Wall clock time and date at job start Tue Mar 31 2020 11:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47207 * 2 1 4 4 C 1.52995 * 109.47207 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47353 * 180.02562 * 4 3 2 6 6 C 1.36935 * 119.99763 * 89.99935 * 5 4 3 7 7 H 1.07999 * 120.00095 * 27.26358 * 6 5 4 8 8 C 1.38811 * 119.99558 * 207.53736 * 6 5 4 9 9 N 1.31616 * 119.99944 * 209.05296 * 8 6 5 10 10 Si 1.86801 * 120.00097 * 29.05519 * 8 6 5 11 11 H 1.48494 * 109.47361 * 0.06142 * 10 8 6 12 12 H 1.48500 * 109.47111 * 120.06591 * 10 8 6 13 13 H 1.48503 * 109.46880 * 240.06306 * 10 8 6 14 14 C 1.46501 * 119.99804 * 270.00190 * 5 4 3 15 15 C 1.50695 * 109.47254 * 275.49082 * 14 5 4 16 16 C 1.38254 * 119.92988 * 274.17864 * 15 14 5 17 17 C 1.38238 * 120.14587 * 179.72889 * 16 15 14 18 18 C 1.38562 * 120.00023 * 0.53905 * 17 16 15 19 19 O 1.35994 * 120.07086 * 179.71121 * 18 17 16 20 20 C 1.42898 * 117.00293 * 0.02562 * 19 18 17 21 21 F 1.39904 * 109.46692 * 299.99923 * 20 19 18 22 22 F 1.39891 * 109.47390 * 60.00143 * 20 19 18 23 23 C 1.39149 * 119.85357 * 359.72994 * 18 17 16 24 24 O 1.36004 * 120.07266 * 180.02562 * 23 18 17 25 25 C 1.38245 * 119.92355 * 94.44325 * 15 14 5 26 26 H 1.09004 * 109.47073 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47225 * 299.99702 * 1 2 3 28 28 H 1.09002 * 109.47253 * 59.99991 * 1 2 3 29 29 H 1.08997 * 109.47225 * 240.00298 * 2 1 3 30 30 H 1.09002 * 109.47703 * 120.00298 * 2 1 3 31 31 H 1.09003 * 109.46906 * 60.00474 * 3 2 1 32 32 H 1.08995 * 109.47380 * 300.00143 * 3 2 1 33 33 H 1.08997 * 109.47225 * 60.00298 * 4 3 2 34 34 H 1.09002 * 109.47253 * 300.00009 * 4 3 2 35 35 H 0.97004 * 120.00100 * 180.02562 * 9 8 6 36 36 H 1.08995 * 109.47132 * 35.49816 * 14 5 4 37 37 H 1.09000 * 109.46835 * 155.49363 * 14 5 4 38 38 H 1.08001 * 119.92342 * 359.97293 * 16 15 14 39 39 H 1.08007 * 119.99936 * 180.25138 * 17 16 15 40 40 H 1.09003 * 109.47175 * 180.02562 * 20 19 18 41 41 H 0.96690 * 113.99652 * 269.97876 * 24 23 18 42 42 H 1.07999 * 120.00023 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2861 3.4689 1.1875 7 1 4.5396 2.9015 2.0708 8 6 4.1854 4.8516 1.2559 9 7 4.9074 5.5216 2.1289 10 14 3.0253 5.7616 0.1089 11 1 2.3319 4.7860 -0.7700 12 1 2.0213 6.5072 0.9098 13 1 3.8005 6.7151 -0.7248 14 6 4.3030 3.5147 -1.2672 15 6 5.6810 3.1692 -1.7698 16 6 6.7756 3.8932 -1.3348 17 6 8.0423 3.5765 -1.7886 18 6 8.2159 2.5386 -2.6901 19 8 9.4608 2.2296 -3.1420 20 6 10.5453 3.0163 -2.6450 21 9 10.3433 4.3577 -2.9872 22 9 10.6100 2.8948 -1.2529 23 6 7.1137 1.8135 -3.1322 24 8 7.2790 0.7935 -4.0165 25 6 5.8472 2.1324 -2.6691 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.9336 0.9286 -0.8891 34 1 3.9329 0.9288 0.8909 35 1 4.8369 6.4879 2.1770 36 1 3.5597 3.2020 -2.0005 37 1 4.2316 4.5915 -1.1140 38 1 6.6410 4.7055 -0.6358 39 1 8.8962 4.1410 -1.4441 40 1 11.4794 2.6662 -3.0844 41 1 7.2238 1.0638 -4.9433 42 1 4.9901 1.5709 -3.0103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140630573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:19 Heat of formation + Delta-G solvation = -165.026312 kcal Electronic energy + Delta-G solvation = -27053.113246 eV Core-core repulsion = 22862.119397 eV Total energy + Delta-G solvation = -4190.993849 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.31776 -48.32877 -41.35472 -39.16125 -38.39256 -37.25005 -35.49133 -33.67962 -31.98677 -30.95075 -29.64583 -27.91280 -26.43500 -25.61407 -23.90686 -23.01849 -22.35734 -21.52672 -20.15590 -19.53929 -18.90257 -18.81971 -18.43676 -17.40896 -17.07484 -16.53982 -16.30652 -16.13362 -16.00341 -15.58344 -15.25734 -14.92257 -14.86287 -14.74116 -14.68111 -14.56287 -14.21633 -14.11278 -13.84955 -13.48007 -13.41869 -13.10346 -12.79776 -12.74694 -12.58187 -12.43319 -12.13911 -11.99137 -11.87373 -11.72741 -11.57775 -11.30619 -11.24028 -10.67986 -9.87314 -9.27438 -8.93627 -8.19190 -5.41300 0.20109 0.21403 1.29944 1.42763 1.49688 1.59287 2.41760 2.50184 2.56742 3.05037 3.14755 3.46314 3.49903 3.67698 3.77243 3.92636 4.05111 4.17606 4.26364 4.35613 4.39420 4.43634 4.46455 4.56690 4.75514 4.86190 4.90192 5.00254 5.06700 5.07089 5.10444 5.20375 5.21152 5.42044 5.48567 5.51268 5.62719 5.67641 5.88834 5.92861 6.15027 6.84236 6.95064 7.66082 8.03859 9.00221 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012732 B = 0.004569 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.604207 B = 6126.157224 C = 7550.036008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.131 4.131 4 C 0.149 3.851 5 N -0.606 5.606 6 C -0.248 4.248 7 H 0.043 0.957 8 C -0.018 4.018 9 N -0.939 5.939 10 Si 0.917 3.083 11 H -0.241 1.241 12 H -0.311 1.311 13 H -0.289 1.289 14 C 0.182 3.818 15 C -0.102 4.102 16 C -0.085 4.085 17 C -0.181 4.181 18 C 0.063 3.937 19 O -0.317 6.317 20 C 0.401 3.599 21 F -0.211 7.211 22 F -0.215 7.215 23 C 0.092 3.908 24 O -0.489 6.489 25 C -0.101 4.101 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.037 0.963 35 H 0.260 0.740 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.102 0.898 39 H 0.131 0.869 40 H 0.241 0.759 41 H 0.407 0.593 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.137 -9.053 -15.944 19.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.171 4.171 4 C 0.025 3.975 5 N -0.327 5.327 6 C -0.377 4.377 7 H 0.061 0.939 8 C -0.214 4.214 9 N -0.583 5.583 10 Si 0.746 3.254 11 H -0.164 1.164 12 H -0.240 1.240 13 H -0.217 1.217 14 C 0.057 3.943 15 C -0.106 4.106 16 C -0.104 4.104 17 C -0.200 4.200 18 C 0.019 3.981 19 O -0.235 6.235 20 C 0.312 3.688 21 F -0.193 7.193 22 F -0.197 7.197 23 C 0.047 3.953 24 O -0.301 6.301 25 C -0.119 4.119 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.120 0.880 39 H 0.149 0.851 40 H 0.257 0.743 41 H 0.265 0.735 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.273 -9.393 -15.471 18.852 hybrid contribution -0.319 1.825 0.314 1.879 sum 4.954 -7.567 -15.157 17.651 Atomic orbital electron populations 1.21749 0.95377 1.01971 1.01470 1.21448 0.96256 0.95571 1.02182 1.22074 0.97263 0.97057 1.00709 1.21025 0.92617 0.84017 0.99878 1.44248 1.75186 1.12487 1.00783 1.18629 1.40250 0.89860 0.89001 0.93911 1.25698 0.99677 0.97149 0.98887 1.70093 1.39425 1.07348 1.41451 0.86214 0.81088 0.78714 0.79393 1.16403 1.23987 1.21671 1.20172 0.91104 0.95277 0.87714 1.20763 0.97745 0.96083 0.95969 1.20877 0.92196 0.99688 0.97653 1.21389 0.98866 0.99322 1.00430 1.19256 0.84655 0.96091 0.98109 1.86618 1.13500 1.57072 1.66267 1.24409 0.93491 0.75005 0.75901 1.93072 1.95971 1.38575 1.91714 1.93082 1.96621 1.95373 1.34662 1.17603 0.89428 0.90826 0.97489 1.84835 1.94367 1.30841 1.20022 1.21263 0.96465 0.96471 0.97747 0.91462 0.93717 0.92697 0.90884 0.92421 0.94442 0.92823 0.91677 0.94470 0.93067 0.90240 0.94531 0.88006 0.85115 0.74345 0.73474 0.82363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.91 71.98 0.71 -2.58 16 2 C -0.12 -2.95 5.93 30.59 0.18 -2.77 16 3 C -0.13 -4.35 5.54 30.59 0.17 -4.18 16 4 C 0.15 5.60 5.69 86.38 0.49 6.09 16 5 N -0.61 -27.61 2.22 -706.36 -1.57 -29.18 16 6 C -0.25 -13.83 9.95 84.03 0.84 -13.00 16 7 H 0.04 2.68 8.06 -2.91 -0.02 2.65 16 8 C -0.02 -1.03 5.23 84.86 0.44 -0.58 16 9 N -0.94 -58.31 13.97 21.65 0.30 -58.00 16 10 Si 0.92 44.96 25.15 68.60 1.73 46.69 16 11 H -0.24 -10.70 6.24 99.48 0.62 -10.08 16 12 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 13 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 14 C 0.18 7.48 4.06 85.63 0.35 7.82 16 15 C -0.10 -3.91 5.46 -19.86 -0.11 -4.02 16 16 C -0.08 -3.53 9.71 22.27 0.22 -3.31 16 17 C -0.18 -6.59 8.26 22.35 0.18 -6.41 16 18 C 0.06 2.01 6.50 22.57 0.15 2.15 16 19 O -0.32 -8.19 10.22 -79.62 -0.81 -9.00 16 20 C 0.40 7.99 5.98 113.37 0.68 8.67 16 21 F -0.21 -5.04 15.58 44.97 0.70 -4.34 16 22 F -0.22 -5.73 15.59 44.97 0.70 -5.03 16 23 C 0.09 2.73 6.72 22.57 0.15 2.88 16 24 O -0.49 -11.64 13.29 -79.74 -1.06 -12.69 16 25 C -0.10 -3.10 9.51 22.35 0.21 -2.89 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 2.11 7.97 -2.39 -0.02 2.09 16 34 H 0.04 1.48 8.04 -2.39 -0.02 1.46 16 35 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.08 2.76 8.02 -2.39 -0.02 2.74 16 37 H 0.04 1.66 3.07 -2.39 -0.01 1.66 16 38 H 0.10 4.88 8.06 -2.91 -0.02 4.85 16 39 H 0.13 4.63 5.10 -2.91 -0.01 4.62 16 40 H 0.24 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.41 5.35 9.06 -74.06 -0.67 4.68 16 42 H 0.16 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -72.50 353.79 4.94 -67.57 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.29 Total: 16.11 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 4.66 Total: -12.12 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -1.27 Total: -87.18 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -1.87 Total: -21.70 kcal Atomic # 9 Polarization: -10.77 SS G_CDS: 1.40 Total: -9.37 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.73 Total: 46.69 kcal Total: -72.50 4.94 -67.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140630573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.459 kcal (2) G-P(sol) polarization free energy of solvation -72.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds