Wall clock time and date at job start Tue Mar 31 2020 11:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46863 * 2 1 4 4 H 1.09003 * 109.47175 * 305.74448 * 3 2 1 5 5 C 1.50695 * 109.47222 * 185.74473 * 3 2 1 6 6 H 1.08005 * 119.99542 * 335.21568 * 5 3 2 7 7 C 1.37872 * 120.00280 * 155.21629 * 5 3 2 8 8 N 1.31519 * 119.99975 * 355.62109 * 7 5 3 9 9 Si 1.86798 * 120.00387 * 175.34733 * 7 5 3 10 10 H 1.48506 * 109.47224 * 89.99615 * 9 7 5 11 11 H 1.48503 * 109.47603 * 210.00012 * 9 7 5 12 12 H 1.48506 * 109.46794 * 330.00087 * 9 7 5 13 13 N 1.46506 * 109.47129 * 65.74090 * 3 2 1 14 14 C 1.37835 * 120.00043 * 274.99899 * 13 3 2 15 15 N 1.32562 * 120.89906 * 0.02562 * 14 13 3 16 16 C 1.32353 * 121.50450 * 179.97438 * 15 14 13 17 17 N 1.31156 * 122.95727 * 0.02562 * 16 15 14 18 18 C 1.34156 * 120.49838 * 359.97438 * 17 16 15 19 19 C 1.40092 * 121.83236 * 180.02562 * 18 17 16 20 20 C 1.38635 * 119.36087 * 179.15392 * 19 18 17 21 21 C 1.47879 * 119.73483 * 180.31422 * 20 19 18 22 22 O 1.21452 * 119.99653 * 0.53927 * 21 20 19 23 23 O 1.34687 * 120.00055 * 180.54521 * 21 20 19 24 24 C 1.45200 * 116.99725 * 179.97438 * 23 21 20 25 25 C 1.40436 * 120.53569 * 0.85587 * 20 19 18 26 26 C 1.36103 * 120.77150 * 359.43521 * 25 20 19 27 27 C 1.40020 * 119.87059 * 359.97438 * 26 25 20 28 28 H 1.09004 * 109.47049 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47411 * 299.99510 * 1 2 3 30 30 H 1.09000 * 109.47181 * 60.00278 * 1 2 3 31 31 H 1.09001 * 109.46759 * 240.00525 * 2 1 3 32 32 H 1.08995 * 109.47304 * 120.00187 * 2 1 3 33 33 H 0.96998 * 119.99616 * 4.99693 * 8 7 5 34 34 H 0.97000 * 119.99579 * 94.99932 * 13 3 2 35 35 H 1.08000 * 118.52223 * 179.97438 * 16 15 14 36 36 H 1.08003 * 120.31872 * 359.97438 * 19 18 17 37 37 H 1.09008 * 109.47213 * 299.99315 * 24 23 21 38 38 H 1.09002 * 109.47373 * 59.99672 * 24 23 21 39 39 H 1.09000 * 109.47210 * 179.97438 * 24 23 21 40 40 H 1.08002 * 119.61417 * 179.44978 * 25 20 19 41 41 H 1.07999 * 120.06916 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5950 1.9852 -0.8341 5 6 3.5402 1.4450 -0.1422 6 1 4.1134 0.5840 0.1686 7 6 4.1809 2.5462 -0.6691 8 7 3.4782 3.5593 -1.1270 9 14 6.0472 2.6028 -0.7256 10 1 6.5214 2.0231 -2.0080 11 1 6.5032 4.0121 -0.6208 12 1 6.6007 1.8178 0.4070 13 7 1.6676 2.0921 1.2593 14 6 0.4242 2.6713 1.3947 15 7 -0.4487 2.6505 0.3973 16 6 -1.6460 3.2024 0.5144 17 7 -2.0514 3.8019 1.6083 18 6 -1.2475 3.8807 2.6794 19 6 -1.6520 4.5138 3.8618 20 6 -0.7861 4.5501 4.9439 21 6 -1.2073 5.2102 6.1984 22 8 -2.3115 5.7091 6.2810 23 8 -0.3662 5.2582 7.2494 24 6 -0.8463 5.9224 8.4480 25 6 0.4920 3.9751 4.8547 26 6 0.9013 3.3619 3.7106 27 6 0.0422 3.3002 2.6067 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.5133 3.5640 -1.0285 34 1 2.2962 2.1145 1.9977 35 1 -2.3191 3.1579 -0.3289 36 1 -2.6339 4.9577 3.9342 37 1 -1.0859 6.9604 8.2170 38 1 -1.7402 5.4153 8.8111 39 1 -0.0733 5.8898 9.2158 40 1 1.1578 4.0198 5.7039 41 1 1.8869 2.9238 3.6543 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:54 Heat of formation + Delta-G solvation = -22.924323 kcal Electronic energy + Delta-G solvation = -25853.432602 eV Core-core repulsion = 22119.289943 eV Total energy + Delta-G solvation = -3734.142658 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -41.10064 -40.36678 -37.57755 -36.77274 -36.49458 -33.79533 -32.23204 -31.88970 -30.76500 -29.65768 -28.07060 -26.68924 -24.84363 -24.14756 -23.21814 -21.78229 -21.36856 -20.38405 -19.06379 -18.01474 -17.28725 -17.26369 -16.67582 -16.52699 -16.20450 -15.09801 -14.88170 -14.43907 -14.20779 -13.96527 -13.90603 -13.62507 -13.56288 -13.32908 -13.11209 -12.75205 -12.51017 -12.39977 -11.92289 -11.80941 -11.38384 -11.15746 -11.01700 -10.95372 -10.88141 -10.73799 -10.44747 -10.32746 -10.24775 -9.86312 -9.17315 -9.11795 -8.77967 -8.63586 -8.55083 -7.17310 -6.72397 -4.56469 0.32292 0.89717 2.16364 2.35244 2.46244 3.23920 3.27584 3.33560 3.44057 3.71954 4.25413 4.45423 4.48305 4.51798 4.70466 4.80066 4.86630 4.94753 4.95008 5.09487 5.22388 5.24535 5.38587 5.59065 5.82604 5.88264 5.91654 5.92800 6.10235 6.13755 6.17023 6.26781 6.51045 6.55158 6.68108 6.74413 6.79971 6.94521 7.14540 7.34157 7.55405 7.60879 7.96651 8.06286 8.29760 8.49586 8.86524 9.24520 10.64005 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014642 B = 0.003762 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.790909 B = 7440.588664 C = 8588.631242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 C 0.237 3.763 4 H 0.067 0.933 5 C -0.611 4.611 6 H 0.059 0.941 7 C 0.034 3.966 8 N -0.881 5.881 9 Si 1.071 2.929 10 H -0.284 1.284 11 H -0.282 1.282 12 H -0.285 1.285 13 N -0.649 5.649 14 C 0.469 3.531 15 N -0.590 5.590 16 C 0.354 3.646 17 N -0.581 5.581 18 C 0.184 3.816 19 C -0.044 4.044 20 C -0.088 4.088 21 C 0.511 3.489 22 O -0.504 6.504 23 O -0.352 6.352 24 C 0.036 3.964 25 C -0.114 4.114 26 C -0.062 4.062 27 C -0.187 4.187 28 H 0.028 0.972 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.279 0.721 34 H 0.397 0.603 35 H 0.187 0.813 36 H 0.148 0.852 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.138 0.862 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.310 0.339 12.862 13.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.155 4.155 3 C 0.139 3.861 4 H 0.085 0.915 5 C -0.650 4.650 6 H 0.077 0.923 7 C -0.177 4.177 8 N -0.514 5.514 9 Si 0.898 3.102 10 H -0.210 1.210 11 H -0.208 1.208 12 H -0.211 1.211 13 N -0.274 5.274 14 C 0.211 3.789 15 N -0.319 5.319 16 C 0.063 3.937 17 N -0.304 5.304 18 C 0.058 3.942 19 C -0.064 4.064 20 C -0.092 4.092 21 C 0.356 3.644 22 O -0.393 6.393 23 O -0.269 6.269 24 C -0.057 4.057 25 C -0.134 4.134 26 C -0.083 4.083 27 C -0.196 4.196 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.235 0.765 35 H 0.203 0.797 36 H 0.166 0.834 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.121 0.879 40 H 0.156 0.844 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.917 1.288 11.477 12.552 hybrid contribution -0.594 -0.728 1.656 1.904 sum -5.510 0.560 13.133 14.253 Atomic orbital electron populations 1.21854 0.96882 0.98627 1.02171 1.21804 0.94399 0.98605 1.00687 1.19204 0.95335 0.89061 0.82537 0.91497 1.22168 0.90930 1.04413 1.47456 0.92268 1.26069 1.07401 0.92367 0.91822 1.70746 1.09839 1.32099 1.38687 0.83515 0.73544 0.76357 0.76807 1.20981 1.20798 1.21088 1.47356 1.09093 1.52102 1.18887 1.19257 0.87734 0.84844 0.87085 1.68219 1.04744 1.28048 1.30929 1.24521 0.89769 0.85420 0.93963 1.68749 1.35645 1.25063 1.00915 1.18444 0.88987 0.93573 0.93219 1.20993 0.99662 0.96370 0.89368 1.18971 0.96274 1.02710 0.91259 1.21261 0.82506 0.76796 0.83798 1.90831 1.21567 1.43819 1.83050 1.86554 1.45596 1.71783 1.22922 1.23294 1.01170 0.97331 0.83941 1.20806 0.94934 0.98849 0.98766 1.20715 0.98786 0.97070 0.91707 1.19354 0.97693 1.06254 0.96326 0.95304 0.93762 0.92151 0.91939 0.93784 0.90957 0.76539 0.79655 0.83399 0.91764 0.91801 0.87916 0.84383 0.84976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.47 37.16 0.31 -2.15 16 2 C -0.12 -2.27 5.58 -26.73 -0.15 -2.42 16 3 C 0.24 5.23 1.95 -69.08 -0.14 5.09 16 4 H 0.07 1.68 6.12 -51.93 -0.32 1.36 16 5 C -0.61 -14.83 8.50 -34.44 -0.29 -15.12 16 6 H 0.06 1.43 7.81 -52.48 -0.41 1.02 16 7 C 0.03 0.85 5.46 -17.82 -0.10 0.76 16 8 N -0.88 -24.22 13.62 55.43 0.76 -23.46 16 9 Si 1.07 22.49 29.91 -169.99 -5.08 17.40 16 10 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 12 H -0.29 -5.64 7.11 56.52 0.40 -5.24 16 13 N -0.65 -12.81 5.08 -54.59 -0.28 -13.08 16 14 C 0.47 8.99 6.12 -154.99 -0.95 8.04 16 15 N -0.59 -11.30 6.59 -13.52 -0.09 -11.39 16 16 C 0.35 6.09 12.22 -92.22 -1.13 4.96 16 17 N -0.58 -10.35 10.44 -12.67 -0.13 -10.48 16 18 C 0.18 3.22 6.61 -84.87 -0.56 2.66 16 19 C -0.04 -0.69 9.59 -38.74 -0.37 -1.06 16 20 C -0.09 -1.26 5.87 -104.98 -0.62 -1.88 16 21 C 0.51 7.03 7.90 34.68 0.27 7.30 16 22 O -0.50 -7.89 16.09 -19.23 -0.31 -8.20 16 23 O -0.35 -4.03 9.77 -40.46 -0.40 -4.43 16 24 C 0.04 0.29 10.56 101.05 1.07 1.36 16 25 C -0.11 -1.51 9.52 -39.52 -0.38 -1.88 16 26 C -0.06 -0.92 9.51 -39.68 -0.38 -1.29 16 27 C -0.19 -3.26 5.76 -106.58 -0.61 -3.88 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.82 5.57 -51.93 -0.29 0.53 16 30 H 0.06 1.11 7.75 -51.93 -0.40 0.70 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.28 7.80 6.66 -40.82 -0.27 7.52 16 34 H 0.40 7.27 6.82 -40.82 -0.28 7.00 16 35 H 0.19 2.53 8.06 -52.49 -0.42 2.11 16 36 H 0.15 2.25 7.62 -52.48 -0.40 1.85 16 37 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.14 1.49 7.57 -52.49 -0.40 1.09 16 41 H 0.13 1.72 6.55 -52.49 -0.34 1.38 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -29.01 345.81 -9.20 -38.20 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -4.86 Total: 9.74 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -4.01 Total: 0.48 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: 0.26 Total: -58.41 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.70 Total: -12.63 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.08 Total: 17.40 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.01 -9.20 -38.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.280 kcal (2) G-P(sol) polarization free energy of solvation -29.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds