Wall clock time and date at job start Tue Mar 31 2020 11:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46806 * 2 1 4 4 C 1.53008 * 109.46880 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47111 * 179.97438 * 4 3 2 6 6 C 1.36447 * 120.00395 * 264.46544 * 5 4 3 7 7 H 1.07996 * 120.00353 * 132.07452 * 6 5 4 8 8 C 1.39359 * 119.99366 * 312.06944 * 6 5 4 9 9 N 1.31161 * 120.00629 * 3.27184 * 8 6 5 10 10 Si 1.86804 * 119.99741 * 183.27034 * 8 6 5 11 11 H 1.48505 * 109.47213 * 89.99883 * 10 8 6 12 12 H 1.48499 * 109.47274 * 209.99831 * 10 8 6 13 13 H 1.48496 * 109.47213 * 330.00270 * 10 8 6 14 14 C 1.34785 * 119.99953 * 84.46081 * 5 4 3 15 15 O 1.21641 * 119.99410 * 4.81660 * 14 5 4 16 16 C 1.47518 * 119.99972 * 184.81483 * 14 5 4 17 17 N 1.31475 * 119.98487 * 354.27292 * 16 14 5 18 18 C 1.34015 * 120.99057 * 179.73101 * 17 16 14 19 19 C 1.40723 * 120.02307 * 179.77767 * 18 17 16 20 20 C 1.36289 * 119.94093 * 180.28415 * 19 18 17 21 21 C 1.39009 * 120.70170 * 0.23504 * 20 19 18 22 22 C 1.37790 * 120.58453 * 0.02562 * 21 20 19 23 23 C 1.39146 * 119.87381 * 0.02562 * 22 21 20 24 24 N 1.37988 * 120.25305 * 180.02562 * 23 22 21 25 25 H 0.97000 * 120.47159 * 359.97438 * 24 23 22 26 26 C 1.35102 * 119.05649 * 179.97438 * 24 23 22 27 27 O 1.21715 * 120.45361 * 180.02562 * 26 24 23 28 28 H 1.08996 * 109.47276 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47376 * 299.99957 * 1 2 3 30 30 H 1.09003 * 109.47171 * 59.99652 * 1 2 3 31 31 H 1.08997 * 109.47079 * 240.00757 * 2 1 3 32 32 H 1.09000 * 109.47493 * 119.99653 * 2 1 3 33 33 H 1.09003 * 109.47341 * 60.00593 * 3 2 1 34 34 H 1.08997 * 109.47622 * 299.99660 * 3 2 1 35 35 H 1.09003 * 109.46363 * 60.00344 * 4 3 2 36 36 H 1.08997 * 109.47001 * 300.00391 * 4 3 2 37 37 H 0.97003 * 120.00521 * 180.02562 * 9 8 6 38 38 H 1.07999 * 120.02397 * 0.56432 * 19 18 17 39 39 H 1.07998 * 119.64385 * 180.25467 * 20 19 18 40 40 H 1.08003 * 119.70933 * 180.02562 * 21 20 19 41 41 H 1.07994 * 120.06383 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.3936 3.4284 -1.1763 7 1 4.0272 4.4199 -1.3976 8 6 5.2091 2.7663 -2.0922 9 7 5.6017 1.5380 -1.8527 10 14 5.7432 3.6285 -3.6610 11 1 7.0200 4.3477 -3.4205 12 1 5.9363 2.6235 -4.7370 13 1 4.6979 4.5997 -4.0724 14 6 4.1762 3.4974 1.1615 15 8 3.9614 2.9320 2.2169 16 6 4.5658 4.9202 1.1527 17 7 4.9070 5.5010 0.0237 18 6 5.2592 6.7937 -0.0084 19 6 5.6254 7.3937 -1.2275 20 6 5.9888 8.7068 -1.2572 21 6 6.0075 9.4647 -0.0920 22 6 5.6589 8.9015 1.1162 23 6 5.2849 7.5625 1.1746 24 7 4.9338 6.9906 2.3803 25 1 4.9451 7.5159 3.1957 26 6 4.5742 5.6887 2.4091 27 8 4.2593 5.1586 3.4585 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9336 0.9286 -0.8892 36 1 3.9329 0.9288 0.8908 37 1 6.1697 1.0773 -2.4901 38 1 5.6140 6.8151 -2.1394 39 1 6.2650 9.1635 -2.1961 40 1 6.2977 10.5041 -0.1341 41 1 5.6767 9.4979 2.0164 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151855013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:02 Heat of formation + Delta-G solvation = -4.364904 kcal Electronic energy + Delta-G solvation = -26522.699725 eV Core-core repulsion = 22789.361864 eV Total energy + Delta-G solvation = -3733.337861 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.09790 -38.71880 -38.10334 -35.79659 -35.28979 -34.68642 -33.93680 -31.63571 -30.41103 -29.48627 -28.32628 -25.56371 -24.80313 -23.65399 -22.77755 -22.40884 -20.59007 -19.86592 -18.68673 -18.32041 -17.61446 -16.73849 -15.76737 -15.41568 -15.04830 -14.95295 -14.75538 -14.48525 -14.34828 -14.16534 -13.85154 -13.66368 -13.08617 -12.94470 -12.87173 -12.20365 -12.08213 -11.86848 -11.76125 -11.42515 -11.35006 -11.21495 -11.14453 -10.74384 -10.62865 -10.58309 -10.47792 -10.32511 -10.20352 -9.73858 -9.19593 -8.91596 -8.51972 -8.31438 -7.78163 -7.41571 -6.47405 -4.09996 0.35387 1.30795 2.17361 2.94270 3.02802 3.12693 3.16249 3.17043 3.89090 3.99605 4.26976 4.50860 4.59368 4.67508 4.87799 4.93622 5.13043 5.24332 5.39337 5.51952 5.55513 5.61015 5.68878 5.92934 6.01983 6.11021 6.16966 6.27508 6.34743 6.41510 6.45483 6.48560 6.60831 6.72340 6.76064 6.85444 6.86281 6.99869 7.13262 7.31350 7.55321 7.93636 8.12837 8.29710 8.42735 8.92439 9.37306 9.84936 10.48037 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012083 B = 0.005560 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.670479 B = 5034.423609 C = 6726.132222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.129 4.129 4 C 0.107 3.893 5 N -0.403 5.403 6 C -0.272 4.272 7 H 0.117 0.883 8 C 0.039 3.961 9 N -0.850 5.850 10 Si 0.923 3.077 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.263 1.263 14 C 0.508 3.492 15 O -0.576 6.576 16 C 0.081 3.919 17 N -0.357 5.357 18 C 0.036 3.964 19 C -0.041 4.041 20 C -0.150 4.150 21 C -0.078 4.078 22 C -0.163 4.163 23 C 0.137 3.863 24 N -0.631 5.631 25 H 0.411 0.589 26 C 0.510 3.490 27 O -0.486 6.486 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.119 0.881 36 H 0.056 0.944 37 H 0.275 0.725 38 H 0.139 0.861 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.746 10.778 -2.446 11.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.168 4.168 4 C -0.015 4.015 5 N -0.120 5.120 6 C -0.404 4.404 7 H 0.135 0.865 8 C -0.168 4.168 9 N -0.486 5.486 10 Si 0.749 3.251 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.187 1.187 14 C 0.297 3.703 15 O -0.460 6.460 16 C -0.092 4.092 17 N -0.074 5.074 18 C -0.077 4.077 19 C -0.060 4.060 20 C -0.169 4.169 21 C -0.098 4.098 22 C -0.184 4.184 23 C 0.032 3.968 24 N -0.274 5.274 25 H 0.250 0.750 26 C 0.298 3.702 27 O -0.356 6.356 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.136 0.864 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.157 0.843 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.915 9.549 -2.238 9.850 hybrid contribution 0.548 1.288 0.280 1.427 sum -0.367 10.837 -1.958 11.018 Atomic orbital electron populations 1.21758 0.96659 1.00682 1.01484 1.21408 0.94934 0.97528 1.01732 1.21928 0.97600 0.95812 1.01440 1.21743 0.91137 0.84170 1.04480 1.43482 1.51728 1.11786 1.04971 1.20276 1.24886 1.02130 0.93118 0.86546 1.25754 0.95482 0.95470 1.00138 1.69618 1.31883 1.10651 1.36484 0.85975 0.79708 0.79370 0.80067 1.19741 1.20880 1.18743 1.17486 0.83925 0.84185 0.84712 1.90751 1.56702 1.68092 1.30426 1.24354 1.01563 0.96723 0.86569 1.69174 1.05069 1.06281 1.26886 1.18931 1.05699 0.91056 0.92032 1.20899 0.94406 0.94411 0.96295 1.20738 1.03400 0.94158 0.98638 1.21045 0.97291 0.99667 0.91771 1.20678 1.05953 0.92536 0.99270 1.19066 0.97567 0.94055 0.86097 1.43764 1.62095 1.12224 1.09278 0.74957 1.19494 0.78487 0.80885 0.91297 1.90930 1.45140 1.67813 1.31733 0.93409 0.93072 0.93059 0.92109 0.92302 0.92810 0.92265 0.86378 0.92507 0.91440 0.84304 0.85357 0.85489 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.74 16 2 C -0.12 -1.97 5.93 -26.73 -0.16 -2.13 16 3 C -0.13 -2.61 5.50 -26.72 -0.15 -2.76 16 4 C 0.11 2.53 4.88 -4.04 -0.02 2.51 16 5 N -0.40 -10.22 2.50 -116.02 -0.29 -10.51 16 6 C -0.27 -6.66 7.48 -15.08 -0.11 -6.78 16 7 H 0.12 2.79 5.98 -52.49 -0.31 2.47 16 8 C 0.04 0.94 5.35 -17.42 -0.09 0.85 16 9 N -0.85 -21.27 10.97 55.52 0.61 -20.66 16 10 Si 0.92 18.48 29.56 -169.99 -5.02 13.45 16 11 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 12 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 13 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 14 C 0.51 13.40 7.57 -12.47 -0.09 13.31 16 15 O -0.58 -16.64 15.10 -15.54 -0.23 -16.87 16 16 C 0.08 1.91 6.86 -80.56 -0.55 1.36 16 17 N -0.36 -7.64 6.37 -6.07 -0.04 -7.68 16 18 C 0.04 0.65 6.58 -84.89 -0.56 0.09 16 19 C -0.04 -0.60 9.96 -39.35 -0.39 -0.99 16 20 C -0.15 -1.70 9.96 -40.00 -0.40 -2.10 16 21 C -0.08 -0.80 10.03 -39.46 -0.40 -1.20 16 22 C -0.16 -1.88 9.90 -39.41 -0.39 -2.27 16 23 C 0.14 2.12 6.63 -83.67 -0.55 1.57 16 24 N -0.63 -10.32 5.40 -10.63 -0.06 -10.37 16 25 H 0.41 5.29 8.83 -40.82 -0.36 4.93 16 26 C 0.51 11.03 7.92 -12.44 -0.10 10.93 16 27 O -0.49 -11.99 16.32 -15.60 -0.25 -12.24 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.12 2.88 5.50 -51.93 -0.29 2.59 16 36 H 0.06 1.41 7.53 -51.93 -0.39 1.02 16 37 H 0.27 6.46 8.30 -40.82 -0.34 6.13 16 38 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 39 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 41 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 347.36 15.07 5.23 5.23 Total: -1.00 -31.20 347.36 -8.79 -39.99 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.14 Total: 9.01 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: -3.60 Total: 10.65 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.22 Total: -49.22 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.49 Total: -29.11 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.45 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.20 -8.79 -39.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151855013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.621 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds