Wall clock time and date at job start Tue Mar 31 2020 11:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47107 * 2 1 4 4 H 1.09001 * 109.47046 * 305.54942 * 3 2 1 5 5 C 1.50694 * 109.47330 * 185.54445 * 3 2 1 6 6 H 1.08001 * 119.99790 * 240.00200 * 5 3 2 7 7 C 1.37876 * 120.00277 * 60.00069 * 5 3 2 8 8 N 1.31519 * 119.99465 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00275 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47170 * 89.99878 * 9 7 5 11 11 H 1.48499 * 109.47065 * 209.99845 * 9 7 5 12 12 H 1.48495 * 109.47144 * 330.00115 * 9 7 5 13 13 N 1.46500 * 109.47030 * 65.54475 * 3 2 1 14 14 C 1.38682 * 119.99943 * 206.54078 * 13 3 2 15 15 C 1.40251 * 119.23261 * 354.85121 * 14 13 3 16 16 C 1.36207 * 119.87732 * 179.69650 * 15 14 13 17 17 C 1.50702 * 120.85121 * 180.26680 * 16 15 14 18 18 C 1.41011 * 118.29466 * 0.57967 * 16 15 14 19 19 C 1.40339 * 121.26083 * 179.66338 * 18 16 15 20 20 C 1.36206 * 119.63986 * 180.02562 * 19 18 16 21 21 N 1.48028 * 119.57326 * 180.02562 * 20 19 18 22 22 O 1.21796 * 119.99671 * 179.97438 * 21 20 19 23 23 O 1.21794 * 120.00009 * 359.97438 * 21 20 19 24 24 C 1.39287 * 120.84931 * 0.02562 * 20 19 18 25 25 C 1.36127 * 121.03158 * 0.02562 * 24 20 19 26 26 C 1.40537 * 119.76243 * 359.97438 * 25 24 20 27 27 N 1.31715 * 119.22456 * 175.12245 * 14 13 3 28 28 H 1.08995 * 109.47544 * 64.76248 * 1 2 3 29 29 H 1.09008 * 109.46785 * 184.76016 * 1 2 3 30 30 H 1.08992 * 109.47353 * 304.75546 * 1 2 3 31 31 H 1.09007 * 109.46677 * 240.00408 * 2 1 3 32 32 H 1.08999 * 109.47084 * 120.00177 * 2 1 3 33 33 H 0.97003 * 119.99193 * 180.02562 * 8 7 5 34 34 H 0.97000 * 119.99959 * 26.53508 * 13 3 2 35 35 H 1.08005 * 120.05562 * 359.97438 * 15 14 13 36 36 H 1.09005 * 109.46981 * 270.32356 * 17 16 15 37 37 H 1.08999 * 109.47711 * 30.32286 * 17 16 15 38 38 H 1.09001 * 109.46975 * 150.32866 * 17 16 15 39 39 H 1.07995 * 120.17875 * 0.02973 * 19 18 16 40 40 H 1.08001 * 119.48178 * 179.97438 * 24 20 19 41 41 H 1.08000 * 120.12067 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4447 -0.1373 6 1 4.1529 1.8869 0.6349 7 6 4.1322 0.8824 -1.2485 8 7 3.3866 0.3445 -2.1889 9 14 5.9925 0.8846 -1.4183 10 1 6.5469 -0.3494 -0.8058 11 1 6.3581 0.9305 -2.8569 12 1 6.5512 2.0743 -0.7273 13 7 1.6637 2.0935 1.2573 14 6 1.5024 3.4701 1.3042 15 6 1.8087 4.2346 0.1690 16 6 1.6493 5.5870 0.1986 17 6 1.9659 6.4291 -1.0104 18 6 1.1867 6.1796 1.3916 19 6 1.0069 7.5677 1.4932 20 6 0.5589 8.1052 2.6618 21 7 0.3691 9.5695 2.7671 22 8 -0.0316 10.0582 3.8082 23 8 0.6137 10.2854 1.8126 24 6 0.2770 7.2947 3.7589 25 6 0.4413 5.9449 3.6950 26 6 0.9018 5.3538 2.5060 27 7 1.0704 4.0294 2.4157 28 1 -0.3634 0.4381 -0.9295 29 1 -0.3633 -1.0242 0.0853 30 1 -0.3633 0.5858 0.8442 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 3.8028 -0.0515 -2.9706 34 1 1.5272 1.5616 2.0569 35 1 2.1660 3.7514 -0.7284 36 1 3.0119 6.7343 -0.9768 37 1 1.7859 5.8484 -1.9151 38 1 1.3293 7.3139 -1.0138 39 1 1.2224 8.2063 0.6493 40 1 -0.0768 7.7443 4.6750 41 1 0.2187 5.3305 4.5548 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:58 Heat of formation + Delta-G solvation = 29.034247 kcal Electronic energy + Delta-G solvation = -25618.954734 eV Core-core repulsion = 21887.065168 eV Total energy + Delta-G solvation = -3731.889566 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.22158 -41.99254 -39.25724 -37.61994 -37.35658 -35.84100 -34.49511 -33.17677 -31.77769 -30.96473 -28.94220 -28.82272 -26.99709 -25.07927 -24.89757 -23.57510 -22.25796 -21.87932 -20.66738 -19.73968 -19.00038 -18.55187 -18.49329 -18.21076 -17.41626 -16.78231 -16.27309 -15.90134 -15.63694 -15.42254 -14.95191 -14.74657 -14.39498 -14.11020 -14.02855 -13.85967 -13.65664 -13.32782 -13.21002 -12.97593 -12.91736 -12.72547 -12.62991 -12.61091 -12.23652 -12.22412 -12.11546 -11.82166 -11.68973 -11.56126 -11.31477 -10.68445 -10.57996 -10.50296 -9.61416 -8.75236 -8.13952 -6.33702 -1.26926 -0.54821 0.12029 0.44842 0.84643 1.38793 1.43799 1.50222 1.72561 2.21682 2.43001 2.93995 3.09251 3.28335 3.38385 3.54331 3.62579 3.69415 3.94634 4.11793 4.34300 4.40106 4.47418 4.51900 4.61373 4.62949 4.68324 4.70453 4.83481 4.94965 4.97052 5.02765 5.12566 5.20284 5.24146 5.28171 5.35988 5.48169 5.57664 5.66672 5.79365 6.09864 6.17171 6.59695 6.66462 6.74769 7.11897 7.38793 8.83029 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018729 B = 0.003364 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.686906 B = 8321.985017 C = 9082.820687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.124 4.124 3 C 0.280 3.720 4 H 0.029 0.971 5 C -0.543 4.543 6 H 0.047 0.953 7 C 0.033 3.967 8 N -0.904 5.904 9 Si 0.947 3.053 10 H -0.279 1.279 11 H -0.281 1.281 12 H -0.277 1.277 13 N -0.678 5.678 14 C 0.453 3.547 15 C -0.220 4.220 16 C 0.023 3.977 17 C -0.124 4.124 18 C -0.182 4.182 19 C 0.027 3.973 20 C -0.095 4.095 21 N 0.041 4.959 22 O -0.181 6.181 23 O -0.192 6.192 24 C -0.043 4.043 25 C -0.108 4.108 26 C 0.214 3.786 27 N -0.592 5.592 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.267 0.733 34 H 0.401 0.599 35 H 0.140 0.860 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.172 0.828 40 H 0.171 0.829 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.273 8.637 4.924 11.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.163 4.163 3 C 0.178 3.822 4 H 0.047 0.953 5 C -0.582 4.582 6 H 0.065 0.935 7 C -0.168 4.168 8 N -0.542 5.542 9 Si 0.774 3.226 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.202 1.202 13 N -0.301 5.301 14 C 0.203 3.797 15 C -0.244 4.244 16 C 0.016 3.984 17 C -0.180 4.180 18 C -0.188 4.188 19 C 0.007 3.993 20 C -0.180 4.180 21 N 0.553 4.447 22 O -0.394 6.394 23 O -0.402 6.402 24 C -0.064 4.064 25 C -0.128 4.128 26 C 0.086 3.914 27 N -0.315 5.315 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.236 0.764 35 H 0.158 0.842 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.189 0.811 40 H 0.189 0.811 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.287 7.207 5.152 10.316 hybrid contribution 1.239 0.188 -0.607 1.393 sum -4.047 7.395 4.545 9.577 Atomic orbital electron populations 1.21719 0.96209 1.01096 1.00562 1.21737 0.94416 0.97723 1.02429 1.18738 0.93254 0.90196 0.80057 0.95339 1.21639 0.92423 1.38716 1.05416 0.93491 1.25427 1.01530 0.94548 0.95300 1.69924 1.36264 1.38318 1.09677 0.85726 0.81364 0.78291 0.77264 1.20438 1.20661 1.20164 1.45379 1.68179 1.02344 1.14233 1.18928 0.85260 0.86550 0.88928 1.21522 1.07912 0.94406 1.00517 1.20235 0.90098 0.93326 0.94766 1.21064 1.03935 0.99570 0.93468 1.18374 1.10955 0.93159 0.96270 1.20980 0.87975 0.94088 0.96257 1.20678 1.18719 0.78638 0.99977 1.43765 0.97069 1.04153 0.99700 1.94490 1.48129 1.78090 1.18700 1.94500 1.55366 1.59997 1.30298 1.20628 0.95592 0.92500 0.97698 1.20737 1.01466 0.93337 0.97294 1.19114 0.90665 0.88260 0.93352 1.67728 1.26770 1.11297 1.25753 0.94065 0.92343 0.93411 0.89703 0.93838 0.92381 0.76400 0.84209 0.88549 0.89666 0.88601 0.81070 0.81112 0.81463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 9.86 71.98 0.71 -3.87 16 2 C -0.12 -4.95 5.32 30.59 0.16 -4.79 16 3 C 0.28 11.81 1.62 44.24 0.07 11.88 16 4 H 0.03 1.32 6.56 -2.39 -0.02 1.30 16 5 C -0.54 -25.86 8.45 25.60 0.22 -25.65 16 6 H 0.05 2.34 7.81 -2.91 -0.02 2.31 16 7 C 0.03 1.61 5.29 84.65 0.45 2.05 16 8 N -0.90 -44.91 11.29 21.45 0.24 -44.67 16 9 Si 0.95 39.43 29.54 68.60 2.03 41.46 16 10 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 12 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 13 N -0.68 -25.19 4.60 -327.93 -1.51 -26.70 16 14 C 0.45 16.40 7.61 133.65 1.02 17.42 16 15 C -0.22 -7.59 8.68 22.29 0.19 -7.39 16 16 C 0.02 0.64 5.91 -19.66 -0.12 0.52 16 17 C -0.12 -2.52 9.59 71.24 0.68 -1.83 16 18 C -0.18 -5.02 5.74 -21.26 -0.12 -5.15 16 19 C 0.03 0.64 8.80 22.31 0.20 0.83 16 20 C -0.10 -2.35 6.81 36.15 0.25 -2.10 16 21 N 0.04 1.11 4.45 -46.98 -0.21 0.90 16 22 O -0.18 -5.09 18.41 18.89 0.35 -4.74 16 23 O -0.19 -5.45 18.38 18.89 0.35 -5.11 16 24 C -0.04 -0.94 9.45 22.03 0.21 -0.73 16 25 C -0.11 -2.55 9.98 22.34 0.22 -2.33 16 26 C 0.21 6.38 6.60 40.23 0.27 6.64 16 27 N -0.59 -20.11 10.37 -186.21 -1.93 -22.04 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.05 1.49 7.64 -2.39 -0.02 1.47 16 31 H 0.08 3.88 5.94 -2.38 -0.01 3.87 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.27 12.76 8.31 -92.71 -0.77 11.99 16 34 H 0.40 13.89 8.73 -92.71 -0.81 13.08 16 35 H 0.14 5.30 6.07 -2.91 -0.02 5.28 16 36 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.08 1.70 8.10 -2.39 -0.02 1.68 16 38 H 0.10 1.49 6.51 -2.39 -0.02 1.48 16 39 H 0.17 3.34 5.92 -2.91 -0.02 3.32 16 40 H 0.17 2.93 7.57 -2.91 -0.02 2.90 16 41 H 0.17 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -53.51 347.88 3.99 -49.52 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.28 Total: 25.88 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 4.40 Total: -14.50 kcal Atomic # 7 Polarization: -89.10 SS G_CDS: -3.41 Total: -92.50 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.70 Total: -9.85 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -53.51 3.99 -49.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.551 kcal (2) G-P(sol) polarization free energy of solvation -53.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds