Wall clock time and date at job start Tue Mar 31 2020 11:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.46958 * 2 1 4 4 C 1.52998 * 109.46893 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47399 * 180.02562 * 4 3 2 6 6 C 1.36804 * 119.99586 * 265.68206 * 5 4 3 7 7 H 1.07995 * 120.00362 * 137.08318 * 6 5 4 8 8 C 1.39101 * 120.00076 * 317.07795 * 6 5 4 9 9 N 1.31333 * 119.99748 * 343.59417 * 8 6 5 10 10 Si 1.86798 * 120.00370 * 163.59186 * 8 6 5 11 11 H 1.48500 * 109.46575 * 0.02562 * 10 8 6 12 12 H 1.48491 * 109.47500 * 120.00106 * 10 8 6 13 13 H 1.48506 * 109.46800 * 240.00370 * 10 8 6 14 14 C 1.34768 * 120.00522 * 85.67475 * 5 4 3 15 15 O 1.21589 * 120.00299 * 4.81905 * 14 5 4 16 16 C 1.47837 * 120.00470 * 184.81622 * 14 5 4 17 17 C 1.40493 * 119.72853 * 141.76370 * 16 14 5 18 18 C 1.36028 * 120.77737 * 180.02562 * 17 16 14 19 19 C 1.40127 * 119.87149 * 0.02562 * 18 17 16 20 20 C 1.41547 * 121.87887 * 179.97438 * 19 18 17 21 21 O 1.35276 * 120.87243 * 0.03254 * 20 19 18 22 22 N 1.32339 * 118.25630 * 180.29773 * 20 19 18 23 23 C 1.32436 * 121.53772 * 359.44806 * 22 20 19 24 24 N 1.31118 * 122.92070 * 0.57564 * 23 22 20 25 25 C 1.34144 * 120.44463 * 359.72037 * 24 23 22 26 26 C 1.38659 * 119.72388 * 321.79091 * 16 14 5 27 27 H 1.09002 * 109.46689 * 299.99644 * 1 2 3 28 28 H 1.08998 * 109.47066 * 59.99607 * 1 2 3 29 29 H 1.09001 * 109.46695 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46689 * 240.00356 * 2 1 3 31 31 H 1.08998 * 109.47066 * 120.00393 * 2 1 3 32 32 H 1.08994 * 109.47407 * 60.00428 * 3 2 1 33 33 H 1.08998 * 109.47553 * 300.00095 * 3 2 1 34 34 H 1.08994 * 109.47914 * 59.99828 * 4 3 2 35 35 H 1.09004 * 109.47300 * 299.99840 * 4 3 2 36 36 H 0.96997 * 120.00043 * 179.97438 * 9 8 6 37 37 H 1.08005 * 119.61001 * 0.04831 * 17 16 14 38 38 H 1.08000 * 120.06871 * 179.97438 * 18 17 16 39 39 H 0.96703 * 114.00286 * 89.99056 * 21 20 19 40 40 H 1.07999 * 118.53747 * 180.27229 * 23 22 20 41 41 H 1.08001 * 120.31719 * 359.97438 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.3701 3.4394 -1.1812 7 1 4.0680 4.4619 -1.3534 8 6 5.0762 2.7486 -2.1606 9 7 5.7189 1.6457 -1.8519 10 14 5.1102 3.3896 -3.9148 11 1 4.3138 4.6400 -4.0004 12 1 6.5133 3.6688 -4.3128 13 1 4.5309 2.3697 -4.8257 14 6 4.2006 3.4877 1.1640 15 8 4.0079 2.9141 2.2187 16 6 4.5910 4.9136 1.1589 17 6 4.0177 5.7962 2.0895 18 6 4.3610 7.1124 2.1034 19 6 5.2964 7.5995 1.1808 20 6 5.6840 8.9607 1.1570 21 8 5.1594 9.8472 2.0339 22 7 6.5690 9.3444 0.2510 23 6 7.0951 8.4867 -0.6101 24 7 6.7748 7.2155 -0.6356 25 6 5.8827 6.7217 0.2360 26 6 5.5195 5.3688 0.2352 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9331 0.9288 -0.8907 35 1 3.9338 0.9285 0.8891 36 1 6.2110 1.1638 -2.5348 37 1 3.2962 5.4253 2.8025 38 1 3.9128 7.7809 2.8236 39 1 5.6597 9.9289 2.8574 40 1 7.8165 8.8515 -1.3262 41 1 5.9579 4.6870 -0.4786 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153755833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:18 Heat of formation + Delta-G solvation = -10.959247 kcal Electronic energy + Delta-G solvation = -26078.098843 eV Core-core repulsion = 22344.475029 eV Total energy + Delta-G solvation = -3733.623814 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.22196 -39.12980 -37.75781 -36.89221 -35.40010 -34.14363 -33.02054 -31.72411 -31.14661 -29.93273 -28.37826 -25.43032 -24.79942 -24.33521 -22.73001 -22.04287 -20.63659 -19.83459 -19.09035 -18.40771 -17.70577 -16.73637 -16.37738 -15.74698 -15.27664 -14.82818 -14.69107 -14.60862 -14.09251 -14.01287 -13.77017 -13.53503 -13.39466 -12.91766 -12.45876 -12.36448 -12.29217 -12.14876 -11.73112 -11.62180 -11.46654 -11.20665 -11.11402 -10.66814 -10.64341 -10.57981 -10.43266 -10.39914 -10.29661 -9.82853 -9.25655 -9.19885 -8.90842 -8.64091 -8.03088 -7.60566 -6.53326 -4.27433 0.32083 0.80411 2.01570 2.92705 3.08103 3.17409 3.21042 3.31054 3.85948 3.98847 4.27287 4.28854 4.43815 4.57267 4.77099 4.86581 5.02094 5.33166 5.41981 5.42695 5.55960 5.59353 5.69190 5.77450 5.98210 6.07027 6.18695 6.27196 6.28774 6.31948 6.40046 6.46161 6.49976 6.61637 6.73699 6.81219 6.95836 7.01589 7.16853 7.23371 7.29293 7.33069 7.79414 8.19266 8.23561 8.88028 9.27021 9.71820 10.47962 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013535 B = 0.004662 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.278011 B = 6004.469681 C = 7498.868668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.129 4.129 4 C 0.119 3.881 5 N -0.419 5.419 6 C -0.352 4.352 7 H 0.092 0.908 8 C 0.053 3.947 9 N -0.851 5.851 10 Si 0.911 3.089 11 H -0.266 1.266 12 H -0.276 1.276 13 H -0.278 1.278 14 C 0.503 3.497 15 O -0.595 6.595 16 C -0.056 4.056 17 C -0.073 4.073 18 C -0.099 4.099 19 C -0.166 4.166 20 C 0.395 3.605 21 O -0.473 6.473 22 N -0.552 5.552 23 C 0.303 3.697 24 N -0.495 5.495 25 C 0.154 3.846 26 C -0.045 4.045 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.273 0.727 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.407 0.593 40 H 0.197 0.803 41 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.960 7.122 3.447 8.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.168 4.168 4 C -0.005 4.005 5 N -0.135 5.135 6 C -0.480 4.480 7 H 0.109 0.891 8 C -0.156 4.156 9 N -0.485 5.485 10 Si 0.736 3.264 11 H -0.190 1.190 12 H -0.201 1.201 13 H -0.203 1.203 14 C 0.292 3.708 15 O -0.482 6.482 16 C -0.062 4.062 17 C -0.092 4.092 18 C -0.119 4.119 19 C -0.172 4.172 20 C 0.194 3.806 21 O -0.280 6.280 22 N -0.278 5.278 23 C 0.013 3.987 24 N -0.209 5.209 25 C 0.028 3.972 26 C -0.064 4.064 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.267 0.733 40 H 0.213 0.787 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.699 6.926 2.713 7.630 hybrid contribution -0.224 0.142 -0.079 0.277 sum -1.923 7.067 2.634 7.784 Atomic orbital electron populations 1.21759 0.96563 1.00756 1.01506 1.21426 0.95050 0.97554 1.01704 1.21923 0.97598 0.95759 1.01496 1.21398 0.91157 0.84466 1.03429 1.43275 1.53845 1.11846 1.04541 1.19478 1.35904 0.99902 0.92686 0.89076 1.25424 0.93761 0.96096 1.00300 1.69882 1.27314 1.16907 1.34422 0.86110 0.78710 0.79315 0.82244 1.18967 1.20101 1.20322 1.18251 0.81758 0.86218 0.84583 1.90645 1.57031 1.69188 1.31290 1.20272 0.96057 0.95336 0.94534 1.21038 0.98538 0.92321 0.97286 1.20597 0.97120 0.95740 0.98456 1.19654 1.02602 0.93873 1.01044 1.19600 0.87357 0.84993 0.88682 1.84610 1.51744 1.61442 1.30219 1.67796 1.11945 1.40719 1.07348 1.24588 0.95641 0.84605 0.93845 1.68750 1.14172 1.15520 1.22483 1.18993 0.92781 0.94734 0.90656 1.22109 0.94833 0.92423 0.97021 0.93059 0.93020 0.93359 0.92188 0.92305 0.92821 0.92163 0.88194 0.92435 0.91638 0.84724 0.84661 0.73299 0.78677 0.80447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.12 -1.89 5.93 -26.73 -0.16 -2.05 16 3 C -0.13 -2.47 5.51 -26.73 -0.15 -2.62 16 4 C 0.12 2.67 4.93 -4.04 -0.02 2.65 16 5 N -0.42 -10.02 2.48 -115.90 -0.29 -10.30 16 6 C -0.35 -8.40 6.14 -15.01 -0.09 -8.50 16 7 H 0.09 2.17 6.56 -52.49 -0.34 1.83 16 8 C 0.05 1.25 4.96 -17.44 -0.09 1.16 16 9 N -0.85 -21.23 11.61 55.50 0.64 -20.58 16 10 Si 0.91 18.98 29.58 -169.99 -5.03 13.95 16 11 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 12 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 13 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 14 C 0.50 11.92 7.29 -12.34 -0.09 11.83 16 15 O -0.60 -15.19 16.49 5.29 0.09 -15.11 16 16 C -0.06 -1.14 5.40 -104.97 -0.57 -1.71 16 17 C -0.07 -1.25 9.52 -39.53 -0.38 -1.63 16 18 C -0.10 -1.45 9.58 -39.67 -0.38 -1.83 16 19 C -0.17 -2.68 5.76 -106.62 -0.61 -3.29 16 20 C 0.39 5.72 7.89 -16.07 -0.13 5.59 16 21 O -0.47 -5.27 12.91 -17.52 -0.23 -5.50 16 22 N -0.55 -8.31 10.42 -14.23 -0.15 -8.46 16 23 C 0.30 4.50 12.22 -92.18 -1.13 3.38 16 24 N -0.49 -8.84 10.44 -12.65 -0.13 -8.97 16 25 C 0.15 2.87 6.61 -84.86 -0.56 2.31 16 26 C -0.04 -0.91 7.79 -38.74 -0.30 -1.22 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.10 2.37 5.81 -51.93 -0.30 2.07 16 35 H 0.06 1.35 7.49 -51.93 -0.39 0.96 16 36 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 37 H 0.13 2.15 8.02 -52.48 -0.42 1.73 16 38 H 0.14 1.53 7.70 -52.49 -0.40 1.13 16 39 H 0.41 2.31 9.06 45.56 0.41 2.72 16 40 H 0.20 2.14 8.06 -52.49 -0.42 1.72 16 41 H 0.18 4.02 5.89 -52.49 -0.31 3.71 16 LS Contribution 348.61 15.07 5.25 5.25 Total: -1.00 -29.76 348.61 -8.39 -38.15 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -4.27 Total: 9.12 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -4.28 Total: 2.45 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.08 Total: -48.31 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.14 Total: -20.61 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.76 -8.39 -38.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153755833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.188 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds