Wall clock time and date at job start Tue Mar 31 2020 12:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47256 * 2 1 4 4 C 1.53003 * 109.47142 * 119.99282 * 2 1 3 5 5 N 1.46494 * 109.47283 * 305.00441 * 4 2 1 6 6 C 1.39667 * 119.99982 * 179.97438 * 5 4 2 7 7 C 1.38971 * 120.04737 * 359.72438 * 6 5 4 8 8 C 1.38120 * 120.03789 * 179.76518 * 7 6 5 9 9 C 1.38223 * 120.12334 * 0.50937 * 8 7 6 10 10 C 1.38767 * 120.09271 * 359.74496 * 9 8 7 11 11 O 1.35895 * 120.01601 * 179.97438 * 10 9 8 12 12 C 1.42908 * 117.00091 * 0.02562 * 11 10 9 13 13 C 1.52996 * 109.47114 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46885 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99987 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99739 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99810 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00131 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47560 * 89.99766 * 18 16 14 20 20 H 1.48503 * 109.47017 * 209.99515 * 18 16 14 21 21 H 1.48498 * 109.47502 * 329.99684 * 18 16 14 22 22 C 1.38611 * 119.96901 * 359.97438 * 10 9 8 23 23 C 1.53001 * 109.47329 * 239.99731 * 2 1 3 24 24 F 1.39898 * 109.46839 * 59.99931 * 23 2 1 25 25 F 1.39902 * 109.46747 * 179.97438 * 23 2 1 26 26 H 1.08997 * 109.46848 * 60.00342 * 1 2 3 27 27 H 1.08997 * 109.46819 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47286 * 300.00440 * 1 2 3 29 29 H 0.96700 * 114.00311 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46682 * 65.00170 * 4 2 1 31 31 H 1.08999 * 109.47221 * 185.00335 * 4 2 1 32 32 H 0.96999 * 120.00388 * 359.97438 * 5 4 2 33 33 H 1.07998 * 119.98138 * 0.02562 * 7 6 5 34 34 H 1.07990 * 119.93836 * 180.23112 * 8 7 6 35 35 H 1.07993 * 119.94879 * 179.71970 * 9 8 7 36 36 H 1.09001 * 109.46819 * 300.00103 * 12 11 10 37 37 H 1.08998 * 109.46805 * 60.00075 * 12 11 10 38 38 H 1.08997 * 109.47939 * 300.00356 * 13 12 11 39 39 H 1.09008 * 109.46990 * 60.00550 * 13 12 11 40 40 H 0.97000 * 119.99788 * 180.02562 * 17 16 14 41 41 H 1.07994 * 120.07047 * 180.02562 * 22 10 9 42 42 H 1.08997 * 109.47124 * 299.99757 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.4558 -0.1035 2.4424 6 6 1.7751 -0.5944 3.7104 7 6 2.6424 -1.6723 3.8411 8 6 2.9619 -2.1545 5.0954 9 6 2.4121 -1.5735 6.2226 10 6 1.5413 -0.5003 6.0980 11 8 1.0013 0.0694 7.2073 12 6 1.3743 -0.4872 8.4695 13 6 0.6727 0.2795 9.5924 14 6 1.0656 -0.3080 10.9234 15 1 1.7478 -1.1442 10.9643 16 6 0.5541 0.2222 12.0889 17 7 0.8966 -0.2907 13.2504 18 14 -0.6264 1.6681 12.0179 19 1 -2.0207 1.1650 11.9277 20 1 -0.4756 2.4909 13.2450 21 1 -0.3216 2.4981 10.8249 22 6 1.2226 -0.0096 4.8414 23 6 2.0400 -0.7213 -1.2492 24 9 1.5737 -0.0618 -2.3915 25 9 3.4391 -0.7207 -1.2494 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 2.9703 1.4237 -0.0004 30 1 1.7516 -1.7714 1.2057 31 1 3.1263 -0.6441 1.2953 32 1 0.8473 0.6464 2.3518 33 1 3.0702 -2.1306 2.9617 34 1 3.6389 -2.9899 5.1953 35 1 2.6602 -1.9557 7.2017 36 1 1.0792 -1.5359 8.5056 37 1 2.4541 -0.4090 8.5962 38 1 0.9680 1.3280 9.5562 39 1 -0.4072 0.2016 9.4658 40 1 0.5364 0.0820 14.0703 41 1 0.5455 0.8259 4.7425 42 1 1.6768 -1.7490 -1.2491 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905306928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:33 Heat of formation + Delta-G solvation = -170.979743 kcal Electronic energy + Delta-G solvation = -25434.144726 eV Core-core repulsion = 21242.892717 eV Total energy + Delta-G solvation = -4191.252009 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.59068 -47.58736 -39.99352 -39.03331 -37.48097 -34.96398 -33.32408 -32.60511 -31.11394 -29.86349 -28.65359 -27.53498 -25.96284 -24.94587 -22.68903 -21.80542 -21.09936 -20.33008 -18.59986 -18.22879 -17.98927 -17.78976 -16.92812 -16.56053 -15.87223 -15.65557 -15.50563 -15.37890 -15.06238 -14.53810 -14.41465 -14.11050 -13.97570 -13.84695 -13.74671 -13.42798 -13.13455 -12.98682 -12.85408 -12.77266 -12.54112 -12.46731 -11.79230 -11.72267 -11.60310 -11.29678 -10.88405 -10.75095 -10.63590 -10.16934 -10.13968 -9.90989 -9.78026 -9.33778 -8.62115 -8.06445 -7.46770 -6.13234 -4.13959 1.61568 1.75826 2.65565 3.22359 3.28724 3.35932 3.37664 3.41662 3.55783 3.67505 3.87594 3.94117 4.01845 4.31756 4.39368 4.47471 4.87584 4.97690 4.99595 5.11809 5.12827 5.20895 5.24183 5.44636 5.47673 5.51383 5.68048 5.95130 5.96493 6.00058 6.27410 6.44593 6.51374 6.65087 6.77036 6.83450 7.06018 7.23907 7.25228 7.50669 7.63637 7.96123 8.39289 8.87741 9.47120 10.99263 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.032426 B = 0.002067 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.291316 B =13544.239243 C =14157.066252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.078 3.922 3 O -0.537 6.537 4 C 0.105 3.895 5 N -0.741 5.741 6 C 0.245 3.755 7 C -0.243 4.243 8 C -0.036 4.036 9 C -0.260 4.260 10 C 0.187 3.813 11 O -0.320 6.320 12 C 0.073 3.927 13 C -0.009 4.009 14 C -0.526 4.526 15 H 0.075 0.925 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.881 3.119 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.263 1.263 22 C -0.234 4.234 23 C 0.239 3.761 24 F -0.193 7.193 25 F -0.201 7.201 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.386 0.614 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.403 0.597 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.027 0.973 39 H 0.023 0.977 40 H 0.266 0.734 41 H 0.125 0.875 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.207 -2.688 -31.195 31.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.036 3.964 3 O -0.344 6.344 4 C -0.021 4.021 5 N -0.374 5.374 6 C 0.143 3.857 7 C -0.266 4.266 8 C -0.055 4.055 9 C -0.281 4.281 10 C 0.140 3.860 11 O -0.233 6.233 12 C -0.001 4.001 13 C -0.047 4.047 14 C -0.564 4.564 15 H 0.093 0.907 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.708 3.292 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.188 1.188 22 C -0.258 4.258 23 C 0.184 3.816 24 F -0.174 7.174 25 F -0.183 7.183 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.235 0.765 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.240 0.760 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.041 0.959 40 H 0.075 0.925 41 H 0.143 0.857 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.530 -2.462 -31.125 31.259 hybrid contribution 0.086 0.661 0.082 0.671 sum 1.616 -1.802 -31.042 31.137 Atomic orbital electron populations 1.21768 0.89754 1.03819 1.04792 1.22523 0.97786 0.84263 0.91850 1.86641 1.27866 1.23273 1.96582 1.21781 0.98706 0.97247 0.84332 1.44320 1.53181 1.38318 1.01549 1.17305 0.92490 0.91892 0.84036 1.20389 1.06764 1.01667 0.97750 1.20640 0.96146 0.97231 0.91437 1.21193 1.05383 1.01464 1.00050 1.18768 0.90043 0.90247 0.86992 1.86101 1.66178 1.56960 1.14031 1.23076 0.99742 0.97992 0.79246 1.19591 0.96288 0.96602 0.92204 1.20843 1.29377 1.17932 0.88233 0.90725 1.24942 0.96121 0.96840 0.95181 1.69896 1.44417 1.41675 0.97600 0.86752 0.81585 0.83010 0.77885 1.20079 1.21194 1.18751 1.19638 1.10339 1.06817 0.88966 1.22633 0.75861 0.98452 0.84604 1.93014 1.88108 1.83658 1.52614 1.93000 1.30865 1.97630 1.96766 0.90410 0.89974 0.90061 0.76508 0.90819 0.91008 0.75996 0.86754 0.86178 0.85357 0.92446 0.92425 0.95436 0.95879 0.92466 0.85744 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 8.49 37.16 0.32 -0.41 16 2 C 0.08 0.43 0.72 -90.62 -0.07 0.37 16 3 O -0.54 -3.83 12.87 -35.23 -0.45 -4.28 16 4 C 0.11 0.64 3.87 -4.04 -0.02 0.63 16 5 N -0.74 -6.46 5.36 -58.65 -0.31 -6.78 16 6 C 0.24 2.94 6.65 -83.81 -0.56 2.38 16 7 C -0.24 -2.82 9.31 -39.35 -0.37 -3.18 16 8 C -0.04 -0.45 10.03 -39.63 -0.40 -0.85 16 9 C -0.26 -4.01 9.04 -39.39 -0.36 -4.36 16 10 C 0.19 3.17 6.68 -39.25 -0.26 2.91 16 11 O -0.32 -6.30 10.13 -19.41 -0.20 -6.50 16 12 C 0.07 1.52 4.68 37.16 0.17 1.70 16 13 C -0.01 -0.23 4.41 -27.88 -0.12 -0.35 16 14 C -0.53 -14.83 9.66 -34.44 -0.33 -15.16 16 15 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 17 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 18 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 22 C -0.23 -3.41 9.83 -39.24 -0.39 -3.79 16 23 C 0.24 1.22 4.44 37.16 0.17 1.38 16 24 F -0.19 -1.46 16.76 2.25 0.04 -1.42 16 25 F -0.20 -1.31 16.53 2.25 0.04 -1.28 16 26 H 0.08 0.43 7.80 -51.93 -0.41 0.02 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 0.46 6.57 -51.93 -0.34 0.12 16 29 H 0.39 1.91 8.69 45.56 0.40 2.30 16 30 H 0.07 0.37 7.94 -51.93 -0.41 -0.04 16 31 H 0.07 0.45 7.76 -51.93 -0.40 0.05 16 32 H 0.40 3.37 7.00 -40.82 -0.29 3.08 16 33 H 0.11 1.05 6.73 -52.49 -0.35 0.69 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.13 1.98 6.29 -52.49 -0.33 1.65 16 36 H 0.06 1.15 7.66 -51.93 -0.40 0.75 16 37 H 0.06 1.16 7.66 -51.93 -0.40 0.76 16 38 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 39 H 0.02 0.56 7.57 -51.92 -0.39 0.16 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 354.69 15.07 5.35 5.35 Total: -1.00 -32.58 354.69 -6.72 -39.30 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -4.97 Total: 1.96 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -2.31 Total: -16.80 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.46 Total: -33.28 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.65 Total: -10.78 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.07 Total: -2.69 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.58 -6.72 -39.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905306928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.676 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds