Wall clock time and date at job start Tue Mar 31 2020 11:15:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53000 * 109.47207 * 2 1
4 4 C 1.52995 * 109.47207 * 179.97438 * 3 2 1
5 5 N 1.46505 * 109.47353 * 180.02562 * 4 3 2
6 6 C 1.36935 * 119.99763 * 89.99935 * 5 4 3
7 7 H 1.07999 * 120.00095 * 27.26358 * 6 5 4
8 8 C 1.38811 * 119.99558 * 207.53736 * 6 5 4
9 9 N 1.31616 * 119.99944 * 209.05296 * 8 6 5
10 10 Si 1.86801 * 120.00097 * 29.05519 * 8 6 5
11 11 H 1.48494 * 109.47361 * 0.06142 * 10 8 6
12 12 H 1.48500 * 109.47111 * 120.06591 * 10 8 6
13 13 H 1.48503 * 109.46880 * 240.06306 * 10 8 6
14 14 C 1.46501 * 119.99804 * 270.00190 * 5 4 3
15 15 C 1.50695 * 109.47254 * 275.49082 * 14 5 4
16 16 C 1.38254 * 119.92988 * 274.17864 * 15 14 5
17 17 C 1.38238 * 120.14587 * 179.72889 * 16 15 14
18 18 C 1.38562 * 120.00023 * 0.53905 * 17 16 15
19 19 O 1.35994 * 120.07086 * 179.71121 * 18 17 16
20 20 C 1.42898 * 117.00293 * 0.02562 * 19 18 17
21 21 F 1.39904 * 109.46692 * 299.99923 * 20 19 18
22 22 F 1.39891 * 109.47390 * 60.00143 * 20 19 18
23 23 C 1.39149 * 119.85357 * 359.72994 * 18 17 16
24 24 O 1.36004 * 120.07266 * 180.02562 * 23 18 17
25 25 C 1.38245 * 119.92355 * 94.44325 * 15 14 5
26 26 H 1.09004 * 109.47073 * 179.97438 * 1 2 3
27 27 H 1.08997 * 109.47225 * 299.99702 * 1 2 3
28 28 H 1.09002 * 109.47253 * 59.99991 * 1 2 3
29 29 H 1.08997 * 109.47225 * 240.00298 * 2 1 3
30 30 H 1.09002 * 109.47703 * 120.00298 * 2 1 3
31 31 H 1.09003 * 109.46906 * 60.00474 * 3 2 1
32 32 H 1.08995 * 109.47380 * 300.00143 * 3 2 1
33 33 H 1.08997 * 109.47225 * 60.00298 * 4 3 2
34 34 H 1.09002 * 109.47253 * 300.00009 * 4 3 2
35 35 H 0.97004 * 120.00100 * 180.02562 * 9 8 6
36 36 H 1.08995 * 109.47132 * 35.49816 * 14 5 4
37 37 H 1.09000 * 109.46835 * 155.49363 * 14 5 4
38 38 H 1.08001 * 119.92342 * 359.97293 * 16 15 14
39 39 H 1.08007 * 119.99936 * 180.25138 * 17 16 15
40 40 H 1.09003 * 109.47175 * 180.02562 * 20 19 18
41 41 H 0.96690 * 113.99652 * 269.97876 * 24 23 18
42 42 H 1.07999 * 120.00023 * 359.97438 * 25 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5699 1.4425 0.0006
5 7 4.0583 2.8237 0.0013
6 6 4.2861 3.4689 1.1875
7 1 4.5396 2.9015 2.0708
8 6 4.1854 4.8516 1.2559
9 7 4.9074 5.5216 2.1289
10 14 3.0253 5.7616 0.1089
11 1 2.3319 4.7860 -0.7700
12 1 2.0213 6.5072 0.9098
13 1 3.8005 6.7151 -0.7248
14 6 4.3030 3.5147 -1.2672
15 6 5.6810 3.1692 -1.7698
16 6 6.7756 3.8932 -1.3348
17 6 8.0423 3.5765 -1.7886
18 6 8.2159 2.5386 -2.6901
19 8 9.4608 2.2296 -3.1420
20 6 10.5453 3.0163 -2.6450
21 9 10.3433 4.3577 -2.9872
22 9 10.6100 2.8948 -1.2529
23 6 7.1137 1.8135 -3.1322
24 8 7.2790 0.7935 -4.0165
25 6 5.8472 2.1324 -2.6691
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3633 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 1.8933 -0.5138 -0.8900
30 1 1.8934 -0.5139 0.8899
31 1 1.6767 1.9563 0.8901
32 1 1.6767 1.9564 -0.8899
33 1 3.9336 0.9286 -0.8891
34 1 3.9329 0.9288 0.8909
35 1 4.8369 6.4879 2.1770
36 1 3.5597 3.2020 -2.0005
37 1 4.2316 4.5915 -1.1140
38 1 6.6410 4.7055 -0.6358
39 1 8.8962 4.1410 -1.4441
40 1 11.4794 2.6662 -3.0844
41 1 7.2238 1.0638 -4.9433
42 1 4.9901 1.5709 -3.0103
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001140630573.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:15:20
Heat of formation + Delta-G solvation = -144.666337 kcal
Electronic energy + Delta-G solvation = -27052.230372 eV
Core-core repulsion = 22862.119397 eV
Total energy + Delta-G solvation = -4190.110974 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.143 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-49.33951 -47.33488 -40.06643 -37.82612 -37.06583 -35.86062 -34.07072 -31.72889
-30.55432 -29.60090 -28.22504 -26.56902 -24.99566 -24.08701 -22.57190 -21.62560
-21.00726 -20.01069 -19.01057 -18.34336 -17.90847 -17.45821 -16.77540 -16.07664
-15.55810 -15.07475 -14.98507 -14.75208 -14.49522 -14.27709 -13.97552 -13.76380
-13.62416 -13.53912 -13.46576 -13.00268 -12.89920 -12.56877 -12.31971 -12.18135
-12.09914 -11.83297 -11.33591 -11.18536 -11.06207 -10.86998 -10.67907 -10.59831
-10.43696 -10.29347 -10.01023 -9.88002 -9.43698 -8.62151 -8.49603 -7.88120
-7.05249 -6.05727 -3.31383 1.57650 1.60490 2.59970 3.28686 3.45246
3.45514 3.47779 3.91284 4.25624 4.33353 4.48032 4.61670 4.99259
5.13730 5.19171 5.27348 5.33762 5.46627 5.53705 5.59949 5.71652
5.81196 5.87270 5.91986 6.10851 6.19845 6.25789 6.27530 6.31864
6.42278 6.44925 6.49999 6.59627 6.67560 6.83174 6.87021 7.05088
7.14650 7.19814 7.84465 7.92509 8.29004 8.90967 9.67235 10.04008
11.09299
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.012732 B = 0.004569 C = 0.003708
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2198.604207 B = 6126.157224 C = 7550.036008
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.122 4.122
3 C -0.140 4.140
4 C 0.152 3.848
5 N -0.595 5.595
6 C -0.263 4.263
7 H 0.083 0.917
8 C 0.033 3.967
9 N -0.888 5.888
10 Si 0.854 3.146
11 H -0.264 1.264
12 H -0.298 1.298
13 H -0.289 1.289
14 C 0.184 3.816
15 C -0.089 4.089
16 C -0.060 4.060
17 C -0.175 4.175
18 C 0.060 3.940
19 O -0.317 6.317
20 C 0.409 3.591
21 F -0.202 7.202
22 F -0.197 7.197
23 C 0.081 3.919
24 O -0.489 6.489
25 C -0.110 4.110
26 H 0.046 0.954
27 H 0.052 0.948
28 H 0.049 0.951
29 H 0.054 0.946
30 H 0.058 0.942
31 H 0.064 0.936
32 H 0.050 0.950
33 H 0.040 0.960
34 H 0.051 0.949
35 H 0.263 0.737
36 H 0.050 0.950
37 H 0.059 0.941
38 H 0.138 0.862
39 H 0.131 0.869
40 H 0.176 0.824
41 H 0.380 0.620
42 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.366 -6.772 -12.545 15.232
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.160 4.160
3 C -0.180 4.180
4 C 0.026 3.974
5 N -0.315 5.315
6 C -0.391 4.391
7 H 0.101 0.899
8 C -0.167 4.167
9 N -0.529 5.529
10 Si 0.683 3.317
11 H -0.189 1.189
12 H -0.227 1.227
13 H -0.216 1.216
14 C 0.058 3.942
15 C -0.092 4.092
16 C -0.079 4.079
17 C -0.194 4.194
18 C 0.017 3.983
19 O -0.235 6.235
20 C 0.319 3.681
21 F -0.183 7.183
22 F -0.179 7.179
23 C 0.036 3.964
24 O -0.297 6.297
25 C -0.130 4.130
26 H 0.065 0.935
27 H 0.071 0.929
28 H 0.068 0.932
29 H 0.073 0.927
30 H 0.077 0.923
31 H 0.083 0.917
32 H 0.069 0.931
33 H 0.058 0.942
34 H 0.070 0.930
35 H 0.072 0.928
36 H 0.068 0.932
37 H 0.077 0.923
38 H 0.155 0.845
39 H 0.149 0.851
40 H 0.193 0.807
41 H 0.234 0.766
42 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 5.510 -7.077 -12.006 14.986
hybrid contribution -0.568 1.250 -0.669 1.527
sum 4.941 -5.827 -12.675 14.799
Atomic orbital electron populations
1.21767 0.96688 1.00657 1.01614 1.21496 0.95142 0.98091 1.01312
1.22214 0.99043 0.94803 1.01952 1.20891 0.91219 0.85901 0.99408
1.44160 1.74348 1.11492 1.01476 1.18818 1.41959 0.89982 0.88356
0.89905 1.25212 0.98366 0.96297 0.96837 1.69983 1.37218 1.07300
1.38366 0.87223 0.83571 0.79737 0.81174 1.18884 1.22676 1.21639
1.20143 0.89275 0.96665 0.88070 1.20972 0.99137 0.94743 0.94378
1.21074 0.90540 0.99457 0.96840 1.21430 0.99746 0.98428 0.99796
1.19162 0.83064 0.96988 0.99115 1.86605 1.14061 1.56458 1.66387
1.23302 0.92610 0.75594 0.76604 1.93092 1.95896 1.37583 1.91767
1.93115 1.96631 1.95341 1.32838 1.17606 0.89888 0.91323 0.97586
1.84897 1.94569 1.31798 1.18449 1.21109 0.95144 0.97617 0.99100
0.93491 0.92880 0.93175 0.92704 0.92338 0.91686 0.93147 0.94175
0.93011 0.92758 0.93218 0.92299 0.84465 0.85095 0.80718 0.76575
0.85100
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 16
2 C -0.12 -1.71 5.93 -26.73 -0.16 -1.87 16
3 C -0.14 -2.43 5.54 -26.73 -0.15 -2.58 16
4 C 0.15 2.93 5.69 -4.04 -0.02 2.90 16
5 N -0.59 -13.53 2.22 -174.61 -0.39 -13.92 16
6 C -0.26 -7.04 9.95 -15.06 -0.15 -7.19 16
7 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16
8 C 0.03 0.91 5.23 -17.43 -0.09 0.82 16
9 N -0.89 -26.07 13.97 55.49 0.78 -25.30 16
10 Si 0.85 21.01 25.15 -169.99 -4.28 16.73 16
11 H -0.26 -6.18 6.24 56.52 0.35 -5.83 16
12 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16
13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
14 C 0.18 3.87 4.06 -5.20 -0.02 3.85 16
15 C -0.09 -1.73 5.46 -104.62 -0.57 -2.30 16
16 C -0.06 -1.21 9.71 -39.58 -0.38 -1.60 16
17 C -0.18 -3.18 8.26 -39.46 -0.33 -3.50 16
18 C 0.06 1.02 6.50 -39.12 -0.25 0.76 16
19 O -0.32 -4.55 10.22 -34.22 -0.35 -4.90 16
20 C 0.41 4.60 5.98 101.05 0.60 5.20 16
21 F -0.20 -2.56 15.58 2.25 0.04 -2.52 16
22 F -0.20 -2.74 15.59 2.25 0.04 -2.70 16
23 C 0.08 1.33 6.72 -39.12 -0.26 1.07 16
24 O -0.49 -6.91 13.29 -34.25 -0.46 -7.37 16
25 C -0.11 -1.87 9.51 -39.46 -0.38 -2.25 16
26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16
27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
32 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16
33 H 0.04 0.71 7.97 -51.93 -0.41 0.30 16
34 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16
35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
36 H 0.05 0.94 8.02 -51.93 -0.42 0.52 16
37 H 0.06 1.34 3.07 -51.93 -0.16 1.19 16
38 H 0.14 3.04 8.06 -52.49 -0.42 2.61 16
39 H 0.13 2.26 5.10 -52.48 -0.27 2.00 16
40 H 0.18 0.98 8.14 -51.93 -0.42 0.55 16
41 H 0.38 3.44 9.06 45.56 0.41 3.86 16
42 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16
LS Contribution 353.79 15.07 5.33 5.33
Total: -1.00 -31.65 353.79 -6.18 -37.83
By element:
Atomic # 1 Polarization: 10.08 SS G_CDS: -5.10 Total: 4.98 kcal
Atomic # 6 Polarization: -6.38 SS G_CDS: -1.79 Total: -8.17 kcal
Atomic # 7 Polarization: -39.60 SS G_CDS: 0.39 Total: -39.21 kcal
Atomic # 8 Polarization: -11.47 SS G_CDS: -0.80 Total: -12.27 kcal
Atomic # 9 Polarization: -5.29 SS G_CDS: 0.07 Total: -5.22 kcal
Atomic # 14 Polarization: 21.01 SS G_CDS: -4.28 Total: 16.73 kcal
Total LS contribution 5.33 Total: 5.33 kcal
Total: -31.65 -6.18 -37.83 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001140630573.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -106.835 kcal
(2) G-P(sol) polarization free energy of solvation -31.651 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.486 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.181 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.831 kcal
(6) G-S(sol) free energy of system = (1) + (5) -144.666 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds