Wall clock time and date at job start Tue Mar 31 2020 11:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47232 * 2 1 4 4 H 1.08999 * 109.46710 * 305.00017 * 3 2 1 5 5 C 1.50703 * 109.46900 * 185.00032 * 3 2 1 6 6 H 1.07995 * 119.99573 * 239.99664 * 5 3 2 7 7 C 1.37871 * 119.99913 * 60.00146 * 5 3 2 8 8 N 1.31509 * 120.00440 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99752 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47280 * 60.00021 * 9 7 5 11 11 H 1.48504 * 109.46826 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47340 * 299.99801 * 9 7 5 13 13 N 1.46501 * 109.46923 * 64.99961 * 3 2 1 14 14 C 1.34769 * 120.00039 * 275.00141 * 13 3 2 15 15 O 1.21589 * 120.00127 * 359.97438 * 14 13 3 16 16 N 1.34777 * 120.00076 * 180.02562 * 14 13 3 17 17 C 1.39765 * 120.00247 * 174.68173 * 16 14 13 18 18 C 1.38996 * 119.94886 * 326.41576 * 17 16 14 19 19 C 1.37848 * 120.04344 * 179.76461 * 18 17 16 20 20 C 1.39403 * 119.95298 * 0.52793 * 19 18 17 21 21 C 1.48356 * 120.04758 * 179.70150 * 20 19 18 22 22 C 1.42315 * 126.94360 * 0.02562 * 21 20 19 23 23 C 1.35205 * 103.93643 * 179.97438 * 22 21 20 24 24 O 1.34075 * 106.69399 * 0.02562 * 23 22 21 25 25 N 1.20915 * 111.83804 * 359.74431 * 24 23 22 26 26 C 1.39408 * 119.90127 * 359.72394 * 20 19 18 27 27 C 1.37839 * 119.95229 * 0.02562 * 26 20 19 28 28 H 1.09000 * 109.47304 * 60.00127 * 1 2 3 29 29 H 1.09001 * 109.47390 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46868 * 300.00272 * 1 2 3 31 31 H 1.09003 * 109.47307 * 239.99906 * 2 1 3 32 32 H 1.09000 * 109.47304 * 119.99873 * 2 1 3 33 33 H 0.96996 * 120.00629 * 179.97438 * 8 7 5 34 34 H 0.96998 * 119.99766 * 95.00125 * 13 3 2 35 35 H 0.97001 * 119.99683 * 354.68005 * 16 14 13 36 36 H 1.07997 * 119.97753 * 359.97438 * 18 17 16 37 37 H 1.08001 * 120.02188 * 180.27439 * 19 18 17 38 38 H 1.08000 * 128.03139 * 359.92845 * 22 21 20 39 39 H 1.08000 * 126.65233 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.02057 * 179.97438 * 26 20 19 41 41 H 1.08000 * 119.97475 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8783 -1.2280 8 7 3.4062 0.3366 -2.1728 9 14 6.0049 0.8811 -1.3818 10 1 6.5975 0.1471 -0.2349 11 1 6.3977 0.2176 -2.6510 12 1 6.4996 2.2813 -1.3821 13 7 1.6524 2.0975 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3412 2.6326 0.4318 16 7 0.0788 3.2673 2.5185 17 6 -1.1373 3.9511 2.6020 18 6 -1.6379 4.6153 1.4884 19 6 -2.8395 5.2862 1.5673 20 6 -3.5473 5.3074 2.7681 21 6 -4.8375 6.0344 2.8571 22 6 -5.4866 6.7555 1.8160 23 6 -6.6132 7.2245 2.3981 24 8 -6.5958 6.7987 3.6693 25 7 -5.6117 6.1383 3.9091 26 6 -3.0407 4.6449 3.8852 27 6 -1.8413 3.9709 3.8004 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8292 -0.0612 -2.9498 34 1 2.2719 2.1231 1.9978 35 1 0.6664 3.2267 3.2892 36 1 -1.0867 4.6029 0.5597 37 1 -3.2303 5.7985 0.7005 38 1 -5.1557 6.8961 0.7976 39 1 -7.3782 7.8262 1.9301 40 1 -3.5873 4.6604 4.8165 41 1 -1.4483 3.4579 4.6657 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933721721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:38 Heat of formation + Delta-G solvation = 38.235906 kcal Electronic energy + Delta-G solvation = -25041.944817 eV Core-core repulsion = 21310.454266 eV Total energy + Delta-G solvation = -3731.490552 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.82246 -41.66244 -39.87298 -37.30804 -36.04905 -34.75998 -34.19879 -32.82301 -32.60163 -31.91778 -30.24368 -28.73236 -25.38976 -24.71855 -24.54788 -23.00752 -22.59544 -21.61238 -21.31121 -19.75337 -19.12856 -18.71838 -18.49993 -17.84651 -17.19711 -16.86653 -16.56831 -15.98898 -15.83861 -15.24298 -14.94668 -14.88292 -14.54481 -14.44118 -14.35958 -13.91981 -13.82557 -13.50684 -13.18180 -13.04267 -12.88792 -12.65873 -12.63245 -12.23278 -12.17359 -12.06356 -11.90033 -11.58016 -11.15075 -11.02706 -10.81149 -10.56989 -10.52481 -9.97564 -9.68981 -8.86463 -8.15152 -6.32180 -0.18459 0.40141 0.76204 1.45138 1.47495 1.47725 1.55292 1.78731 2.24681 2.43075 2.48007 2.90152 3.07977 3.14509 3.44665 3.57983 3.96939 3.99156 4.24620 4.35903 4.42598 4.49387 4.50577 4.57424 4.58106 4.76141 4.78840 4.98905 5.07071 5.09672 5.22195 5.26715 5.32967 5.44332 5.47815 5.50479 5.56035 5.62003 5.76463 5.87418 5.99205 6.17561 6.27642 6.75557 7.24391 7.34589 7.36093 7.70753 8.90047 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.032736 B = 0.002357 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.118205 B =11877.039954 C =11962.115244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.297 3.703 4 H 0.002 0.998 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.265 1.265 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.714 5.714 14 C 0.693 3.307 15 O -0.609 6.609 16 N -0.678 5.678 17 C 0.178 3.822 18 C -0.141 4.141 19 C -0.069 4.069 20 C -0.063 4.063 21 C 0.042 3.958 22 C -0.241 4.241 23 C -0.036 4.036 24 O 0.095 5.905 25 N -0.392 5.392 26 C -0.075 4.075 27 C -0.145 4.145 28 H 0.026 0.974 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.265 0.735 34 H 0.402 0.598 35 H 0.422 0.578 36 H 0.118 0.882 37 H 0.146 0.854 38 H 0.193 0.807 39 H 0.267 0.733 40 H 0.138 0.862 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.797 12.423 11.689 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.161 4.161 3 C 0.193 3.807 4 H 0.019 0.981 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.794 3.206 10 H -0.190 1.190 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.366 5.366 14 C 0.393 3.607 15 O -0.489 6.489 16 N -0.327 5.327 17 C 0.081 3.919 18 C -0.162 4.162 19 C -0.089 4.089 20 C -0.065 4.065 21 C -0.113 4.113 22 C -0.262 4.262 23 C -0.116 4.116 24 O 0.027 5.973 25 N -0.096 5.096 26 C -0.094 4.094 27 C -0.166 4.166 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.237 0.763 35 H 0.260 0.740 36 H 0.136 0.864 37 H 0.164 0.836 38 H 0.210 0.790 39 H 0.283 0.717 40 H 0.156 0.844 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.316 11.788 11.891 22.692 hybrid contribution 1.684 -0.084 -0.788 1.861 sum -13.632 11.704 11.103 21.121 Atomic orbital electron populations 1.21638 0.97083 0.98853 1.00170 1.21813 0.93602 0.99345 1.01310 1.18278 0.93438 0.88785 0.80199 0.98056 1.21524 0.91320 1.39017 1.06736 0.90981 1.25734 1.03172 0.94402 0.95045 1.70032 1.37099 1.38241 1.09841 0.85442 0.79237 0.78393 0.77510 1.18976 1.21306 1.19729 1.45458 1.13756 1.58878 1.18538 1.16169 0.82977 0.78608 0.82928 1.90897 1.52587 1.65521 1.39876 1.42562 1.20633 1.55114 1.14397 1.17841 0.86450 0.92360 0.95231 1.21112 0.98013 0.98150 0.98929 1.21056 0.93232 0.97601 0.97032 1.17789 0.92352 1.01340 0.94992 1.22287 0.96771 1.01204 0.91069 1.23175 0.96855 1.03523 1.02664 1.26810 1.01081 1.00618 0.83109 1.84762 1.33592 1.49390 1.29534 1.74124 0.97789 1.13566 1.24164 1.21091 0.94935 0.95290 0.98125 1.20977 0.95053 1.03018 0.97551 0.95504 0.93921 0.94077 0.90901 0.94089 0.92575 0.76305 0.74017 0.86398 0.83632 0.79005 0.71737 0.84412 0.82617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.51 71.98 0.61 -4.82 16 2 C -0.12 -5.91 5.45 30.59 0.17 -5.74 16 3 C 0.30 14.82 2.24 44.25 0.10 14.92 16 4 H 0.00 0.09 7.58 -2.39 -0.02 0.07 16 5 C -0.55 -28.20 8.73 25.60 0.22 -27.97 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.89 5.29 84.65 0.45 1.33 16 8 N -0.91 -51.44 11.29 21.44 0.24 -51.20 16 9 Si 0.97 41.29 29.54 68.60 2.03 43.32 16 10 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 11 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 13 N -0.71 -28.32 5.03 -461.41 -2.32 -30.64 16 14 C 0.69 26.77 6.86 179.06 1.23 27.99 16 15 O -0.61 -28.31 11.17 -4.00 -0.04 -28.35 16 16 N -0.68 -19.46 5.34 -317.12 -1.69 -21.16 16 17 C 0.18 5.11 6.28 38.24 0.24 5.35 16 18 C -0.14 -4.39 8.63 22.36 0.19 -4.20 16 19 C -0.07 -1.79 9.59 22.46 0.22 -1.58 16 20 C -0.06 -1.59 5.88 -20.02 -0.12 -1.70 16 21 C 0.04 0.97 7.06 42.97 0.30 1.27 16 22 C -0.24 -3.74 10.51 22.58 0.24 -3.50 16 23 C -0.04 -0.38 12.27 67.12 0.82 0.44 16 24 O 0.09 1.72 11.18 71.31 0.80 2.52 16 25 N -0.39 -9.35 11.81 -49.43 -0.58 -9.93 16 26 C -0.07 -1.79 9.69 22.46 0.22 -1.57 16 27 C -0.15 -3.38 9.95 22.36 0.22 -3.16 16 28 H 0.03 1.30 7.84 -2.39 -0.02 1.28 16 29 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.04 1.81 5.64 -2.39 -0.01 1.80 16 31 H 0.07 3.97 5.95 -2.39 -0.01 3.95 16 32 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 34 H 0.40 13.21 8.56 -92.71 -0.79 12.42 16 35 H 0.42 8.74 8.83 -92.71 -0.82 7.92 16 36 H 0.12 4.31 6.42 -2.91 -0.02 4.29 16 37 H 0.15 3.02 7.22 -2.91 -0.02 3.00 16 38 H 0.19 2.06 7.57 -2.91 -0.02 2.03 16 39 H 0.27 -0.22 8.06 -2.91 -0.02 -0.24 16 40 H 0.14 3.00 7.89 -2.91 -0.02 2.97 16 41 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -71.02 345.57 3.02 -68.00 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.52 Total: 30.38 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 5.11 Total: -2.94 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -4.35 Total: -112.92 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: 0.75 Total: -25.84 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -71.02 3.02 -68.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933721721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.235 kcal (2) G-P(sol) polarization free energy of solvation -71.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds