Wall clock time and date at job start Tue Mar 31 2020 12:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36098 * 116.99536 * 2 1 4 4 C 1.38529 * 120.00138 * 0.02562 * 3 2 1 5 5 C 1.38215 * 120.07354 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.96789 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46987 * 265.00256 * 6 5 4 8 8 H 1.07995 * 120.00086 * 359.97438 * 7 6 5 9 9 C 1.37883 * 119.99535 * 180.02562 * 7 6 5 10 10 N 1.31506 * 120.00360 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99663 * 179.97438 * 9 7 6 12 12 H 1.48511 * 109.47252 * 59.99977 * 11 9 7 13 13 H 1.48502 * 109.47186 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47400 * 300.00188 * 11 9 7 15 15 C 1.38860 * 120.06649 * 359.97438 * 5 4 3 16 16 N 1.39925 * 120.00353 * 179.97438 * 15 5 4 17 17 C 1.46495 * 120.00358 * 179.97438 * 16 15 5 18 18 C 1.53001 * 109.46974 * 179.97438 * 17 16 15 19 19 C 1.53004 * 109.46976 * 180.02562 * 18 17 16 20 20 F 1.39896 * 109.47200 * 299.99808 * 18 17 16 21 21 F 1.39898 * 109.47085 * 60.00170 * 18 17 16 22 22 C 1.38827 * 119.99974 * 359.97438 * 15 5 4 23 23 C 1.38525 * 119.92660 * 359.75070 * 22 15 5 24 24 O 1.35997 * 120.03411 * 180.27531 * 23 22 15 25 25 C 1.42900 * 116.99711 * 0.22883 * 24 23 22 26 26 H 1.09002 * 109.47382 * 59.99973 * 1 2 3 27 27 H 1.09001 * 109.46938 * 299.99959 * 1 2 3 28 28 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 29 29 H 1.07999 * 119.96718 * 359.95629 * 4 3 2 30 30 H 1.09003 * 109.46569 * 24.99919 * 6 5 4 31 31 H 1.08996 * 109.46974 * 144.99832 * 6 5 4 32 32 H 0.97003 * 120.00450 * 180.02562 * 10 9 7 33 33 H 0.97002 * 119.99296 * 359.97438 * 16 15 5 34 34 H 1.08993 * 109.47229 * 299.99996 * 17 16 15 35 35 H 1.09001 * 109.47023 * 60.00294 * 17 16 15 36 36 H 1.09001 * 109.47096 * 60.00407 * 19 18 17 37 37 H 1.08997 * 109.47172 * 180.02562 * 19 18 17 38 38 H 1.09003 * 109.47134 * 300.00113 * 19 18 17 39 39 H 1.07999 * 120.03607 * 180.02562 * 22 15 5 40 40 H 1.08995 * 109.47479 * 60.00119 * 25 24 23 41 41 H 1.09006 * 109.46530 * 179.97438 * 25 24 23 42 42 H 1.09000 * 109.47340 * 300.00049 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2127 0.0000 4 6 1.2923 2.3744 0.0005 5 6 1.9181 3.6068 0.0011 6 6 1.0949 4.8691 0.0022 7 6 0.9236 5.3583 -1.4128 8 1 1.3669 4.8103 -2.2310 9 6 0.2019 6.5063 -1.6626 10 7 -0.3374 7.1739 -0.6662 11 14 -0.0099 7.1132 -3.4165 12 1 -0.7007 6.0729 -4.2203 13 1 -0.8211 8.3570 -3.4154 14 1 1.3233 7.3917 -4.0084 15 6 3.3046 3.6829 0.0016 16 7 3.9368 4.9312 0.0016 17 6 5.3995 5.0116 0.0027 18 6 5.8296 6.4799 0.0019 19 6 7.3574 6.5638 0.0024 20 9 5.3288 7.1118 -1.1414 21 9 5.3269 7.1137 1.1432 22 6 4.0636 2.5205 0.0021 23 6 3.4362 1.2855 0.0074 24 8 4.1776 0.1454 0.0136 25 6 5.5987 0.2958 0.0194 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2138 2.3172 0.0002 30 1 0.1165 4.6643 0.4368 31 1 1.6018 5.6328 0.5920 32 1 -0.8455 7.9813 -0.8420 33 1 3.4064 5.7434 0.0009 34 1 5.7898 4.5188 0.8932 35 1 5.7912 4.5181 -0.8868 36 1 7.7487 6.0700 -0.8871 37 1 7.6638 7.6098 0.0022 38 1 7.7480 6.0712 0.8929 39 1 5.1420 2.5791 0.0030 40 1 5.9021 0.8472 0.9093 41 1 6.0680 -0.6881 0.0245 42 1 5.9099 0.8427 -0.8706 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162233776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:18 Heat of formation + Delta-G solvation = -153.601439 kcal Electronic energy + Delta-G solvation = -27214.598427 eV Core-core repulsion = 23024.099997 eV Total energy + Delta-G solvation = -4190.498430 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.85805 -46.84897 -40.05692 -37.93444 -37.57065 -34.77918 -33.13988 -31.97736 -30.79005 -28.83538 -27.82689 -26.88982 -26.65347 -24.87855 -23.05823 -22.09632 -20.86750 -20.36331 -18.10409 -17.56158 -17.22608 -16.72662 -16.31156 -16.08638 -15.82399 -15.61293 -14.88810 -14.84469 -14.57908 -14.41520 -14.15602 -13.95571 -13.60126 -13.54462 -13.17150 -13.04096 -12.74654 -12.52391 -12.47770 -12.18450 -12.12140 -11.93830 -11.64215 -11.28598 -11.12986 -11.01445 -10.85724 -10.79625 -10.71504 -10.51434 -10.42983 -9.54755 -9.41638 -8.79345 -8.41261 -7.82690 -6.42852 -5.99948 -4.06944 1.98272 2.26237 3.33301 3.37146 3.40947 3.54195 3.66378 3.78116 3.89219 4.05500 4.32468 4.39997 4.54039 4.62517 5.13552 5.19303 5.20190 5.29534 5.30038 5.33782 5.43179 5.48569 5.56294 5.57574 5.58587 5.68387 5.75353 5.78890 5.94621 5.97225 6.15387 6.49234 6.80540 7.02741 7.17790 7.44567 7.54025 7.70750 7.82478 7.93163 8.17409 8.27139 8.34379 8.98403 9.57546 11.06133 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008079 B = 0.006446 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3464.800671 B = 4342.987249 C = 7116.173737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.040 3.960 4 C -0.128 4.128 5 C -0.096 4.096 6 C 0.060 3.940 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.060 3.940 10 N -0.893 5.893 11 Si 0.892 3.108 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.219 3.781 16 N -0.738 5.738 17 C 0.092 3.908 18 C 0.279 3.721 19 C -0.192 4.192 20 F -0.191 7.191 21 F -0.195 7.195 22 C -0.253 4.253 23 C 0.113 3.887 24 O -0.311 6.311 25 C 0.031 3.969 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.132 0.868 30 H 0.028 0.972 31 H 0.024 0.976 32 H 0.262 0.738 33 H 0.418 0.582 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.767 -7.882 2.923 16.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.232 6.232 3 C -0.005 4.005 4 C -0.148 4.148 5 C -0.100 4.100 6 C 0.023 3.977 7 C -0.549 4.549 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.532 5.532 11 Si 0.719 3.281 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.202 1.202 15 C 0.116 3.884 16 N -0.373 5.373 17 C -0.035 4.035 18 C 0.242 3.758 19 C -0.250 4.250 20 F -0.172 7.172 21 F -0.176 7.176 22 C -0.277 4.277 23 C 0.068 3.932 24 O -0.225 6.225 25 C -0.064 4.064 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.108 0.892 29 H 0.150 0.850 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.258 0.742 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.141 0.859 40 H 0.067 0.933 41 H 0.110 0.890 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.844 -8.079 2.965 16.301 hybrid contribution -0.429 1.228 -1.039 1.664 sum 13.415 -6.852 1.926 15.186 Atomic orbital electron populations 1.22918 0.79621 1.02716 1.01291 1.86064 1.20125 1.26505 1.90523 1.17949 0.88720 0.84844 1.09029 1.20773 0.99558 0.90309 1.04142 1.19936 0.91578 0.96940 1.01498 1.18123 0.94022 0.88121 0.97470 1.21034 1.33041 1.08770 0.92005 0.92575 1.24985 0.95540 0.96595 0.96988 1.69937 1.34909 1.17564 1.30794 0.86656 0.78248 0.78077 0.85085 1.20229 1.21289 1.20170 1.17195 0.91049 0.84359 0.95752 1.44424 1.02991 1.06781 1.83136 1.22196 0.84982 0.92865 1.03462 1.21321 0.93146 0.89093 0.72229 1.22735 0.91194 1.05576 1.05480 1.93084 1.89358 1.84104 1.50671 1.93049 1.89371 1.84148 1.51079 1.20262 0.98859 0.90298 1.18231 1.17686 0.87779 0.84896 1.02877 1.86120 1.17810 1.28872 1.89720 1.22907 0.79922 1.02835 1.00782 0.92916 0.93146 0.89223 0.85048 0.95346 0.95773 0.92819 0.74181 0.90164 0.90095 0.89082 0.89682 0.89143 0.85861 0.93293 0.89030 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.32 -5.74 10.28 -34.66 -0.36 -6.10 16 3 C 0.04 0.78 6.70 -39.14 -0.26 0.52 16 4 C -0.13 -2.60 8.66 -39.48 -0.34 -2.95 16 5 C -0.10 -2.10 5.09 -104.40 -0.53 -2.63 16 6 C 0.06 1.51 4.53 -29.04 -0.13 1.38 16 7 C -0.51 -14.07 9.09 -34.44 -0.31 -14.38 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 11 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.22 4.30 6.63 -83.71 -0.56 3.74 16 16 N -0.74 -13.60 5.50 -58.61 -0.32 -13.92 16 17 C 0.09 1.23 4.43 -4.04 -0.02 1.21 16 18 C 0.28 3.69 2.06 -26.73 -0.06 3.64 16 19 C -0.19 -1.59 9.38 37.16 0.35 -1.24 16 20 F -0.19 -3.18 16.92 2.25 0.04 -3.14 16 21 F -0.20 -3.05 16.92 2.25 0.04 -3.01 16 22 C -0.25 -4.36 8.30 -39.26 -0.33 -4.68 16 23 C 0.11 2.07 6.70 -39.14 -0.26 1.81 16 24 O -0.31 -5.18 10.28 -34.34 -0.35 -5.53 16 25 C 0.03 0.35 9.81 101.05 0.99 1.34 16 26 H 0.05 0.73 7.66 -51.93 -0.40 0.33 16 27 H 0.05 0.66 7.66 -51.93 -0.40 0.27 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.13 2.52 6.29 -52.49 -0.33 2.19 16 30 H 0.03 0.76 8.05 -51.93 -0.42 0.34 16 31 H 0.02 0.64 6.80 -51.93 -0.35 0.29 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.42 8.85 6.46 -40.82 -0.26 8.59 16 34 H 0.08 0.90 7.95 -51.93 -0.41 0.48 16 35 H 0.08 0.96 7.95 -51.93 -0.41 0.55 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.12 1.72 4.97 -52.49 -0.26 1.46 16 40 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 LS Contribution 356.57 15.07 5.37 5.37 Total: -1.00 -32.85 356.57 -6.13 -38.98 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.70 Total: 5.26 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -0.56 Total: -9.24 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.41 Total: -39.32 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -0.71 Total: -11.63 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.08 Total: -6.15 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.85 -6.13 -38.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162233776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.623 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds