Wall clock time and date at job start Tue Mar 31 2020 11:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.46958 * 2 1 4 4 C 1.52998 * 109.46893 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47399 * 180.02562 * 4 3 2 6 6 C 1.36804 * 119.99586 * 265.68206 * 5 4 3 7 7 H 1.07995 * 120.00362 * 137.08318 * 6 5 4 8 8 C 1.39101 * 120.00076 * 317.07795 * 6 5 4 9 9 N 1.31333 * 119.99748 * 343.59417 * 8 6 5 10 10 Si 1.86798 * 120.00370 * 163.59186 * 8 6 5 11 11 H 1.48500 * 109.46575 * 0.02562 * 10 8 6 12 12 H 1.48491 * 109.47500 * 120.00106 * 10 8 6 13 13 H 1.48506 * 109.46800 * 240.00370 * 10 8 6 14 14 C 1.34768 * 120.00522 * 85.67475 * 5 4 3 15 15 O 1.21589 * 120.00299 * 4.81905 * 14 5 4 16 16 C 1.47837 * 120.00470 * 184.81622 * 14 5 4 17 17 C 1.40493 * 119.72853 * 141.76370 * 16 14 5 18 18 C 1.36028 * 120.77737 * 180.02562 * 17 16 14 19 19 C 1.40127 * 119.87149 * 0.02562 * 18 17 16 20 20 C 1.41547 * 121.87887 * 179.97438 * 19 18 17 21 21 O 1.35276 * 120.87243 * 0.03254 * 20 19 18 22 22 N 1.32339 * 118.25630 * 180.29773 * 20 19 18 23 23 C 1.32436 * 121.53772 * 359.44806 * 22 20 19 24 24 N 1.31118 * 122.92070 * 0.57564 * 23 22 20 25 25 C 1.34144 * 120.44463 * 359.72037 * 24 23 22 26 26 C 1.38659 * 119.72388 * 321.79091 * 16 14 5 27 27 H 1.09002 * 109.46689 * 299.99644 * 1 2 3 28 28 H 1.08998 * 109.47066 * 59.99607 * 1 2 3 29 29 H 1.09001 * 109.46695 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46689 * 240.00356 * 2 1 3 31 31 H 1.08998 * 109.47066 * 120.00393 * 2 1 3 32 32 H 1.08994 * 109.47407 * 60.00428 * 3 2 1 33 33 H 1.08998 * 109.47553 * 300.00095 * 3 2 1 34 34 H 1.08994 * 109.47914 * 59.99828 * 4 3 2 35 35 H 1.09004 * 109.47300 * 299.99840 * 4 3 2 36 36 H 0.96997 * 120.00043 * 179.97438 * 9 8 6 37 37 H 1.08005 * 119.61001 * 0.04831 * 17 16 14 38 38 H 1.08000 * 120.06871 * 179.97438 * 18 17 16 39 39 H 0.96703 * 114.00286 * 89.99056 * 21 20 19 40 40 H 1.07999 * 118.53747 * 180.27229 * 23 22 20 41 41 H 1.08001 * 120.31719 * 359.97438 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.3701 3.4394 -1.1812 7 1 4.0680 4.4619 -1.3534 8 6 5.0762 2.7486 -2.1606 9 7 5.7189 1.6457 -1.8519 10 14 5.1102 3.3896 -3.9148 11 1 4.3138 4.6400 -4.0004 12 1 6.5133 3.6688 -4.3128 13 1 4.5309 2.3697 -4.8257 14 6 4.2006 3.4877 1.1640 15 8 4.0079 2.9141 2.2187 16 6 4.5910 4.9136 1.1589 17 6 4.0177 5.7962 2.0895 18 6 4.3610 7.1124 2.1034 19 6 5.2964 7.5995 1.1808 20 6 5.6840 8.9607 1.1570 21 8 5.1594 9.8472 2.0339 22 7 6.5690 9.3444 0.2510 23 6 7.0951 8.4867 -0.6101 24 7 6.7748 7.2155 -0.6356 25 6 5.8827 6.7217 0.2360 26 6 5.5195 5.3688 0.2352 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9331 0.9288 -0.8907 35 1 3.9338 0.9285 0.8891 36 1 6.2110 1.1638 -2.5348 37 1 3.2962 5.4253 2.8025 38 1 3.9128 7.7809 2.8236 39 1 5.6597 9.9289 2.8574 40 1 7.8165 8.8515 -1.3262 41 1 5.9579 4.6870 -0.4786 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153755833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:16 Heat of formation + Delta-G solvation = -30.886854 kcal Electronic energy + Delta-G solvation = -26078.962969 eV Core-core repulsion = 22344.475029 eV Total energy + Delta-G solvation = -3734.487939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.47863 -40.83515 -38.83422 -38.26544 -37.17321 -35.67107 -34.23545 -33.55367 -32.55277 -31.22816 -29.87735 -27.17732 -26.27245 -25.60416 -24.19259 -23.34879 -22.05720 -21.50024 -20.40946 -19.83880 -18.94387 -18.33771 -17.76894 -17.26299 -16.74212 -16.40322 -16.27845 -16.06712 -15.63078 -15.37051 -15.12788 -14.89541 -14.79491 -14.34962 -13.95926 -13.79523 -13.63081 -13.51350 -13.17323 -13.09437 -13.03337 -12.87909 -12.69937 -12.15454 -12.09242 -11.99033 -11.88266 -11.80192 -11.60555 -11.43889 -11.08947 -10.66153 -10.32740 -10.23425 -9.51889 -9.33718 -8.38452 -6.17274 -0.93081 -0.50856 0.70281 1.35124 1.43118 1.53921 1.59585 2.17663 2.24349 2.30065 2.75845 2.89101 3.00179 3.18553 3.25573 3.53967 3.82696 3.99092 4.08474 4.17261 4.21155 4.28762 4.33364 4.47298 4.53228 4.73252 4.82696 4.84974 4.90553 4.98807 5.02333 5.08790 5.16780 5.21942 5.33909 5.39112 5.40757 5.45755 5.52367 5.56194 5.91317 5.95918 6.32417 6.49863 7.00794 7.03124 7.41299 7.86280 8.64537 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013535 B = 0.004662 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.278011 B = 6004.469681 C = 7498.868668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.116 4.116 4 C 0.120 3.880 5 N -0.431 5.431 6 C -0.353 4.353 7 H 0.088 0.912 8 C 0.018 3.982 9 N -0.883 5.883 10 Si 0.969 3.031 11 H -0.265 1.265 12 H -0.277 1.277 13 H -0.271 1.271 14 C 0.492 3.508 15 O -0.624 6.624 16 C -0.071 4.071 17 C -0.090 4.090 18 C -0.063 4.063 19 C -0.177 4.177 20 C 0.419 3.581 21 O -0.465 6.465 22 N -0.559 5.559 23 C 0.315 3.685 24 N -0.533 5.533 25 C 0.143 3.857 26 C -0.063 4.063 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.037 0.963 36 H 0.276 0.724 37 H 0.144 0.856 38 H 0.182 0.818 39 H 0.435 0.565 40 H 0.232 0.768 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.748 9.857 3.670 10.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.155 4.155 4 C -0.003 4.003 5 N -0.146 5.146 6 C -0.480 4.480 7 H 0.106 0.894 8 C -0.187 4.187 9 N -0.519 5.519 10 Si 0.793 3.207 11 H -0.189 1.189 12 H -0.202 1.202 13 H -0.196 1.196 14 C 0.282 3.718 15 O -0.512 6.512 16 C -0.077 4.077 17 C -0.109 4.109 18 C -0.083 4.083 19 C -0.183 4.183 20 C 0.217 3.783 21 O -0.277 6.277 22 N -0.285 5.285 23 C 0.027 3.973 24 N -0.248 5.248 25 C 0.018 3.982 26 C -0.083 4.083 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.162 0.838 38 H 0.199 0.801 39 H 0.301 0.699 40 H 0.248 0.752 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.488 9.668 2.959 10.412 hybrid contribution 0.107 -0.512 -0.045 0.525 sum -2.382 9.156 2.915 9.900 Atomic orbital electron populations 1.21714 0.94123 1.02368 1.01814 1.21410 0.97131 0.94975 1.01853 1.21793 0.94936 0.98070 1.00655 1.21374 0.93416 0.83908 1.01583 1.43513 1.54007 1.12259 1.04860 1.19523 1.35937 0.99845 0.92712 0.89436 1.26071 0.93219 0.96178 1.03222 1.69965 1.28346 1.18115 1.35481 0.85231 0.78390 0.78790 0.78306 1.18913 1.20240 1.19561 1.18834 0.81110 0.87766 0.84076 1.90593 1.58311 1.70301 1.32025 1.20154 0.97255 0.94031 0.96293 1.21107 0.99499 0.93040 0.97223 1.21002 0.94809 0.94956 0.97484 1.19839 1.02946 0.94654 1.00871 1.19612 0.85709 0.84496 0.88484 1.84572 1.52003 1.59937 1.31193 1.67991 1.12346 1.40414 1.07711 1.25344 0.94897 0.83620 0.93462 1.68767 1.15374 1.17105 1.23589 1.18934 0.93375 0.94172 0.91696 1.21683 0.96017 0.93379 0.97203 0.92870 0.92618 0.91099 0.91952 0.92293 0.93875 0.92527 0.89559 0.94487 0.91442 0.83803 0.80108 0.69948 0.75165 0.83747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.91 71.99 0.71 -2.91 16 2 C -0.12 -3.67 5.93 30.60 0.18 -3.49 16 3 C -0.12 -4.60 5.51 30.59 0.17 -4.43 16 4 C 0.12 5.73 4.93 86.38 0.43 6.15 16 5 N -0.43 -21.76 2.48 -638.85 -1.59 -23.35 16 6 C -0.35 -17.65 6.14 84.13 0.52 -17.13 16 7 H 0.09 4.38 6.56 -2.91 -0.02 4.37 16 8 C 0.02 0.90 4.96 84.97 0.42 1.32 16 9 N -0.88 -46.03 11.61 21.69 0.25 -45.78 16 10 Si 0.97 39.86 29.58 68.60 2.03 41.89 16 11 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 12 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 13 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 14 C 0.49 24.58 7.29 86.79 0.63 25.21 16 15 O -0.62 -33.45 16.49 -4.00 -0.07 -33.51 16 16 C -0.07 -3.04 5.40 -20.09 -0.11 -3.15 16 17 C -0.09 -3.02 9.52 22.31 0.21 -2.81 16 18 C -0.06 -1.66 9.58 22.21 0.21 -1.44 16 19 C -0.18 -5.30 5.76 -21.16 -0.12 -5.42 16 20 C 0.42 10.53 7.89 85.43 0.67 11.20 16 21 O -0.47 -7.97 12.91 -85.61 -1.11 -9.07 16 22 N -0.56 -14.90 10.42 -311.99 -3.25 -18.15 16 23 C 0.32 8.64 12.22 180.89 2.21 10.85 16 24 N -0.53 -18.70 10.44 -193.94 -2.03 -20.73 16 25 C 0.14 5.29 6.61 40.08 0.26 5.56 16 26 C -0.06 -2.70 7.79 22.82 0.18 -2.52 16 27 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.09 4.33 5.81 -2.39 -0.01 4.31 16 35 H 0.04 1.86 7.49 -2.39 -0.02 1.84 16 36 H 0.28 13.48 8.31 -92.71 -0.77 12.71 16 37 H 0.14 4.49 8.02 -2.91 -0.02 4.47 16 38 H 0.18 3.11 7.70 -2.91 -0.02 3.09 16 39 H 0.44 2.45 9.06 -74.06 -0.67 1.78 16 40 H 0.23 4.33 8.06 -2.91 -0.02 4.31 16 41 H 0.14 7.04 5.89 -2.91 -0.02 7.03 16 Total: -1.00 -67.92 348.61 1.24 -66.68 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.41 Total: 25.02 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 6.58 Total: 17.00 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -6.61 Total: -108.01 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -1.17 Total: -42.58 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -67.92 1.24 -66.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153755833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.795 kcal (2) G-P(sol) polarization free energy of solvation -67.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds