Wall clock time and date at job start Tue Mar 31 2020 11:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47232 * 2 1 4 4 H 1.08999 * 109.46710 * 305.00017 * 3 2 1 5 5 C 1.50703 * 109.46900 * 185.00032 * 3 2 1 6 6 H 1.07995 * 119.99573 * 239.99664 * 5 3 2 7 7 C 1.37871 * 119.99913 * 60.00146 * 5 3 2 8 8 N 1.31509 * 120.00440 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99752 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47280 * 60.00021 * 9 7 5 11 11 H 1.48504 * 109.46826 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47340 * 299.99801 * 9 7 5 13 13 N 1.46501 * 109.46923 * 64.99961 * 3 2 1 14 14 C 1.34769 * 120.00039 * 275.00141 * 13 3 2 15 15 O 1.21589 * 120.00127 * 359.97438 * 14 13 3 16 16 N 1.34777 * 120.00076 * 180.02562 * 14 13 3 17 17 C 1.39765 * 120.00247 * 174.68173 * 16 14 13 18 18 C 1.38996 * 119.94886 * 326.41576 * 17 16 14 19 19 C 1.37848 * 120.04344 * 179.76461 * 18 17 16 20 20 C 1.39403 * 119.95298 * 0.52793 * 19 18 17 21 21 C 1.48356 * 120.04758 * 179.70150 * 20 19 18 22 22 C 1.42315 * 126.94360 * 0.02562 * 21 20 19 23 23 C 1.35205 * 103.93643 * 179.97438 * 22 21 20 24 24 O 1.34075 * 106.69399 * 0.02562 * 23 22 21 25 25 N 1.20915 * 111.83804 * 359.74431 * 24 23 22 26 26 C 1.39408 * 119.90127 * 359.72394 * 20 19 18 27 27 C 1.37839 * 119.95229 * 0.02562 * 26 20 19 28 28 H 1.09000 * 109.47304 * 60.00127 * 1 2 3 29 29 H 1.09001 * 109.47390 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46868 * 300.00272 * 1 2 3 31 31 H 1.09003 * 109.47307 * 239.99906 * 2 1 3 32 32 H 1.09000 * 109.47304 * 119.99873 * 2 1 3 33 33 H 0.96996 * 120.00629 * 179.97438 * 8 7 5 34 34 H 0.96998 * 119.99766 * 95.00125 * 13 3 2 35 35 H 0.97001 * 119.99683 * 354.68005 * 16 14 13 36 36 H 1.07997 * 119.97753 * 359.97438 * 18 17 16 37 37 H 1.08001 * 120.02188 * 180.27439 * 19 18 17 38 38 H 1.08000 * 128.03139 * 359.92845 * 22 21 20 39 39 H 1.08000 * 126.65233 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.02057 * 179.97438 * 26 20 19 41 41 H 1.08000 * 119.97475 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8783 -1.2280 8 7 3.4062 0.3366 -2.1728 9 14 6.0049 0.8811 -1.3818 10 1 6.5975 0.1471 -0.2349 11 1 6.3977 0.2176 -2.6510 12 1 6.4996 2.2813 -1.3821 13 7 1.6524 2.0975 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3412 2.6326 0.4318 16 7 0.0788 3.2673 2.5185 17 6 -1.1373 3.9511 2.6020 18 6 -1.6379 4.6153 1.4884 19 6 -2.8395 5.2862 1.5673 20 6 -3.5473 5.3074 2.7681 21 6 -4.8375 6.0344 2.8571 22 6 -5.4866 6.7555 1.8160 23 6 -6.6132 7.2245 2.3981 24 8 -6.5958 6.7987 3.6693 25 7 -5.6117 6.1383 3.9091 26 6 -3.0407 4.6449 3.8852 27 6 -1.8413 3.9709 3.8004 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8292 -0.0612 -2.9498 34 1 2.2719 2.1231 1.9978 35 1 0.6664 3.2267 3.2892 36 1 -1.0867 4.6029 0.5597 37 1 -3.2303 5.7985 0.7005 38 1 -5.1557 6.8961 0.7976 39 1 -7.3782 7.8262 1.9301 40 1 -3.5873 4.6604 4.8165 41 1 -1.4483 3.4579 4.6657 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933721721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:38 Heat of formation + Delta-G solvation = 58.310243 kcal Electronic energy + Delta-G solvation = -25041.074329 eV Core-core repulsion = 21310.454266 eV Total energy + Delta-G solvation = -3730.620063 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.04204 -40.31474 -38.62327 -35.75911 -34.68524 -33.65116 -32.43546 -31.95462 -30.97482 -30.86411 -29.04677 -26.89712 -24.08658 -23.76257 -22.95232 -22.08155 -21.34438 -20.40104 -19.56093 -18.34660 -18.21587 -17.70251 -17.46420 -16.14329 -16.04763 -15.35074 -15.06282 -14.72205 -14.34312 -14.14445 -13.87504 -13.58179 -13.39215 -13.17903 -13.04236 -12.68749 -12.31186 -12.03793 -11.76782 -11.60629 -11.28314 -11.20145 -11.02753 -10.93691 -10.83636 -10.36152 -10.21666 -9.98736 -9.79363 -9.58927 -9.44875 -9.09451 -8.91688 -8.54606 -8.01518 -7.69057 -6.16316 -4.26055 0.80224 1.39830 1.44431 2.38240 3.05144 3.11169 3.22785 3.28599 3.30443 3.64819 3.90845 4.02806 4.28486 4.30210 4.82034 4.91562 4.98048 4.99086 5.13577 5.15465 5.22688 5.35950 5.59125 5.68291 5.71675 6.03759 6.26939 6.36957 6.38396 6.45268 6.50271 6.60350 6.65204 6.97366 7.05797 7.14210 7.30346 7.33313 7.40410 7.60275 7.81913 7.92649 8.07159 8.14443 8.67568 8.78685 9.17834 9.42057 10.88970 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.032736 B = 0.002357 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.118205 B =11877.039954 C =11962.115244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.717 5.717 14 C 0.691 3.309 15 O -0.573 6.573 16 N -0.697 5.697 17 C 0.202 3.798 18 C -0.123 4.123 19 C -0.069 4.069 20 C -0.063 4.063 21 C 0.071 3.929 22 C -0.226 4.226 23 C -0.061 4.061 24 O 0.098 5.902 25 N -0.365 5.365 26 C -0.068 4.068 27 C -0.160 4.160 28 H 0.050 0.950 29 H 0.021 0.979 30 H 0.038 0.962 31 H 0.100 0.900 32 H 0.030 0.970 33 H 0.266 0.734 34 H 0.386 0.614 35 H 0.403 0.597 36 H 0.146 0.854 37 H 0.127 0.873 38 H 0.173 0.827 39 H 0.217 0.783 40 H 0.127 0.873 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.145 11.444 10.056 20.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.368 5.368 14 C 0.392 3.608 15 O -0.450 6.450 16 N -0.344 5.344 17 C 0.104 3.896 18 C -0.143 4.143 19 C -0.089 4.089 20 C -0.065 4.065 21 C -0.086 4.086 22 C -0.247 4.247 23 C -0.142 4.142 24 O 0.031 5.969 25 N -0.069 5.069 26 C -0.088 4.088 27 C -0.181 4.181 28 H 0.069 0.931 29 H 0.040 0.960 30 H 0.057 0.943 31 H 0.118 0.882 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.218 0.782 35 H 0.238 0.762 36 H 0.163 0.837 37 H 0.145 0.855 38 H 0.191 0.809 39 H 0.233 0.767 40 H 0.145 0.855 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.670 10.785 10.178 20.859 hybrid contribution 1.676 0.091 -0.299 1.705 sum -12.994 10.876 9.879 19.615 Atomic orbital electron populations 1.21816 0.98240 0.97967 1.01268 1.21966 0.92697 0.99853 1.02278 1.18739 0.94038 0.88914 0.79842 0.93153 1.21170 0.90591 1.39285 1.06379 0.92134 1.24870 0.98636 0.94750 0.95350 1.69876 1.35270 1.37383 1.09323 0.86503 0.84761 0.78316 0.77480 1.20168 1.21105 1.20187 1.45864 1.12922 1.58654 1.19344 1.16121 0.83661 0.78770 0.82252 1.90914 1.51642 1.64329 1.38133 1.42948 1.20158 1.56020 1.15279 1.17680 0.86109 0.91376 0.94423 1.21204 0.97031 0.96560 0.99554 1.20931 0.94018 0.97886 0.96073 1.17570 0.91931 1.01923 0.95110 1.22117 0.96698 1.00015 0.89722 1.22831 0.96332 1.03415 1.02139 1.25915 1.01055 1.02341 0.84858 1.84809 1.34411 1.49785 1.27910 1.74129 0.96986 1.12449 1.23358 1.20862 0.94792 0.95406 0.97693 1.20774 0.95699 1.03933 0.97710 0.93121 0.95956 0.94341 0.88216 0.95081 0.92431 0.78173 0.76174 0.83667 0.85529 0.80915 0.76679 0.85465 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.70 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 3 C 0.29 6.96 2.24 -69.08 -0.15 6.81 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.70 8.73 -34.44 -0.30 -14.00 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.17 11.29 55.43 0.63 -23.54 16 9 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 13 N -0.72 -14.13 5.03 -59.81 -0.30 -14.43 16 14 C 0.69 13.16 6.86 -86.92 -0.60 12.57 16 15 O -0.57 -12.79 11.17 5.29 0.06 -12.73 16 16 N -0.70 -10.18 5.34 -14.21 -0.08 -10.25 16 17 C 0.20 2.93 6.28 -83.68 -0.53 2.41 16 18 C -0.12 -1.86 8.63 -39.44 -0.34 -2.20 16 19 C -0.07 -0.89 9.59 -39.29 -0.38 -1.27 16 20 C -0.06 -0.82 5.88 -104.86 -0.62 -1.44 16 21 C 0.07 0.86 7.06 -82.48 -0.58 0.28 16 22 C -0.23 -2.01 10.51 -39.10 -0.41 -2.42 16 23 C -0.06 -0.42 12.27 29.65 0.36 -0.06 16 24 O 0.10 0.99 11.18 17.08 0.19 1.18 16 25 N -0.37 -4.58 11.81 33.32 0.39 -4.19 16 26 C -0.07 -0.85 9.69 -39.29 -0.38 -1.23 16 27 C -0.16 -1.98 9.95 -39.45 -0.39 -2.37 16 28 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 31 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.39 6.50 8.56 -40.82 -0.35 6.15 16 35 H 0.40 4.49 8.83 -40.82 -0.36 4.13 16 36 H 0.15 2.49 6.42 -52.49 -0.34 2.15 16 37 H 0.13 1.33 7.22 -52.49 -0.38 0.95 16 38 H 0.17 1.13 7.57 -52.49 -0.40 0.74 16 39 H 0.22 0.46 8.06 -52.49 -0.42 0.03 16 40 H 0.13 1.47 7.89 -52.49 -0.41 1.06 16 41 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 345.57 15.07 5.21 5.21 Total: -1.00 -31.41 345.57 -8.03 -39.44 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -4.87 Total: 11.34 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -4.24 Total: -7.18 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.64 Total: -52.41 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.25 Total: -11.55 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.41 -8.03 -39.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933721721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.754 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds