195 -22.67393 -21.57754 -20.26871 -19.96124 -19.09788 -18.57172 -17.76818 -17.65662 -17.10956 -16.60998 -16.28482 -16.16875 -15.60991 -15.25982 -15.15249 -14.98241 -14.59537 -14.31180 -14.17960 -13.98851 -13.75555 -13.64598 -13.62685 -13.25151 -12.99357 -12.82405 -12.77976 -12.68007 -12.40792 -11.98045 -11.86668 -11.72166 -11.41878 -11.24974 -10.98291 -10.85612 -10.49453 -10.44149 -9.84585 -9.48386 -8.38055 -6.43617 -1.12739 -0.69409 0.51421 1.27310 1.33458 1.36434 1.45368 2.07730 2.16892 2.22258 2.26247 2.81361 2.87616 2.98202 3.07549 3.38621 3.62488 3.71292 3.91938 4.02142 4.20984 4.22858 4.31295 4.40985 4.49549 4.64122 4.71485 4.80172 4.83581 4.91132 4.94745 5.00302 5.07057 5.11222 5.21055 5.27728 5.35403 5.39917 5.50700 5.58263 5.80046 6.12137 6.43410 6.57722 6.76238 6.91941 7.16309 7.32849 8.76777 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025817 B = 0.003019 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.307675 B = 9271.384196 C = 9987.025117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.138 4.138 3 C 0.249 3.751 4 H 0.025 0.975 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.032 3.968 8 N -0.932 5.932 9 Si 0.932 3.068 10 H -0.258 1.258 11 H -0.260 1.260 12 H -0.295 1.295 13 N -0.686 5.686 14 C 0.543 3.457 15 O -0.570 6.570 16 C -0.081 4.081 17 C -0.102 4.102 18 C -0.048 4.048 19 C -0.179 4.179 20 C 0.423 3.577 21 O -0.464 6.464 22 N -0.556 5.556 23 C 0.335 3.665 24 C -0.083 4.083 25 N -0.532 5.532 26 C 0.153 3.847 27 C -0.058 4.058 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.270 0.730 34 H 0.408 0.592 35 H 0.160 0.840 36 H 0.183 0.817 37 H 0.437 0.563 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.425 5.747 19.212 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.176 4.176 3 C 0.144 3.856 4 H 0.043 0.957 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.168 4.168 8 N -0.571 5.571 9 Si 0.760 3.240 10 H -0.184 1.184 11 H -0.185 1.185 12 H -0.223 1.223 13 N -0.336 5.336 14 C 0.330 3.670 15 O -0.451 6.451 16 C -0.088 4.088 17 C -0.120 4.120 18 C -0.068 4.068 19 C -0.185 4.185 20 C 0.221 3.779 21 O -0.277 6.277 22 N -0.283 5.283 23 C 0.068 3.932 24 C -0.142 4.142 25 N -0.250 5.250 26 C 0.027 3.973 27 C -0.078 4.078 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.246 0.754 35 H 0.178 0.822 36 H 0.200 0.800 37 H 0.303 0.697 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.491 6.523 18.187 24.765 hybrid contribution 1.072 -1.111 -0.672 1.684 sum -14.419 5.412 17.515 23.323 Atomic orbital electron populations 1.21780 0.95357 1.00664 1.01525 1.22220 0.95694 0.98321 1.01372 1.18868 0.93499 0.89760 0.83460 0.95746 1.21251 0.90072 1.38635 1.07116 0.92066 1.25499 0.95663 0.95877 0.99747 1.69964 1.10206 1.46054 1.30826 0.86098 0.79375 0.80083 0.78463 1.18421 1.18502 1.22272 1.45915 1.15092 1.55189 1.17398 1.18553 0.82202 0.78730 0.87559 1.90747 1.52336 1.60800 1.41224 1.20103 0.95198 0.99112 0.94350 1.21337 0.99987 0.98930 0.91736 1.21122 0.93843 0.93180 0.98694 1.19870 0.98522 1.03938 0.96156 1.19692 0.85491 0.85649 0.87065 1.84596 1.55432 1.52346 1.35277 1.67841 1.04534 1.22234 1.33686 1.23689 0.96895 0.90168 0.82495 1.20763 0.87017 1.01379 1.04992 1.68645 1.18247 1.12897 1.25166 1.18810 0.89854 0.95161 0.93457 1.21006 0.95711 0.94881 0.96231 0.92896 0.94428 0.92170 0.93650 0.90857 0.92070 0.75426 0.82225 0.79969 0.69687 0.87736 0.88181 0.88861 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 8.51 71.98 0.61 -4.52 16 2 C -0.14 -5.72 5.11 30.60 0.16 -5.56 16 3 C 0.25 11.30 1.83 44.24 0.08 11.38 16 4 H 0.02 1.26 6.63 -2.39 -0.02 1.25 16 5 C -0.53 -27.95 9.31 25.60 0.24 -27.71 16 6 H 0.06 3.38 7.98 -2.91 -0.02 3.36 16 7 C 0.03 1.77 5.45 84.65 0.46 2.23 16 8 N -0.93 -54.68 13.96 21.45 0.30 -54.38 16 9 Si 0.93 43.86 24.41 68.60 1.67 45.53 16 10 H -0.26 -11.40 6.83 99.48 0.68 -10.72 16 11 H -0.26 -12.20 6.53 99.48 0.65 -11.55 16 12 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 13 N -0.69 -25.41 4.97 -448.82 -2.23 -27.64 16 14 C 0.54 19.65 6.34 86.83 0.55 20.21 16 15 O -0.57 -24.55 13.44 -3.83 -0.05 -24.60 16 16 C -0.08 -2.32 5.87 -20.09 -0.12 -2.44 16 17 C -0.10 -2.11 9.45 22.30 0.21 -1.90 16 18 C -0.05 -0.82 9.58 22.22 0.21 -0.60 16 19 C -0.18 -3.82 5.76 -21.17 -0.12 -3.94 16 20 C 0.42 7.99 7.89 85.44 0.67 8.66 16 21 O -0.46 -5.46 12.91 -85.73 -1.11 -6.56 16 22 N -0.56 -11.93 10.30 -299.80 -3.09 -15.01 16 23 C 0.34 7.40 7.62 138.76 1.06 8.46 16 24 C -0.08 -1.14 10.28 71.24 0.73 -0.41 16 25 N -0.53 -14.17 10.32 -181.80 -1.88 -16.05 16 26 C 0.15 4.10 6.61 40.09 0.26 4.36 16 27 C -0.06 -1.71 9.58 22.80 0.22 -1.49 16 28 H 0.05 1.96 5.64 -2.39 -0.01 1.95 16 29 H 0.04 1.52 7.84 -2.39 -0.02 1.50 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.98 3.22 -2.38 -0.01 1.98 16 32 H 0.07 2.82 8.14 -2.38 -0.02 2.81 16 33 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 34 H 0.41 12.72 6.52 -92.71 -0.60 12.12 16 35 H 0.16 2.68 6.34 -2.91 -0.02 2.67 16 36 H 0.18 1.66 7.70 -2.91 -0.02 1.63 16 37 H 0.44 0.19 9.06 -74.06 -0.67 -0.48 16 38 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.14 4.44 7.61 -2.91 -0.02 4.42 16 Total: -1.00 -73.42 337.55 -1.40 -74.82 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -0.25 Total: 17.17 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 5.23 Total: 6.73 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -6.89 Total: -113.09 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -1.16 Total: -31.16 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.67 Total: 45.53 kcal Total: -73.42 -1.40 -74.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897400024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.935 kcal (2) G-P(sol) polarization free energy of solvation -73.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds