Wall clock time and date at job start Tue Mar 31 2020 11:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46806 * 2 1 4 4 C 1.53008 * 109.46880 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47111 * 179.97438 * 4 3 2 6 6 C 1.36447 * 120.00395 * 264.46544 * 5 4 3 7 7 H 1.07996 * 120.00353 * 132.07452 * 6 5 4 8 8 C 1.39359 * 119.99366 * 312.06944 * 6 5 4 9 9 N 1.31161 * 120.00629 * 3.27184 * 8 6 5 10 10 Si 1.86804 * 119.99741 * 183.27034 * 8 6 5 11 11 H 1.48505 * 109.47213 * 89.99883 * 10 8 6 12 12 H 1.48499 * 109.47274 * 209.99831 * 10 8 6 13 13 H 1.48496 * 109.47213 * 330.00270 * 10 8 6 14 14 C 1.34785 * 119.99953 * 84.46081 * 5 4 3 15 15 O 1.21641 * 119.99410 * 4.81660 * 14 5 4 16 16 C 1.47518 * 119.99972 * 184.81483 * 14 5 4 17 17 N 1.31475 * 119.98487 * 354.27292 * 16 14 5 18 18 C 1.34015 * 120.99057 * 179.73101 * 17 16 14 19 19 C 1.40723 * 120.02307 * 179.77767 * 18 17 16 20 20 C 1.36289 * 119.94093 * 180.28415 * 19 18 17 21 21 C 1.39009 * 120.70170 * 0.23504 * 20 19 18 22 22 C 1.37790 * 120.58453 * 0.02562 * 21 20 19 23 23 C 1.39146 * 119.87381 * 0.02562 * 22 21 20 24 24 N 1.37988 * 120.25305 * 180.02562 * 23 22 21 25 25 H 0.97000 * 120.47159 * 359.97438 * 24 23 22 26 26 C 1.35102 * 119.05649 * 179.97438 * 24 23 22 27 27 O 1.21715 * 120.45361 * 180.02562 * 26 24 23 28 28 H 1.08996 * 109.47276 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47376 * 299.99957 * 1 2 3 30 30 H 1.09003 * 109.47171 * 59.99652 * 1 2 3 31 31 H 1.08997 * 109.47079 * 240.00757 * 2 1 3 32 32 H 1.09000 * 109.47493 * 119.99653 * 2 1 3 33 33 H 1.09003 * 109.47341 * 60.00593 * 3 2 1 34 34 H 1.08997 * 109.47622 * 299.99660 * 3 2 1 35 35 H 1.09003 * 109.46363 * 60.00344 * 4 3 2 36 36 H 1.08997 * 109.47001 * 300.00391 * 4 3 2 37 37 H 0.97003 * 120.00521 * 180.02562 * 9 8 6 38 38 H 1.07999 * 120.02397 * 0.56432 * 19 18 17 39 39 H 1.07998 * 119.64385 * 180.25467 * 20 19 18 40 40 H 1.08003 * 119.70933 * 180.02562 * 21 20 19 41 41 H 1.07994 * 120.06383 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.3936 3.4284 -1.1763 7 1 4.0272 4.4199 -1.3976 8 6 5.2091 2.7663 -2.0922 9 7 5.6017 1.5380 -1.8527 10 14 5.7432 3.6285 -3.6610 11 1 7.0200 4.3477 -3.4205 12 1 5.9363 2.6235 -4.7370 13 1 4.6979 4.5997 -4.0724 14 6 4.1762 3.4974 1.1615 15 8 3.9614 2.9320 2.2169 16 6 4.5658 4.9202 1.1527 17 7 4.9070 5.5010 0.0237 18 6 5.2592 6.7937 -0.0084 19 6 5.6254 7.3937 -1.2275 20 6 5.9888 8.7068 -1.2572 21 6 6.0075 9.4647 -0.0920 22 6 5.6589 8.9015 1.1162 23 6 5.2849 7.5625 1.1746 24 7 4.9338 6.9906 2.3803 25 1 4.9451 7.5159 3.1957 26 6 4.5742 5.6887 2.4091 27 8 4.2593 5.1586 3.4585 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9336 0.9286 -0.8892 36 1 3.9329 0.9288 0.8908 37 1 6.1697 1.0773 -2.4901 38 1 5.6140 6.8151 -2.1394 39 1 6.2650 9.1635 -2.1961 40 1 6.2977 10.5041 -0.1341 41 1 5.6767 9.4979 2.0164 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151855013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:01 Heat of formation + Delta-G solvation = -23.951805 kcal Electronic energy + Delta-G solvation = -26523.549077 eV Core-core repulsion = 22789.361864 eV Total energy + Delta-G solvation = -3734.187213 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.57536 -40.44294 -39.67303 -37.25188 -37.08133 -36.22860 -35.49568 -33.42432 -31.65666 -30.80810 -29.85124 -27.20796 -26.46360 -25.21794 -24.15280 -23.66880 -22.08702 -21.57507 -20.33188 -19.73342 -19.01312 -18.42827 -17.44169 -17.00500 -16.58581 -16.34832 -16.23135 -15.98446 -15.95628 -15.56492 -15.54357 -14.87724 -14.58147 -14.53162 -14.39539 -13.76037 -13.65816 -13.31452 -13.01338 -12.89856 -12.80330 -12.79096 -12.64518 -12.16419 -12.10831 -11.99225 -11.97543 -11.89467 -11.76741 -11.41570 -10.95057 -10.86236 -10.07381 -9.66083 -9.35744 -9.09002 -8.22800 -6.01322 -1.04208 0.12868 0.82895 1.43111 1.46999 1.50809 1.61510 1.62777 2.31792 2.42323 2.65874 3.00361 3.04510 3.18595 3.34697 3.65741 3.94444 4.07835 4.13736 4.26414 4.29868 4.32940 4.35555 4.54693 4.73473 4.84675 4.87808 4.88265 4.96906 5.01532 5.08087 5.19162 5.22420 5.38042 5.43528 5.43841 5.51610 5.52636 5.53993 5.69843 5.82079 6.08362 6.53731 6.62221 6.75275 7.12693 7.49655 7.97134 8.75962 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012083 B = 0.005560 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.670479 B = 5034.423609 C = 6726.132222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.115 4.115 4 C 0.111 3.889 5 N -0.415 5.415 6 C -0.304 4.304 7 H 0.116 0.884 8 C -0.001 4.001 9 N -0.896 5.896 10 Si 0.983 3.017 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.247 1.247 14 C 0.494 3.506 15 O -0.619 6.619 16 C 0.028 3.972 17 N -0.334 5.334 18 C -0.021 4.021 19 C -0.045 4.045 20 C -0.136 4.136 21 C -0.035 4.035 22 C -0.158 4.158 23 C 0.140 3.860 24 N -0.604 5.604 25 H 0.432 0.568 26 C 0.509 3.491 27 O -0.534 6.534 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.032 0.968 34 H 0.058 0.942 35 H 0.110 0.890 36 H 0.028 0.972 37 H 0.274 0.726 38 H 0.136 0.864 39 H 0.171 0.829 40 H 0.183 0.817 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.203 16.548 -4.197 17.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.154 4.154 4 C -0.012 4.012 5 N -0.131 5.131 6 C -0.434 4.434 7 H 0.133 0.867 8 C -0.204 4.204 9 N -0.534 5.534 10 Si 0.806 3.194 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.170 1.170 14 C 0.284 3.716 15 O -0.506 6.506 16 C -0.145 4.145 17 N -0.050 5.050 18 C -0.136 4.136 19 C -0.064 4.064 20 C -0.155 4.155 21 C -0.054 4.054 22 C -0.179 4.179 23 C 0.035 3.965 24 N -0.247 5.247 25 H 0.274 0.726 26 C 0.298 3.702 27 O -0.409 6.409 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.128 0.872 36 H 0.046 0.954 37 H 0.084 0.916 38 H 0.153 0.847 39 H 0.188 0.812 40 H 0.200 0.800 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.035 15.360 -4.032 15.881 hybrid contribution 0.432 0.182 0.819 0.943 sum 0.466 15.542 -3.214 15.878 Atomic orbital electron populations 1.21710 0.94116 1.02415 1.01709 1.21392 0.97100 0.94790 1.01895 1.21798 0.95257 0.98177 1.00178 1.21683 0.93178 0.83910 1.02403 1.43592 1.52379 1.12019 1.05151 1.20263 1.27306 1.02422 0.93391 0.86736 1.26536 0.94972 0.95891 1.02973 1.69737 1.33632 1.12118 1.37918 0.85076 0.79514 0.78556 0.76284 1.19441 1.20885 1.16973 1.18075 0.83273 0.85816 0.84421 1.90670 1.58387 1.69613 1.31900 1.23830 1.06337 0.96073 0.88243 1.68931 1.00798 1.08721 1.26598 1.19355 1.09596 0.90005 0.94629 1.21138 0.94167 0.96183 0.94923 1.21295 1.00680 0.92331 1.01189 1.21814 0.91786 1.01731 0.90066 1.21223 1.04282 0.90425 1.01971 1.19422 0.96799 0.95611 0.84625 1.43483 1.59865 1.10496 1.10831 0.72569 1.19189 0.78607 0.82330 0.90027 1.90892 1.48110 1.69225 1.32691 0.90883 0.93334 0.92366 0.91440 0.92654 0.94949 0.92302 0.87221 0.95387 0.91635 0.84663 0.81204 0.79966 0.81274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 9.91 71.98 0.71 -3.32 16 2 C -0.11 -4.01 5.93 30.59 0.18 -3.83 16 3 C -0.12 -5.10 5.50 30.60 0.17 -4.93 16 4 C 0.11 5.78 4.88 86.38 0.42 6.20 16 5 N -0.42 -23.01 2.50 -639.21 -1.60 -24.61 16 6 C -0.30 -15.87 7.48 84.25 0.63 -15.24 16 7 H 0.12 5.80 5.98 -2.91 -0.02 5.78 16 8 C 0.00 -0.06 5.35 85.06 0.45 0.40 16 9 N -0.90 -48.03 10.97 21.73 0.24 -47.79 16 10 Si 0.98 38.62 29.56 68.60 2.03 40.65 16 11 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 12 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 13 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 14 C 0.49 28.57 7.57 86.69 0.66 29.23 16 15 O -0.62 -39.38 15.10 15.71 0.24 -39.14 16 16 C 0.03 1.39 6.86 44.02 0.30 1.69 16 17 N -0.33 -14.73 6.37 -173.13 -1.10 -15.83 16 18 C -0.02 -0.71 6.58 40.12 0.26 -0.45 16 19 C -0.04 -1.15 9.96 22.42 0.22 -0.93 16 20 C -0.14 -2.09 9.96 22.00 0.22 -1.87 16 21 C -0.04 -0.40 10.03 22.35 0.22 -0.18 16 22 C -0.16 -2.53 9.90 22.38 0.22 -2.31 16 23 C 0.14 3.87 6.63 39.10 0.26 4.13 16 24 N -0.60 -18.88 5.40 -305.55 -1.65 -20.53 16 25 H 0.43 10.01 8.83 -92.71 -0.82 9.19 16 26 C 0.51 22.95 7.92 86.57 0.69 23.64 16 27 O -0.53 -28.01 16.32 15.47 0.25 -27.76 16 28 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.11 5.88 5.50 -2.39 -0.01 5.87 16 36 H 0.03 1.55 7.53 -2.39 -0.02 1.54 16 37 H 0.27 13.74 8.30 -92.71 -0.77 12.97 16 38 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 39 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 40 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 41 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -80.06 347.36 4.28 -75.78 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.25 Total: 26.99 kcal Atomic # 6 Polarization: 26.62 SS G_CDS: 5.63 Total: 32.25 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -4.11 Total: -108.76 kcal Atomic # 8 Polarization: -67.40 SS G_CDS: 0.49 Total: -66.91 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -80.06 4.28 -75.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151855013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.825 kcal (2) G-P(sol) polarization free energy of solvation -80.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds