Wall clock time and date at job start Tue Mar 31 2020 11:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47207 * 2 1 4 4 C 1.52995 * 109.47207 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47353 * 180.02562 * 4 3 2 6 6 C 1.36935 * 119.99763 * 89.99935 * 5 4 3 7 7 H 1.07999 * 120.00095 * 27.26358 * 6 5 4 8 8 C 1.38811 * 119.99558 * 207.53736 * 6 5 4 9 9 N 1.31616 * 119.99944 * 209.05296 * 8 6 5 10 10 Si 1.86801 * 120.00097 * 29.05519 * 8 6 5 11 11 H 1.48494 * 109.47361 * 0.06142 * 10 8 6 12 12 H 1.48500 * 109.47111 * 120.06591 * 10 8 6 13 13 H 1.48503 * 109.46880 * 240.06306 * 10 8 6 14 14 C 1.46501 * 119.99804 * 270.00190 * 5 4 3 15 15 C 1.50695 * 109.47254 * 275.49082 * 14 5 4 16 16 C 1.38254 * 119.92988 * 274.17864 * 15 14 5 17 17 C 1.38238 * 120.14587 * 179.72889 * 16 15 14 18 18 C 1.38562 * 120.00023 * 0.53905 * 17 16 15 19 19 O 1.35994 * 120.07086 * 179.71121 * 18 17 16 20 20 C 1.42898 * 117.00293 * 0.02562 * 19 18 17 21 21 F 1.39904 * 109.46692 * 299.99923 * 20 19 18 22 22 F 1.39891 * 109.47390 * 60.00143 * 20 19 18 23 23 C 1.39149 * 119.85357 * 359.72994 * 18 17 16 24 24 O 1.36004 * 120.07266 * 180.02562 * 23 18 17 25 25 C 1.38245 * 119.92355 * 94.44325 * 15 14 5 26 26 H 1.09004 * 109.47073 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47225 * 299.99702 * 1 2 3 28 28 H 1.09002 * 109.47253 * 59.99991 * 1 2 3 29 29 H 1.08997 * 109.47225 * 240.00298 * 2 1 3 30 30 H 1.09002 * 109.47703 * 120.00298 * 2 1 3 31 31 H 1.09003 * 109.46906 * 60.00474 * 3 2 1 32 32 H 1.08995 * 109.47380 * 300.00143 * 3 2 1 33 33 H 1.08997 * 109.47225 * 60.00298 * 4 3 2 34 34 H 1.09002 * 109.47253 * 300.00009 * 4 3 2 35 35 H 0.97004 * 120.00100 * 180.02562 * 9 8 6 36 36 H 1.08995 * 109.47132 * 35.49816 * 14 5 4 37 37 H 1.09000 * 109.46835 * 155.49363 * 14 5 4 38 38 H 1.08001 * 119.92342 * 359.97293 * 16 15 14 39 39 H 1.08007 * 119.99936 * 180.25138 * 17 16 15 40 40 H 1.09003 * 109.47175 * 180.02562 * 20 19 18 41 41 H 0.96690 * 113.99652 * 269.97876 * 24 23 18 42 42 H 1.07999 * 120.00023 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2861 3.4689 1.1875 7 1 4.5396 2.9015 2.0708 8 6 4.1854 4.8516 1.2559 9 7 4.9074 5.5216 2.1289 10 14 3.0253 5.7616 0.1089 11 1 2.3319 4.7860 -0.7700 12 1 2.0213 6.5072 0.9098 13 1 3.8005 6.7151 -0.7248 14 6 4.3030 3.5147 -1.2672 15 6 5.6810 3.1692 -1.7698 16 6 6.7756 3.8932 -1.3348 17 6 8.0423 3.5765 -1.7886 18 6 8.2159 2.5386 -2.6901 19 8 9.4608 2.2296 -3.1420 20 6 10.5453 3.0163 -2.6450 21 9 10.3433 4.3577 -2.9872 22 9 10.6100 2.8948 -1.2529 23 6 7.1137 1.8135 -3.1322 24 8 7.2790 0.7935 -4.0165 25 6 5.8472 2.1324 -2.6691 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.9336 0.9286 -0.8891 34 1 3.9329 0.9288 0.8909 35 1 4.8369 6.4879 2.1770 36 1 3.5597 3.2020 -2.0005 37 1 4.2316 4.5915 -1.1140 38 1 6.6410 4.7055 -0.6358 39 1 8.8962 4.1410 -1.4441 40 1 11.4794 2.6662 -3.0844 41 1 7.2238 1.0638 -4.9433 42 1 4.9901 1.5709 -3.0103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140630573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:20 Heat of formation + Delta-G solvation = -144.666337 kcal Electronic energy + Delta-G solvation = -27052.230372 eV Core-core repulsion = 22862.119397 eV Total energy + Delta-G solvation = -4190.110974 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.33951 -47.33488 -40.06643 -37.82612 -37.06583 -35.86062 -34.07072 -31.72889 -30.55432 -29.60090 -28.22504 -26.56902 -24.99566 -24.08701 -22.57190 -21.62560 -21.00726 -20.01069 -19.01057 -18.34336 -17.90847 -17.45821 -16.77540 -16.07664 -15.55810 -15.07475 -14.98507 -14.75208 -14.49522 -14.27709 -13.97552 -13.76380 -13.62416 -13.53912 -13.46576 -13.00268 -12.89920 -12.56877 -12.31971 -12.18135 -12.09914 -11.83297 -11.33591 -11.18536 -11.06207 -10.86998 -10.67907 -10.59831 -10.43696 -10.29347 -10.01023 -9.88002 -9.43698 -8.62151 -8.49603 -7.88120 -7.05249 -6.05727 -3.31383 1.57650 1.60490 2.59970 3.28686 3.45246 3.45514 3.47779 3.91284 4.25624 4.33353 4.48032 4.61670 4.99259 5.13730 5.19171 5.27348 5.33762 5.46627 5.53705 5.59949 5.71652 5.81196 5.87270 5.91986 6.10851 6.19845 6.25789 6.27530 6.31864 6.42278 6.44925 6.49999 6.59627 6.67560 6.83174 6.87021 7.05088 7.14650 7.19814 7.84465 7.92509 8.29004 8.90967 9.67235 10.04008 11.09299 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012732 B = 0.004569 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.604207 B = 6126.157224 C = 7550.036008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.152 3.848 5 N -0.595 5.595 6 C -0.263 4.263 7 H 0.083 0.917 8 C 0.033 3.967 9 N -0.888 5.888 10 Si 0.854 3.146 11 H -0.264 1.264 12 H -0.298 1.298 13 H -0.289 1.289 14 C 0.184 3.816 15 C -0.089 4.089 16 C -0.060 4.060 17 C -0.175 4.175 18 C 0.060 3.940 19 O -0.317 6.317 20 C 0.409 3.591 21 F -0.202 7.202 22 F -0.197 7.197 23 C 0.081 3.919 24 O -0.489 6.489 25 C -0.110 4.110 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.051 0.949 35 H 0.263 0.737 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.176 0.824 41 H 0.380 0.620 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.366 -6.772 -12.545 15.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.026 3.974 5 N -0.315 5.315 6 C -0.391 4.391 7 H 0.101 0.899 8 C -0.167 4.167 9 N -0.529 5.529 10 Si 0.683 3.317 11 H -0.189 1.189 12 H -0.227 1.227 13 H -0.216 1.216 14 C 0.058 3.942 15 C -0.092 4.092 16 C -0.079 4.079 17 C -0.194 4.194 18 C 0.017 3.983 19 O -0.235 6.235 20 C 0.319 3.681 21 F -0.183 7.183 22 F -0.179 7.179 23 C 0.036 3.964 24 O -0.297 6.297 25 C -0.130 4.130 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.193 0.807 41 H 0.234 0.766 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.510 -7.077 -12.006 14.986 hybrid contribution -0.568 1.250 -0.669 1.527 sum 4.941 -5.827 -12.675 14.799 Atomic orbital electron populations 1.21767 0.96688 1.00657 1.01614 1.21496 0.95142 0.98091 1.01312 1.22214 0.99043 0.94803 1.01952 1.20891 0.91219 0.85901 0.99408 1.44160 1.74348 1.11492 1.01476 1.18818 1.41959 0.89982 0.88356 0.89905 1.25212 0.98366 0.96297 0.96837 1.69983 1.37218 1.07300 1.38366 0.87223 0.83571 0.79737 0.81174 1.18884 1.22676 1.21639 1.20143 0.89275 0.96665 0.88070 1.20972 0.99137 0.94743 0.94378 1.21074 0.90540 0.99457 0.96840 1.21430 0.99746 0.98428 0.99796 1.19162 0.83064 0.96988 0.99115 1.86605 1.14061 1.56458 1.66387 1.23302 0.92610 0.75594 0.76604 1.93092 1.95896 1.37583 1.91767 1.93115 1.96631 1.95341 1.32838 1.17606 0.89888 0.91323 0.97586 1.84897 1.94569 1.31798 1.18449 1.21109 0.95144 0.97617 0.99100 0.93491 0.92880 0.93175 0.92704 0.92338 0.91686 0.93147 0.94175 0.93011 0.92758 0.93218 0.92299 0.84465 0.85095 0.80718 0.76575 0.85100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.12 -1.71 5.93 -26.73 -0.16 -1.87 16 3 C -0.14 -2.43 5.54 -26.73 -0.15 -2.58 16 4 C 0.15 2.93 5.69 -4.04 -0.02 2.90 16 5 N -0.59 -13.53 2.22 -174.61 -0.39 -13.92 16 6 C -0.26 -7.04 9.95 -15.06 -0.15 -7.19 16 7 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 8 C 0.03 0.91 5.23 -17.43 -0.09 0.82 16 9 N -0.89 -26.07 13.97 55.49 0.78 -25.30 16 10 Si 0.85 21.01 25.15 -169.99 -4.28 16.73 16 11 H -0.26 -6.18 6.24 56.52 0.35 -5.83 16 12 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 C 0.18 3.87 4.06 -5.20 -0.02 3.85 16 15 C -0.09 -1.73 5.46 -104.62 -0.57 -2.30 16 16 C -0.06 -1.21 9.71 -39.58 -0.38 -1.60 16 17 C -0.18 -3.18 8.26 -39.46 -0.33 -3.50 16 18 C 0.06 1.02 6.50 -39.12 -0.25 0.76 16 19 O -0.32 -4.55 10.22 -34.22 -0.35 -4.90 16 20 C 0.41 4.60 5.98 101.05 0.60 5.20 16 21 F -0.20 -2.56 15.58 2.25 0.04 -2.52 16 22 F -0.20 -2.74 15.59 2.25 0.04 -2.70 16 23 C 0.08 1.33 6.72 -39.12 -0.26 1.07 16 24 O -0.49 -6.91 13.29 -34.25 -0.46 -7.37 16 25 C -0.11 -1.87 9.51 -39.46 -0.38 -2.25 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.71 7.97 -51.93 -0.41 0.30 16 34 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.05 0.94 8.02 -51.93 -0.42 0.52 16 37 H 0.06 1.34 3.07 -51.93 -0.16 1.19 16 38 H 0.14 3.04 8.06 -52.49 -0.42 2.61 16 39 H 0.13 2.26 5.10 -52.48 -0.27 2.00 16 40 H 0.18 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.38 3.44 9.06 45.56 0.41 3.86 16 42 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 353.79 15.07 5.33 5.33 Total: -1.00 -31.65 353.79 -6.18 -37.83 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -5.10 Total: 4.98 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -1.79 Total: -8.17 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.39 Total: -39.21 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.80 Total: -12.27 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.07 Total: -5.22 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.28 Total: 16.73 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.65 -6.18 -37.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140630573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.835 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds