Wall clock time and date at job start Tue Mar 31 2020 12:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47256 * 2 1 4 4 C 1.53003 * 109.47142 * 119.99282 * 2 1 3 5 5 N 1.46494 * 109.47283 * 305.00441 * 4 2 1 6 6 C 1.39667 * 119.99982 * 179.97438 * 5 4 2 7 7 C 1.38971 * 120.04737 * 359.72438 * 6 5 4 8 8 C 1.38120 * 120.03789 * 179.76518 * 7 6 5 9 9 C 1.38223 * 120.12334 * 0.50937 * 8 7 6 10 10 C 1.38767 * 120.09271 * 359.74496 * 9 8 7 11 11 O 1.35895 * 120.01601 * 179.97438 * 10 9 8 12 12 C 1.42908 * 117.00091 * 0.02562 * 11 10 9 13 13 C 1.52996 * 109.47114 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46885 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99987 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99739 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99810 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00131 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47560 * 89.99766 * 18 16 14 20 20 H 1.48503 * 109.47017 * 209.99515 * 18 16 14 21 21 H 1.48498 * 109.47502 * 329.99684 * 18 16 14 22 22 C 1.38611 * 119.96901 * 359.97438 * 10 9 8 23 23 C 1.53001 * 109.47329 * 239.99731 * 2 1 3 24 24 F 1.39898 * 109.46839 * 59.99931 * 23 2 1 25 25 F 1.39902 * 109.46747 * 179.97438 * 23 2 1 26 26 H 1.08997 * 109.46848 * 60.00342 * 1 2 3 27 27 H 1.08997 * 109.46819 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47286 * 300.00440 * 1 2 3 29 29 H 0.96700 * 114.00311 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46682 * 65.00170 * 4 2 1 31 31 H 1.08999 * 109.47221 * 185.00335 * 4 2 1 32 32 H 0.96999 * 120.00388 * 359.97438 * 5 4 2 33 33 H 1.07998 * 119.98138 * 0.02562 * 7 6 5 34 34 H 1.07990 * 119.93836 * 180.23112 * 8 7 6 35 35 H 1.07993 * 119.94879 * 179.71970 * 9 8 7 36 36 H 1.09001 * 109.46819 * 300.00103 * 12 11 10 37 37 H 1.08998 * 109.46805 * 60.00075 * 12 11 10 38 38 H 1.08997 * 109.47939 * 300.00356 * 13 12 11 39 39 H 1.09008 * 109.46990 * 60.00550 * 13 12 11 40 40 H 0.97000 * 119.99788 * 180.02562 * 17 16 14 41 41 H 1.07994 * 120.07047 * 180.02562 * 22 10 9 42 42 H 1.08997 * 109.47124 * 299.99757 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.4558 -0.1035 2.4424 6 6 1.7751 -0.5944 3.7104 7 6 2.6424 -1.6723 3.8411 8 6 2.9619 -2.1545 5.0954 9 6 2.4121 -1.5735 6.2226 10 6 1.5413 -0.5003 6.0980 11 8 1.0013 0.0694 7.2073 12 6 1.3743 -0.4872 8.4695 13 6 0.6727 0.2795 9.5924 14 6 1.0656 -0.3080 10.9234 15 1 1.7478 -1.1442 10.9643 16 6 0.5541 0.2222 12.0889 17 7 0.8966 -0.2907 13.2504 18 14 -0.6264 1.6681 12.0179 19 1 -2.0207 1.1650 11.9277 20 1 -0.4756 2.4909 13.2450 21 1 -0.3216 2.4981 10.8249 22 6 1.2226 -0.0096 4.8414 23 6 2.0400 -0.7213 -1.2492 24 9 1.5737 -0.0618 -2.3915 25 9 3.4391 -0.7207 -1.2494 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 2.9703 1.4237 -0.0004 30 1 1.7516 -1.7714 1.2057 31 1 3.1263 -0.6441 1.2953 32 1 0.8473 0.6464 2.3518 33 1 3.0702 -2.1306 2.9617 34 1 3.6389 -2.9899 5.1953 35 1 2.6602 -1.9557 7.2017 36 1 1.0792 -1.5359 8.5056 37 1 2.4541 -0.4090 8.5962 38 1 0.9680 1.3280 9.5562 39 1 -0.4072 0.2016 9.4658 40 1 0.5364 0.0820 14.0703 41 1 0.5455 0.8259 4.7425 42 1 1.6768 -1.7490 -1.2491 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905306928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:32 Heat of formation + Delta-G solvation = -193.761358 kcal Electronic energy + Delta-G solvation = -25435.132611 eV Core-core repulsion = 21242.892717 eV Total energy + Delta-G solvation = -4192.239894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.02644 -48.04307 -41.07897 -39.79040 -38.50458 -35.84362 -35.31128 -33.19532 -32.90754 -31.07130 -29.62459 -27.99075 -27.19331 -26.16293 -23.78187 -23.05196 -21.93058 -21.63230 -19.58960 -18.95310 -18.73064 -18.39335 -18.28887 -17.46496 -16.96189 -16.95149 -16.56740 -16.32152 -16.12910 -15.75203 -15.44458 -14.91075 -14.70568 -14.62602 -14.51818 -14.41020 -14.20037 -14.12393 -14.05712 -13.47236 -13.30597 -13.21356 -13.16404 -12.93135 -12.57050 -12.53803 -12.26788 -12.03393 -11.88294 -11.74481 -11.61780 -11.41010 -11.09669 -10.89250 -10.81473 -9.22674 -8.37300 -8.35013 -6.41607 0.56888 0.68352 1.35769 1.37286 1.50183 1.99782 2.33104 2.47141 2.83952 2.95037 2.98523 2.99766 3.21168 3.24832 3.53713 3.96656 3.99065 4.06628 4.23504 4.24161 4.28217 4.34251 4.47646 4.48625 4.56528 4.66088 4.69482 4.72112 4.76711 4.95742 5.11596 5.15216 5.29792 5.30467 5.50038 5.51743 5.63749 5.72184 6.16228 6.34605 6.45811 6.57897 6.63894 6.73761 7.23393 8.80642 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.032426 B = 0.002067 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.291316 B =13544.239243 C =14157.066252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.083 3.917 3 O -0.557 6.557 4 C 0.102 3.898 5 N -0.732 5.732 6 C 0.254 3.746 7 C -0.234 4.234 8 C -0.033 4.033 9 C -0.282 4.282 10 C 0.153 3.847 11 O -0.337 6.337 12 C 0.089 3.911 13 C -0.007 4.007 14 C -0.536 4.536 15 H 0.042 0.958 16 C 0.013 3.987 17 N -0.942 5.942 18 Si 0.949 3.051 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.252 1.252 22 C -0.248 4.248 23 C 0.236 3.764 24 F -0.209 7.209 25 F -0.210 7.210 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.393 0.607 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.405 0.595 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.117 0.883 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.027 0.973 39 H 0.026 0.974 40 H 0.270 0.730 41 H 0.125 0.875 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.904 -2.898 -34.011 34.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.040 3.960 3 O -0.365 6.365 4 C -0.023 4.023 5 N -0.363 5.363 6 C 0.149 3.851 7 C -0.256 4.256 8 C -0.052 4.052 9 C -0.303 4.303 10 C 0.106 3.894 11 O -0.251 6.251 12 C 0.015 3.985 13 C -0.044 4.044 14 C -0.574 4.574 15 H 0.060 0.940 16 C -0.186 4.186 17 N -0.581 5.581 18 Si 0.772 3.228 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.175 1.175 22 C -0.271 4.271 23 C 0.182 3.818 24 F -0.190 7.190 25 F -0.191 7.191 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.091 0.909 29 H 0.243 0.757 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.242 0.758 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.135 0.865 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.079 0.921 41 H 0.143 0.857 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.236 -2.672 -34.001 34.128 hybrid contribution 0.261 0.656 0.777 1.050 sum 1.497 -2.016 -33.224 33.319 Atomic orbital electron populations 1.21826 0.89505 1.05016 1.04038 1.22538 0.97923 0.83599 0.91895 1.86624 1.28686 1.24561 1.96656 1.21988 0.98881 0.98267 0.83175 1.44428 1.52577 1.38019 1.01249 1.17361 0.91678 0.91536 0.84503 1.20759 1.05598 1.00828 0.98441 1.20963 0.95788 0.97488 0.90958 1.21235 1.06374 1.01955 1.00750 1.19085 0.91830 0.91778 0.86662 1.86004 1.67241 1.57738 1.14161 1.22639 0.99083 0.97318 0.79504 1.19451 0.96693 0.96597 0.91659 1.21107 1.28677 1.17182 0.90432 0.93967 1.25890 0.98054 0.99953 0.94663 1.70028 1.46055 1.43557 0.98493 0.85669 0.79325 0.79328 0.78450 1.18899 1.20414 1.17528 1.19757 1.11037 1.07317 0.89008 1.22982 0.75304 1.00008 0.83524 1.92983 1.88287 1.84236 1.53524 1.92983 1.31711 1.97713 1.96737 0.91104 0.87852 0.90886 0.75699 0.88520 0.90503 0.75782 0.83413 0.83515 0.86505 0.92419 0.92558 0.95514 0.95528 0.92095 0.85749 0.82468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.49 71.98 0.61 -0.51 16 2 C 0.08 0.68 0.72 -10.79 -0.01 0.67 16 3 O -0.56 -6.99 12.87 -148.98 -1.92 -8.91 16 4 C 0.10 0.86 3.87 86.38 0.33 1.19 16 5 N -0.73 -10.69 5.36 -339.47 -1.82 -12.51 16 6 C 0.25 5.47 6.65 38.20 0.25 5.72 16 7 C -0.23 -4.61 9.31 22.42 0.21 -4.40 16 8 C -0.03 -0.77 10.03 22.24 0.22 -0.55 16 9 C -0.28 -8.66 9.04 22.39 0.20 -8.46 16 10 C 0.15 5.21 6.68 22.49 0.15 5.36 16 11 O -0.34 -13.57 10.13 -92.37 -0.94 -14.51 16 12 C 0.09 3.80 4.68 71.98 0.34 4.14 16 13 C -0.01 -0.32 4.41 29.85 0.13 -0.19 16 14 C -0.54 -31.10 9.66 25.60 0.25 -30.86 16 15 H 0.04 2.64 7.99 -2.91 -0.02 2.62 16 16 C 0.01 0.73 5.47 84.65 0.46 1.20 16 17 N -0.94 -58.50 13.96 21.45 0.30 -58.20 16 18 Si 0.95 44.57 27.47 68.60 1.88 46.46 16 19 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.25 -11.26 6.54 99.48 0.65 -10.60 16 22 C -0.25 -7.03 9.83 22.49 0.22 -6.81 16 23 C 0.24 1.68 4.44 71.98 0.32 2.00 16 24 F -0.21 -2.75 16.76 44.97 0.75 -1.99 16 25 F -0.21 -2.18 16.53 44.97 0.74 -1.44 16 26 H 0.07 0.66 7.80 -2.39 -0.02 0.64 16 27 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.07 0.69 6.57 -2.39 -0.02 0.67 16 29 H 0.39 3.28 8.69 -74.06 -0.64 2.64 16 30 H 0.10 0.46 7.94 -2.38 -0.02 0.44 16 31 H 0.08 0.65 7.76 -2.39 -0.02 0.63 16 32 H 0.41 5.91 7.00 -92.71 -0.65 5.26 16 33 H 0.15 1.93 6.73 -2.91 -0.02 1.91 16 34 H 0.15 2.55 8.06 -2.92 -0.02 2.52 16 35 H 0.12 3.74 6.29 -2.91 -0.02 3.72 16 36 H 0.06 2.40 7.66 -2.39 -0.02 2.38 16 37 H 0.06 2.36 7.66 -2.39 -0.02 2.34 16 38 H 0.03 1.31 7.20 -2.39 -0.02 1.29 16 39 H 0.03 1.28 7.57 -2.38 -0.02 1.26 16 40 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 41 H 0.12 3.40 8.06 -2.91 -0.02 3.37 16 42 H 0.16 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: -1.00 -72.03 354.69 2.41 -69.61 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -0.29 Total: 12.97 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: 3.70 Total: -31.48 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -1.52 Total: -70.71 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -2.85 Total: -23.42 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 1.50 Total: -3.43 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.46 kcal Total: -72.03 2.41 -69.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905306928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.147 kcal (2) G-P(sol) polarization free energy of solvation -72.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds