Wall clock time and date at job start Tue Mar 31 2020 10:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47236 * 340.37973 * 3 2 1 5 5 C 1.52998 * 109.46944 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47310 * 180.02562 * 5 4 3 7 7 O 1.21290 * 119.99751 * 359.97438 * 6 5 4 8 8 N 1.34769 * 120.00255 * 179.97438 * 6 5 4 9 9 N 1.40107 * 120.00147 * 179.97438 * 8 6 5 10 10 C 1.34779 * 119.99997 * 179.97438 * 9 8 6 11 11 O 1.21583 * 119.99697 * 180.02562 * 10 9 8 12 12 N 1.34770 * 119.99895 * 0.02562 * 10 9 8 13 13 C 1.39245 * 119.99954 * 185.17329 * 12 10 9 14 14 C 1.39478 * 119.83621 * 324.02086 * 13 12 10 15 15 C 1.36372 * 120.17077 * 180.27205 * 14 13 12 16 16 C 1.40867 * 119.82550 * 359.47813 * 15 14 13 17 17 C 1.41160 * 120.16063 * 180.22670 * 16 15 14 18 18 H 1.07996 * 120.00221 * 205.15328 * 17 16 15 19 19 C 1.39894 * 120.00134 * 25.15597 * 17 16 15 20 20 N 1.30885 * 119.99957 * 17.80407 * 19 17 16 21 21 Si 1.86800 * 120.00266 * 197.79907 * 19 17 16 22 22 H 1.48499 * 109.46794 * 94.98183 * 21 19 17 23 23 H 1.48501 * 109.47188 * 214.98269 * 21 19 17 24 24 H 1.48500 * 109.46820 * 334.98459 * 21 19 17 25 25 C 1.40862 * 119.67575 * 0.54276 * 16 15 14 26 26 C 1.36371 * 119.82597 * 359.70473 * 25 16 15 27 27 H 4.44646 * 5.63309 * 179.97438 * 4 1 2 28 28 H 1.09002 * 109.46923 * 220.37823 * 3 2 1 29 29 H 1.09001 * 109.46683 * 100.38037 * 3 2 1 30 30 H 1.09002 * 109.47288 * 60.00073 * 4 3 2 31 31 H 1.08993 * 109.47324 * 299.99938 * 4 3 2 32 32 H 1.09002 * 109.47016 * 59.99971 * 5 4 3 33 33 H 1.09006 * 109.47341 * 300.00071 * 5 4 3 34 34 H 0.97008 * 120.00105 * 359.97438 * 8 6 5 35 35 H 0.96994 * 119.99695 * 0.02562 * 9 8 6 36 36 H 0.96995 * 120.00649 * 5.18142 * 12 10 9 37 37 H 1.08009 * 119.91216 * 359.97438 * 14 13 12 38 38 H 1.08004 * 120.08604 * 179.72200 * 15 14 13 39 39 H 0.96996 * 120.00031 * 179.97438 * 20 19 17 40 40 H 1.07998 * 120.08900 * 179.69718 * 25 16 15 41 41 H 1.08006 * 119.91484 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1567 -1.3578 0.4844 5 6 4.6867 -1.3573 0.4837 6 6 5.1897 -2.6955 0.9602 7 8 4.4020 -3.5641 1.2703 8 7 6.5148 -2.9273 1.0418 9 7 6.9825 -4.1713 1.4853 10 6 8.3077 -4.4031 1.5664 11 8 8.7135 -5.4829 1.9508 12 7 9.1830 -3.4382 1.2213 13 6 10.5482 -3.7112 1.2016 14 6 11.0982 -4.5691 2.1540 15 6 12.4353 -4.8369 2.1444 16 6 13.2597 -4.2532 1.1626 17 6 14.6439 -4.5293 1.1431 18 1 15.3294 -3.8225 0.6995 19 6 15.1278 -5.7186 1.6985 20 7 14.3120 -6.7187 1.9163 21 14 16.9383 -5.8795 2.1292 22 1 17.1380 -5.5442 3.5620 23 1 17.3843 -7.2740 1.8804 24 1 17.7319 -4.9483 1.2876 25 6 12.6972 -3.3874 0.2044 26 6 11.3592 -3.1252 0.2298 27 1 -1.0497 -0.0003 0.0003 28 1 3.0090 0.7837 0.6658 29 1 3.0092 0.1860 -1.0109 30 1 2.7937 -2.1409 -0.1814 31 1 2.7935 -1.5432 1.4951 32 1 5.0500 -0.5742 1.1492 33 1 5.0496 -1.1721 -0.5273 34 1 7.1449 -2.2327 0.7934 35 1 6.3525 -4.8658 1.7332 36 1 8.8620 -2.5534 0.9868 37 1 10.4641 -5.0188 2.9039 38 1 12.8604 -5.4979 2.8852 39 1 14.6476 -7.5434 2.3011 40 1 13.3239 -2.9324 -0.5484 41 1 10.9263 -2.4619 -0.5045 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929430431.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:01 Heat of formation + Delta-G solvation = 16.973069 kcal Electronic energy + Delta-G solvation = -24052.220174 eV Core-core repulsion = 20319.807596 eV Total energy + Delta-G solvation = -3732.412577 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.84891 -40.65227 -39.17351 -37.04700 -36.39099 -36.22392 -34.64663 -33.42429 -32.08626 -31.35651 -30.66026 -28.58113 -26.82613 -23.87752 -23.53627 -23.15315 -21.76439 -21.58826 -20.08380 -19.24738 -19.18529 -18.69665 -17.75581 -17.18936 -17.01260 -16.84926 -16.49674 -16.10992 -15.73033 -15.47034 -15.42967 -14.89899 -14.60509 -14.49929 -13.93487 -13.71994 -13.62227 -13.50093 -13.35654 -12.82646 -12.70889 -12.49839 -12.47202 -12.31438 -11.90488 -11.89697 -11.75616 -11.44221 -11.24882 -11.10883 -10.99112 -10.91950 -10.55580 -9.52821 -9.42205 -8.85343 -8.60085 -6.25282 0.73386 0.90840 1.18283 1.39561 1.42284 1.52296 1.54304 1.89999 1.96462 2.01767 2.09443 2.22435 2.77508 3.35734 3.57325 3.76369 3.96350 4.14282 4.19595 4.46949 4.51255 4.53286 4.73122 4.74863 4.86783 4.96201 5.07136 5.16337 5.23718 5.24867 5.28406 5.32252 5.38622 5.41585 5.55976 5.73419 6.01184 6.08205 6.12875 6.30596 6.37099 6.70979 6.71900 6.76053 6.94994 7.03365 7.27280 7.44424 8.34919 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.043320 B = 0.001923 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.191936 B =14554.851178 C =15091.023747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.213 4.213 3 C -0.011 4.011 4 C -0.097 4.097 5 C -0.119 4.119 6 C 0.511 3.489 7 O -0.583 6.583 8 N -0.516 5.516 9 N -0.534 5.534 10 C 0.702 3.298 11 O -0.609 6.609 12 N -0.645 5.645 13 C 0.017 3.983 14 C -0.100 4.100 15 C -0.182 4.182 16 C 0.074 3.926 17 C -0.493 4.493 18 H 0.084 0.916 19 C 0.030 3.970 20 N -0.829 5.829 21 Si 0.984 3.016 22 H -0.265 1.265 23 H -0.272 1.272 24 H -0.252 1.252 25 C -0.222 4.222 26 C -0.091 4.091 27 H 0.235 0.765 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.437 0.563 35 H 0.438 0.562 36 H 0.413 0.587 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.286 0.714 40 H 0.113 0.887 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.892 16.707 -4.678 24.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.213 4.213 3 C -0.047 4.047 4 C -0.135 4.135 5 C -0.160 4.160 6 C 0.300 3.700 7 O -0.460 6.460 8 N -0.270 5.270 9 N -0.289 5.289 10 C 0.402 3.598 11 O -0.485 6.485 12 N -0.296 5.296 13 C -0.077 4.077 14 C -0.120 4.120 15 C -0.203 4.203 16 C 0.071 3.929 17 C -0.523 4.523 18 H 0.102 0.898 19 C -0.184 4.184 20 N -0.455 5.455 21 Si 0.804 3.196 22 H -0.189 1.189 23 H -0.197 1.197 24 H -0.175 1.175 25 C -0.242 4.242 26 C -0.111 4.111 27 H 0.252 0.748 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.281 0.719 35 H 0.283 0.717 36 H 0.251 0.749 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.131 0.869 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.041 15.163 -4.159 23.931 hybrid contribution 0.269 -0.575 0.401 0.751 sum -17.772 14.588 -3.758 23.298 Atomic orbital electron populations 1.25696 0.97205 1.00429 1.01147 1.23913 0.95980 1.00855 1.00594 1.18880 0.83395 0.97848 1.04584 1.21207 0.93628 0.96787 1.01926 1.21744 0.96152 0.91404 1.06680 1.21957 0.79343 0.91827 0.76833 1.90759 1.55662 1.48502 1.51091 1.45144 1.07959 1.06014 1.67868 1.44477 1.03968 1.08774 1.71674 1.15899 0.80188 0.84127 0.79539 1.91026 1.75607 1.26686 1.55154 1.41669 1.03759 1.12954 1.71192 1.16977 0.81617 1.08114 1.00994 1.20598 0.94557 0.98760 0.98097 1.20863 0.93210 1.05123 1.01064 1.18030 0.93977 0.90761 0.90087 1.19856 0.93261 1.03989 1.35159 0.89824 1.26853 1.04934 0.94231 0.92408 1.69954 1.39585 1.03588 1.32366 0.85166 0.76337 0.78530 0.79521 1.18944 1.19701 1.17499 1.20827 0.95030 1.06928 1.01378 1.20398 0.93270 1.01085 0.96359 0.74817 0.87188 0.87208 0.92677 0.92641 0.84248 0.84291 0.71858 0.71716 0.74892 0.88780 0.88910 0.90347 0.86868 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.11 19.25 74.32 1.43 -1.67 16 2 C -0.21 -3.01 13.34 31.13 0.42 -2.59 16 3 C -0.01 -0.08 5.70 28.79 0.16 0.09 16 4 C -0.10 -1.01 4.46 30.59 0.14 -0.87 16 5 C -0.12 -0.61 5.70 29.85 0.17 -0.44 16 6 C 0.51 8.17 7.95 87.66 0.70 8.86 16 7 O -0.58 -15.29 15.82 -3.06 -0.05 -15.34 16 8 N -0.52 -8.12 6.25 -173.53 -1.09 -9.20 16 9 N -0.53 -13.88 6.26 -184.75 -1.16 -15.04 16 10 C 0.70 24.21 8.51 179.06 1.52 25.73 16 11 O -0.61 -28.12 14.62 -3.98 -0.06 -28.17 16 12 N -0.65 -19.69 5.26 -316.79 -1.67 -21.35 16 13 C 0.02 0.69 6.30 38.56 0.24 0.93 16 14 C -0.10 -5.02 8.61 22.13 0.19 -4.83 16 15 C -0.18 -10.07 8.63 22.48 0.19 -9.87 16 16 C 0.07 3.97 5.57 -21.28 -0.12 3.85 16 17 C -0.49 -26.34 9.03 23.39 0.21 -26.12 16 18 H 0.08 4.20 7.91 -2.91 -0.02 4.17 16 19 C 0.03 1.55 5.13 85.23 0.44 1.99 16 20 N -0.83 -45.40 10.99 21.82 0.24 -45.16 16 21 Si 0.98 38.56 29.60 68.60 2.03 40.59 16 22 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 23 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 24 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 25 C -0.22 -10.09 9.74 22.48 0.22 -9.87 16 26 C -0.09 -3.51 9.90 22.13 0.22 -3.29 16 27 H 0.24 1.71 7.80 -4.43 -0.03 1.67 16 28 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 31 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 32 H 0.14 -0.17 8.14 -2.39 -0.02 -0.19 16 33 H 0.14 -0.15 8.14 -2.38 -0.02 -0.17 16 34 H 0.44 3.53 6.72 -213.31 -1.43 2.10 16 35 H 0.44 12.24 8.10 -213.32 -1.73 10.51 16 36 H 0.41 7.91 6.76 -92.71 -0.63 7.28 16 37 H 0.09 4.91 6.25 -2.91 -0.02 4.90 16 38 H 0.09 5.49 6.20 -2.91 -0.02 5.47 16 39 H 0.29 14.29 8.30 -92.71 -0.77 13.52 16 40 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 41 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -81.00 360.85 1.70 -79.31 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: -2.69 Total: 32.47 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: 6.13 Total: -18.10 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -3.67 Total: -90.75 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -0.11 Total: -43.51 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -81.00 1.70 -79.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929430431.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.279 kcal (2) G-P(sol) polarization free energy of solvation -81.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds