Wall clock time and date at job start Tue Mar 31 2020 11:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46863 * 2 1 4 4 H 1.09003 * 109.47175 * 305.74448 * 3 2 1 5 5 C 1.50695 * 109.47222 * 185.74473 * 3 2 1 6 6 H 1.08005 * 119.99542 * 335.21568 * 5 3 2 7 7 C 1.37872 * 120.00280 * 155.21629 * 5 3 2 8 8 N 1.31519 * 119.99975 * 355.62109 * 7 5 3 9 9 Si 1.86798 * 120.00387 * 175.34733 * 7 5 3 10 10 H 1.48506 * 109.47224 * 89.99615 * 9 7 5 11 11 H 1.48503 * 109.47603 * 210.00012 * 9 7 5 12 12 H 1.48506 * 109.46794 * 330.00087 * 9 7 5 13 13 N 1.46506 * 109.47129 * 65.74090 * 3 2 1 14 14 C 1.37835 * 120.00043 * 274.99899 * 13 3 2 15 15 N 1.32562 * 120.89906 * 0.02562 * 14 13 3 16 16 C 1.32353 * 121.50450 * 179.97438 * 15 14 13 17 17 N 1.31156 * 122.95727 * 0.02562 * 16 15 14 18 18 C 1.34156 * 120.49838 * 359.97438 * 17 16 15 19 19 C 1.40092 * 121.83236 * 180.02562 * 18 17 16 20 20 C 1.38635 * 119.36087 * 179.15392 * 19 18 17 21 21 C 1.47879 * 119.73483 * 180.31422 * 20 19 18 22 22 O 1.21452 * 119.99653 * 0.53927 * 21 20 19 23 23 O 1.34687 * 120.00055 * 180.54521 * 21 20 19 24 24 C 1.45200 * 116.99725 * 179.97438 * 23 21 20 25 25 C 1.40436 * 120.53569 * 0.85587 * 20 19 18 26 26 C 1.36103 * 120.77150 * 359.43521 * 25 20 19 27 27 C 1.40020 * 119.87059 * 359.97438 * 26 25 20 28 28 H 1.09004 * 109.47049 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47411 * 299.99510 * 1 2 3 30 30 H 1.09000 * 109.47181 * 60.00278 * 1 2 3 31 31 H 1.09001 * 109.46759 * 240.00525 * 2 1 3 32 32 H 1.08995 * 109.47304 * 120.00187 * 2 1 3 33 33 H 0.96998 * 119.99616 * 4.99693 * 8 7 5 34 34 H 0.97000 * 119.99579 * 94.99932 * 13 3 2 35 35 H 1.08000 * 118.52223 * 179.97438 * 16 15 14 36 36 H 1.08003 * 120.31872 * 359.97438 * 19 18 17 37 37 H 1.09008 * 109.47213 * 299.99315 * 24 23 21 38 38 H 1.09002 * 109.47373 * 59.99672 * 24 23 21 39 39 H 1.09000 * 109.47210 * 179.97438 * 24 23 21 40 40 H 1.08002 * 119.61417 * 179.44978 * 25 20 19 41 41 H 1.07999 * 120.06916 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5950 1.9852 -0.8341 5 6 3.5402 1.4450 -0.1422 6 1 4.1134 0.5840 0.1686 7 6 4.1809 2.5462 -0.6691 8 7 3.4782 3.5593 -1.1270 9 14 6.0472 2.6028 -0.7256 10 1 6.5214 2.0231 -2.0080 11 1 6.5032 4.0121 -0.6208 12 1 6.6007 1.8178 0.4070 13 7 1.6676 2.0921 1.2593 14 6 0.4242 2.6713 1.3947 15 7 -0.4487 2.6505 0.3973 16 6 -1.6460 3.2024 0.5144 17 7 -2.0514 3.8019 1.6083 18 6 -1.2475 3.8807 2.6794 19 6 -1.6520 4.5138 3.8618 20 6 -0.7861 4.5501 4.9439 21 6 -1.2073 5.2102 6.1984 22 8 -2.3115 5.7091 6.2810 23 8 -0.3662 5.2582 7.2494 24 6 -0.8463 5.9224 8.4480 25 6 0.4920 3.9751 4.8547 26 6 0.9013 3.3619 3.7106 27 6 0.0422 3.3002 2.6067 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.5133 3.5640 -1.0285 34 1 2.2962 2.1145 1.9977 35 1 -2.3191 3.1579 -0.3289 36 1 -2.6339 4.9577 3.9342 37 1 -1.0859 6.9604 8.2170 38 1 -1.7402 5.4153 8.8111 39 1 -0.0733 5.8898 9.2158 40 1 1.1578 4.0198 5.7039 41 1 1.8869 2.9238 3.6543 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:53 Heat of formation + Delta-G solvation = -37.360001 kcal Electronic energy + Delta-G solvation = -25854.058580 eV Core-core repulsion = 22119.289943 eV Total energy + Delta-G solvation = -3734.768636 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.38711 -41.46773 -38.92624 -38.18057 -37.55368 -35.39176 -33.93323 -33.23145 -32.08406 -30.99115 -28.96571 -28.29278 -26.08306 -25.44901 -24.94404 -23.07252 -22.53403 -21.96271 -20.28044 -19.57469 -18.67758 -18.33096 -18.13667 -17.47639 -17.45012 -16.55064 -16.24216 -15.91547 -15.64070 -15.37895 -15.19333 -14.87587 -14.81096 -14.67973 -14.40912 -14.11107 -13.93796 -13.26840 -13.22836 -12.87355 -12.84604 -12.81012 -12.60669 -12.43745 -12.00036 -11.91103 -11.85988 -11.84843 -11.63957 -11.41057 -10.94998 -10.53719 -10.44151 -10.10441 -9.98930 -8.71105 -8.60150 -6.53563 -0.92328 -0.37211 0.85619 1.15251 1.50637 1.57359 1.61002 1.80851 2.13178 2.21971 2.53817 3.12606 3.20237 3.26337 3.31533 3.52361 3.56120 3.76239 3.99083 4.11062 4.28112 4.30993 4.34328 4.34471 4.38245 4.56349 4.63677 4.69148 4.76947 4.95107 5.02302 5.05553 5.13316 5.17759 5.19756 5.22429 5.37792 5.49597 5.61271 5.74064 5.99505 6.13990 6.36532 6.50750 6.52627 6.80379 7.35186 7.46110 8.65912 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014642 B = 0.003762 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.790909 B = 7440.588664 C = 8588.631242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.111 4.111 3 C 0.247 3.753 4 H 0.031 0.969 5 C -0.615 4.615 6 H 0.061 0.939 7 C -0.010 4.010 8 N -0.917 5.917 9 Si 1.115 2.885 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.262 1.262 13 N -0.655 5.655 14 C 0.459 3.541 15 N -0.608 5.608 16 C 0.344 3.656 17 N -0.586 5.586 18 C 0.163 3.837 19 C -0.052 4.052 20 C -0.083 4.083 21 C 0.517 3.483 22 O -0.527 6.527 23 O -0.349 6.349 24 C 0.028 3.972 25 C -0.093 4.093 26 C -0.068 4.068 27 C -0.197 4.197 28 H 0.050 0.950 29 H 0.035 0.965 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.262 0.738 34 H 0.404 0.596 35 H 0.215 0.785 36 H 0.148 0.852 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.138 0.862 40 H 0.172 0.828 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.543 -0.056 15.246 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.150 4.150 3 C 0.147 3.853 4 H 0.049 0.951 5 C -0.653 4.653 6 H 0.079 0.921 7 C -0.213 4.213 8 N -0.551 5.551 9 Si 0.937 3.063 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.187 1.187 13 N -0.282 5.282 14 C 0.202 3.798 15 N -0.338 5.338 16 C 0.054 3.946 17 N -0.309 5.309 18 C 0.037 3.963 19 C -0.072 4.072 20 C -0.087 4.087 21 C 0.362 3.638 22 O -0.417 6.417 23 O -0.265 6.265 24 C -0.065 4.065 25 C -0.112 4.112 26 C -0.088 4.088 27 C -0.206 4.206 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.242 0.758 35 H 0.231 0.769 36 H 0.166 0.834 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.156 0.844 40 H 0.189 0.811 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.179 0.888 13.902 14.544 hybrid contribution -0.943 -0.569 1.094 1.552 sum -5.122 0.319 14.997 15.850 Atomic orbital electron populations 1.21694 0.95545 0.99671 1.01262 1.21733 0.95519 0.96997 1.00787 1.18879 0.94098 0.89995 0.82357 0.95062 1.22428 0.92163 1.04058 1.46689 0.92115 1.27286 1.10741 0.92066 0.91241 1.70874 1.08933 1.33675 1.41663 0.82957 0.69398 0.76153 0.77813 1.20294 1.21620 1.18683 1.46596 1.09865 1.53433 1.18297 1.19321 0.87442 0.85067 0.87974 1.68211 1.05474 1.28669 1.31468 1.25058 0.89649 0.85176 0.94734 1.68767 1.35960 1.24891 1.01233 1.18704 0.89295 0.94469 0.93783 1.21014 1.00146 0.96626 0.89377 1.19142 0.96368 1.01971 0.91251 1.21094 0.82304 0.76251 0.84107 1.90828 1.22605 1.44810 1.83493 1.86536 1.44965 1.71732 1.23246 1.23670 1.02732 0.97037 0.83075 1.21129 0.94558 0.96490 0.99007 1.20936 0.99178 0.97409 0.91285 1.19462 0.98232 1.06371 0.96557 0.93146 0.94590 0.93118 0.92359 0.92973 0.92693 0.75755 0.76913 0.83409 0.91719 0.91565 0.84425 0.81096 0.83260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.39 8.47 71.98 0.61 -3.78 16 2 C -0.11 -4.33 5.58 30.59 0.17 -4.15 16 3 C 0.25 11.07 1.95 44.24 0.09 11.15 16 4 H 0.03 1.64 6.12 -2.39 -0.01 1.62 16 5 C -0.62 -29.94 8.50 25.60 0.22 -29.72 16 6 H 0.06 2.88 7.81 -2.91 -0.02 2.86 16 7 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 8 N -0.92 -51.74 13.62 21.45 0.29 -51.45 16 9 Si 1.11 44.99 29.91 68.60 2.05 47.04 16 10 H -0.28 -10.81 7.11 99.48 0.71 -10.11 16 11 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 13 N -0.66 -26.02 5.08 -326.61 -1.66 -27.68 16 14 C 0.46 17.79 6.12 134.07 0.82 18.61 16 15 N -0.61 -23.80 6.59 -196.70 -1.30 -25.10 16 16 C 0.34 11.97 12.22 180.91 2.21 14.18 16 17 N -0.59 -20.99 10.44 -193.99 -2.03 -23.02 16 18 C 0.16 5.68 6.61 40.07 0.26 5.94 16 19 C -0.05 -1.60 9.59 22.81 0.22 -1.38 16 20 C -0.08 -2.23 5.87 -20.09 -0.12 -2.35 16 21 C 0.52 13.12 7.90 70.38 0.56 13.67 16 22 O -0.53 -15.78 16.09 19.99 0.32 -15.46 16 23 O -0.35 -6.91 9.77 -55.96 -0.55 -7.45 16 24 C 0.03 0.36 10.56 113.37 1.20 1.55 16 25 C -0.09 -2.20 9.52 22.31 0.21 -1.99 16 26 C -0.07 -1.87 9.51 22.21 0.21 -1.66 16 27 C -0.20 -6.82 5.76 -21.14 -0.12 -6.94 16 28 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.04 1.32 5.57 -2.39 -0.01 1.31 16 30 H 0.05 1.87 7.75 -2.39 -0.02 1.85 16 31 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.26 15.33 6.66 -92.71 -0.62 14.72 16 34 H 0.40 14.69 6.82 -92.71 -0.63 14.05 16 35 H 0.21 5.82 8.06 -2.91 -0.02 5.80 16 36 H 0.15 4.48 7.62 -2.91 -0.02 4.46 16 37 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.17 2.94 7.57 -2.91 -0.02 2.92 16 41 H 0.15 3.58 6.55 -2.91 -0.02 3.56 16 Total: -1.00 -63.70 345.81 4.73 -58.96 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 0.60 Total: 31.07 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 7.00 Total: 13.09 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -4.69 Total: -127.25 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.23 Total: -22.91 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.05 Total: 47.04 kcal Total: -63.70 4.73 -58.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.602 kcal (2) G-P(sol) polarization free energy of solvation -63.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds