Wall clock time and date at job start Tue Mar 31 2020 10:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47236 * 340.37973 * 3 2 1 5 5 C 1.52998 * 109.46944 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47310 * 180.02562 * 5 4 3 7 7 O 1.21290 * 119.99751 * 359.97438 * 6 5 4 8 8 N 1.34769 * 120.00255 * 179.97438 * 6 5 4 9 9 N 1.40107 * 120.00147 * 179.97438 * 8 6 5 10 10 C 1.34779 * 119.99997 * 179.97438 * 9 8 6 11 11 O 1.21583 * 119.99697 * 180.02562 * 10 9 8 12 12 N 1.34770 * 119.99895 * 0.02562 * 10 9 8 13 13 C 1.39245 * 119.99954 * 185.17329 * 12 10 9 14 14 C 1.39478 * 119.83621 * 324.02086 * 13 12 10 15 15 C 1.36372 * 120.17077 * 180.27205 * 14 13 12 16 16 C 1.40867 * 119.82550 * 359.47813 * 15 14 13 17 17 C 1.41160 * 120.16063 * 180.22670 * 16 15 14 18 18 H 1.07996 * 120.00221 * 205.15328 * 17 16 15 19 19 C 1.39894 * 120.00134 * 25.15597 * 17 16 15 20 20 N 1.30885 * 119.99957 * 17.80407 * 19 17 16 21 21 Si 1.86800 * 120.00266 * 197.79907 * 19 17 16 22 22 H 1.48499 * 109.46794 * 94.98183 * 21 19 17 23 23 H 1.48501 * 109.47188 * 214.98269 * 21 19 17 24 24 H 1.48500 * 109.46820 * 334.98459 * 21 19 17 25 25 C 1.40862 * 119.67575 * 0.54276 * 16 15 14 26 26 C 1.36371 * 119.82597 * 359.70473 * 25 16 15 27 27 H 4.44646 * 5.63309 * 179.97438 * 4 1 2 28 28 H 1.09002 * 109.46923 * 220.37823 * 3 2 1 29 29 H 1.09001 * 109.46683 * 100.38037 * 3 2 1 30 30 H 1.09002 * 109.47288 * 60.00073 * 4 3 2 31 31 H 1.08993 * 109.47324 * 299.99938 * 4 3 2 32 32 H 1.09002 * 109.47016 * 59.99971 * 5 4 3 33 33 H 1.09006 * 109.47341 * 300.00071 * 5 4 3 34 34 H 0.97008 * 120.00105 * 359.97438 * 8 6 5 35 35 H 0.96994 * 119.99695 * 0.02562 * 9 8 6 36 36 H 0.96995 * 120.00649 * 5.18142 * 12 10 9 37 37 H 1.08009 * 119.91216 * 359.97438 * 14 13 12 38 38 H 1.08004 * 120.08604 * 179.72200 * 15 14 13 39 39 H 0.96996 * 120.00031 * 179.97438 * 20 19 17 40 40 H 1.07998 * 120.08900 * 179.69718 * 25 16 15 41 41 H 1.08006 * 119.91484 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1567 -1.3578 0.4844 5 6 4.6867 -1.3573 0.4837 6 6 5.1897 -2.6955 0.9602 7 8 4.4020 -3.5641 1.2703 8 7 6.5148 -2.9273 1.0418 9 7 6.9825 -4.1713 1.4853 10 6 8.3077 -4.4031 1.5664 11 8 8.7135 -5.4829 1.9508 12 7 9.1830 -3.4382 1.2213 13 6 10.5482 -3.7112 1.2016 14 6 11.0982 -4.5691 2.1540 15 6 12.4353 -4.8369 2.1444 16 6 13.2597 -4.2532 1.1626 17 6 14.6439 -4.5293 1.1431 18 1 15.3294 -3.8225 0.6995 19 6 15.1278 -5.7186 1.6985 20 7 14.3120 -6.7187 1.9163 21 14 16.9383 -5.8795 2.1292 22 1 17.1380 -5.5442 3.5620 23 1 17.3843 -7.2740 1.8804 24 1 17.7319 -4.9483 1.2876 25 6 12.6972 -3.3874 0.2044 26 6 11.3592 -3.1252 0.2298 27 1 -1.0497 -0.0003 0.0003 28 1 3.0090 0.7837 0.6658 29 1 3.0092 0.1860 -1.0109 30 1 2.7937 -2.1409 -0.1814 31 1 2.7935 -1.5432 1.4951 32 1 5.0500 -0.5742 1.1492 33 1 5.0496 -1.1721 -0.5273 34 1 7.1449 -2.2327 0.7934 35 1 6.3525 -4.8658 1.7332 36 1 8.8620 -2.5534 0.9868 37 1 10.4641 -5.0188 2.9039 38 1 12.8604 -5.4979 2.8852 39 1 14.6476 -7.5434 2.3011 40 1 13.3239 -2.9324 -0.5484 41 1 10.9263 -2.4619 -0.5045 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929430431.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:02 Heat of formation + Delta-G solvation = 40.141567 kcal Electronic energy + Delta-G solvation = -24051.215512 eV Core-core repulsion = 20319.807596 eV Total energy + Delta-G solvation = -3731.407916 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.63824 -39.52396 -37.46628 -36.19076 -35.55873 -34.55524 -32.94765 -32.81349 -31.07712 -29.52037 -28.93389 -28.01765 -25.04690 -23.20249 -22.01501 -21.44838 -20.88477 -20.07018 -18.89542 -18.52076 -17.77409 -17.33871 -16.53133 -16.47991 -15.63897 -15.43772 -15.20397 -14.96005 -14.63261 -14.41701 -14.05712 -13.93915 -13.23278 -13.09883 -12.98177 -12.73358 -12.13122 -12.05144 -11.92028 -11.64776 -11.45005 -11.35086 -11.15497 -10.97400 -10.62621 -10.55521 -10.47722 -10.46716 -10.09752 -9.99155 -9.64302 -9.27457 -8.78942 -8.41265 -7.56324 -7.07459 -6.76908 -4.32694 1.74916 2.19913 2.45958 2.48752 2.64638 3.03003 3.06534 3.10497 3.11919 3.29711 3.53664 3.91687 3.93359 4.07676 4.53024 4.56706 4.60689 4.85162 5.00449 5.02611 5.11679 5.16960 5.65960 5.66153 5.66823 5.85107 6.06787 6.27344 6.35084 6.50486 6.69787 7.00851 7.03647 7.17102 7.22676 7.24664 7.26558 7.56007 7.60841 7.87897 7.94960 8.03067 8.23282 8.38441 8.60270 8.77551 8.85655 8.97632 10.16406 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.043320 B = 0.001923 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.191936 B =14554.851178 C =15091.023747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 C -0.013 4.013 4 C -0.100 4.100 5 C -0.132 4.132 6 C 0.512 3.488 7 O -0.537 6.537 8 N -0.528 5.528 9 N -0.541 5.541 10 C 0.701 3.299 11 O -0.553 6.553 12 N -0.661 5.661 13 C -0.001 4.001 14 C -0.083 4.083 15 C -0.157 4.157 16 C 0.107 3.893 17 C -0.459 4.459 18 H 0.079 0.921 19 C 0.074 3.926 20 N -0.786 5.786 21 Si 0.909 3.091 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.216 4.216 26 C -0.101 4.101 27 H 0.216 0.784 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.420 0.580 35 H 0.438 0.562 36 H 0.384 0.616 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.282 0.718 40 H 0.096 0.904 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.481 13.581 -3.068 22.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.187 4.187 3 C -0.050 4.050 4 C -0.138 4.138 5 C -0.173 4.173 6 C 0.298 3.702 7 O -0.411 6.411 8 N -0.279 5.279 9 N -0.300 5.300 10 C 0.401 3.599 11 O -0.425 6.425 12 N -0.309 5.309 13 C -0.093 4.093 14 C -0.104 4.104 15 C -0.177 4.177 16 C 0.104 3.896 17 C -0.488 4.488 18 H 0.097 0.903 19 C -0.144 4.144 20 N -0.411 5.411 21 Si 0.733 3.267 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.236 4.236 26 C -0.122 4.122 27 H 0.233 0.767 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.261 0.739 35 H 0.284 0.716 36 H 0.218 0.782 37 H 0.125 0.875 38 H 0.137 0.863 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.581 11.949 -2.519 21.406 hybrid contribution 0.443 0.312 -0.065 0.546 sum -17.138 12.261 -2.584 21.230 Atomic orbital electron populations 1.24936 0.96053 1.00584 1.01102 1.23065 0.94566 1.00631 1.00452 1.18754 0.84954 0.98358 1.02934 1.21293 0.92321 0.96513 1.03686 1.21631 0.97743 0.93919 1.04023 1.20924 0.80235 0.90707 0.78323 1.90759 1.54571 1.46616 1.49188 1.44987 1.07263 1.07672 1.67948 1.44837 1.05429 1.06792 1.72910 1.15886 0.79153 0.84783 0.80034 1.91049 1.74032 1.24388 1.53043 1.42043 1.05727 1.11670 1.71458 1.16952 0.79534 1.10251 1.02565 1.20563 0.95268 0.97496 0.97031 1.20989 0.92142 1.04027 1.00522 1.17684 0.93398 0.89350 0.89119 1.19572 0.92823 1.03099 1.33325 0.90297 1.25953 1.00267 0.95040 0.93171 1.69866 1.37312 1.02870 1.31017 0.86291 0.82239 0.78343 0.79805 1.19310 1.20271 1.18553 1.20524 0.93492 1.07742 1.01870 1.20009 0.94386 1.01490 0.96278 0.76708 0.89287 0.89283 0.90470 0.90470 0.87874 0.87873 0.73911 0.71594 0.78199 0.87465 0.86279 0.90703 0.88568 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.52 19.25 29.55 0.57 -0.95 16 2 C -0.19 -1.45 13.34 -37.12 -0.50 -1.94 16 3 C -0.01 -0.07 5.70 -29.52 -0.17 -0.24 16 4 C -0.10 -0.63 4.46 -26.73 -0.12 -0.75 16 5 C -0.13 -0.62 5.70 -27.88 -0.16 -0.78 16 6 C 0.51 4.79 7.95 -10.99 -0.09 4.70 16 7 O -0.54 -7.28 15.82 5.55 0.09 -7.19 16 8 N -0.53 -5.01 6.25 31.22 0.20 -4.82 16 9 N -0.54 -7.44 6.26 27.63 0.17 -7.27 16 10 C 0.70 12.46 8.51 -86.92 -0.74 11.72 16 11 O -0.55 -12.53 14.62 5.29 0.08 -12.45 16 12 N -0.66 -10.97 5.26 -14.10 -0.07 -11.04 16 13 C 0.00 -0.02 6.30 -83.57 -0.53 -0.54 16 14 C -0.08 -2.04 8.61 -39.79 -0.34 -2.39 16 15 C -0.16 -4.13 8.63 -39.26 -0.34 -4.47 16 16 C 0.11 2.81 5.57 -106.80 -0.59 2.22 16 17 C -0.46 -11.95 9.03 -37.85 -0.34 -12.29 16 18 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 19 C 0.07 1.86 5.13 -17.34 -0.09 1.77 16 20 N -0.79 -20.55 10.99 55.55 0.61 -19.94 16 21 Si 0.91 18.47 29.60 -169.99 -5.03 13.44 16 22 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 25 C -0.22 -5.06 9.74 -39.26 -0.38 -5.44 16 26 C -0.10 -2.11 9.90 -39.79 -0.39 -2.51 16 27 H 0.22 0.88 7.80 -54.10 -0.42 0.46 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.42 2.71 6.72 -182.59 -1.23 1.48 16 35 H 0.44 6.22 8.10 -182.60 -1.48 4.75 16 36 H 0.38 4.56 6.76 -40.82 -0.28 4.29 16 37 H 0.11 2.67 6.25 -52.48 -0.33 2.34 16 38 H 0.12 3.27 6.20 -52.48 -0.33 2.95 16 39 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 40 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 41 H 0.09 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 360.85 15.07 5.44 5.44 Total: -1.00 -34.22 360.85 -9.72 -43.93 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -6.98 Total: 11.80 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -4.21 Total: -11.90 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.90 Total: -43.07 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 0.17 Total: -19.64 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.22 -9.72 -43.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929430431.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.073 kcal (2) G-P(sol) polarization free energy of solvation -34.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds