Wall clock time and date at job start Tue Mar 31 2020 12:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36098 * 116.99536 * 2 1 4 4 C 1.38529 * 120.00138 * 0.02562 * 3 2 1 5 5 C 1.38215 * 120.07354 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.96789 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46987 * 265.00256 * 6 5 4 8 8 H 1.07995 * 120.00086 * 359.97438 * 7 6 5 9 9 C 1.37883 * 119.99535 * 180.02562 * 7 6 5 10 10 N 1.31506 * 120.00360 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99663 * 179.97438 * 9 7 6 12 12 H 1.48511 * 109.47252 * 59.99977 * 11 9 7 13 13 H 1.48502 * 109.47186 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47400 * 300.00188 * 11 9 7 15 15 C 1.38860 * 120.06649 * 359.97438 * 5 4 3 16 16 N 1.39925 * 120.00353 * 179.97438 * 15 5 4 17 17 C 1.46495 * 120.00358 * 179.97438 * 16 15 5 18 18 C 1.53001 * 109.46974 * 179.97438 * 17 16 15 19 19 C 1.53004 * 109.46976 * 180.02562 * 18 17 16 20 20 F 1.39896 * 109.47200 * 299.99808 * 18 17 16 21 21 F 1.39898 * 109.47085 * 60.00170 * 18 17 16 22 22 C 1.38827 * 119.99974 * 359.97438 * 15 5 4 23 23 C 1.38525 * 119.92660 * 359.75070 * 22 15 5 24 24 O 1.35997 * 120.03411 * 180.27531 * 23 22 15 25 25 C 1.42900 * 116.99711 * 0.22883 * 24 23 22 26 26 H 1.09002 * 109.47382 * 59.99973 * 1 2 3 27 27 H 1.09001 * 109.46938 * 299.99959 * 1 2 3 28 28 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 29 29 H 1.07999 * 119.96718 * 359.95629 * 4 3 2 30 30 H 1.09003 * 109.46569 * 24.99919 * 6 5 4 31 31 H 1.08996 * 109.46974 * 144.99832 * 6 5 4 32 32 H 0.97003 * 120.00450 * 180.02562 * 10 9 7 33 33 H 0.97002 * 119.99296 * 359.97438 * 16 15 5 34 34 H 1.08993 * 109.47229 * 299.99996 * 17 16 15 35 35 H 1.09001 * 109.47023 * 60.00294 * 17 16 15 36 36 H 1.09001 * 109.47096 * 60.00407 * 19 18 17 37 37 H 1.08997 * 109.47172 * 180.02562 * 19 18 17 38 38 H 1.09003 * 109.47134 * 300.00113 * 19 18 17 39 39 H 1.07999 * 120.03607 * 180.02562 * 22 15 5 40 40 H 1.08995 * 109.47479 * 60.00119 * 25 24 23 41 41 H 1.09006 * 109.46530 * 179.97438 * 25 24 23 42 42 H 1.09000 * 109.47340 * 300.00049 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2127 0.0000 4 6 1.2923 2.3744 0.0005 5 6 1.9181 3.6068 0.0011 6 6 1.0949 4.8691 0.0022 7 6 0.9236 5.3583 -1.4128 8 1 1.3669 4.8103 -2.2310 9 6 0.2019 6.5063 -1.6626 10 7 -0.3374 7.1739 -0.6662 11 14 -0.0099 7.1132 -3.4165 12 1 -0.7007 6.0729 -4.2203 13 1 -0.8211 8.3570 -3.4154 14 1 1.3233 7.3917 -4.0084 15 6 3.3046 3.6829 0.0016 16 7 3.9368 4.9312 0.0016 17 6 5.3995 5.0116 0.0027 18 6 5.8296 6.4799 0.0019 19 6 7.3574 6.5638 0.0024 20 9 5.3288 7.1118 -1.1414 21 9 5.3269 7.1137 1.1432 22 6 4.0636 2.5205 0.0021 23 6 3.4362 1.2855 0.0074 24 8 4.1776 0.1454 0.0136 25 6 5.5987 0.2958 0.0194 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2138 2.3172 0.0002 30 1 0.1165 4.6643 0.4368 31 1 1.6018 5.6328 0.5920 32 1 -0.8455 7.9813 -0.8420 33 1 3.4064 5.7434 0.0009 34 1 5.7898 4.5188 0.8932 35 1 5.7912 4.5181 -0.8868 36 1 7.7487 6.0700 -0.8871 37 1 7.6638 7.6098 0.0022 38 1 7.7480 6.0712 0.8929 39 1 5.1420 2.5791 0.0030 40 1 5.9021 0.8472 0.9093 41 1 6.0680 -0.6881 0.0245 42 1 5.9099 0.8427 -0.8706 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162233776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:17 Heat of formation + Delta-G solvation = -174.332949 kcal Electronic energy + Delta-G solvation = -27215.497413 eV Core-core repulsion = 23024.099997 eV Total energy + Delta-G solvation = -4191.397415 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.97956 -48.00591 -41.44354 -39.20706 -38.95206 -36.10359 -35.13159 -33.00254 -32.49469 -30.05980 -29.31724 -28.02690 -27.93215 -26.24251 -24.84334 -23.23984 -22.16891 -21.88726 -19.38985 -18.65385 -18.55361 -18.44414 -17.98796 -17.26756 -17.05057 -16.84925 -16.57005 -16.12074 -15.99763 -15.69250 -15.30157 -15.16914 -15.06452 -14.74639 -14.40365 -14.32285 -14.10477 -13.76360 -13.58958 -13.39877 -13.30487 -13.20878 -13.04952 -12.90799 -12.68562 -12.50261 -12.28338 -12.14922 -12.09595 -11.94056 -11.86026 -11.44613 -11.35622 -10.59475 -10.21917 -9.26808 -8.25047 -7.79593 -6.30314 0.50207 0.77551 1.36900 1.38747 1.46608 2.34632 2.38706 2.51889 2.59720 2.75045 2.95707 3.12061 3.15785 3.44237 3.64725 3.95300 4.24257 4.28606 4.36721 4.38937 4.42939 4.46152 4.51339 4.53622 4.58713 4.62103 4.71797 4.77849 4.81231 4.82803 4.96951 5.02576 5.16458 5.34675 5.39808 5.65695 5.76035 5.88179 6.19561 6.27353 6.42401 6.68491 6.80983 6.83559 7.37807 8.89630 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008079 B = 0.006446 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3464.800671 B = 4342.987249 C = 7116.173737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.329 6.329 3 C 0.026 3.974 4 C -0.132 4.132 5 C -0.136 4.136 6 C 0.076 3.924 7 C -0.516 4.516 8 H 0.048 0.952 9 C 0.010 3.990 10 N -0.927 5.927 11 Si 0.954 3.046 12 H -0.269 1.269 13 H -0.281 1.281 14 H -0.272 1.272 15 C 0.214 3.786 16 N -0.750 5.750 17 C 0.085 3.915 18 C 0.264 3.736 19 C -0.181 4.181 20 F -0.217 7.217 21 F -0.215 7.215 22 C -0.241 4.241 23 C 0.121 3.879 24 O -0.326 6.326 25 C 0.017 3.983 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.123 0.877 29 H 0.129 0.871 30 H -0.001 1.001 31 H 0.002 0.998 32 H 0.264 0.736 33 H 0.400 0.600 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.163 0.837 40 H 0.065 0.935 41 H 0.119 0.881 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.534 -9.455 2.203 19.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.244 6.244 3 C -0.020 4.020 4 C -0.152 4.152 5 C -0.141 4.141 6 C 0.039 3.961 7 C -0.554 4.554 8 H 0.066 0.934 9 C -0.188 4.188 10 N -0.567 5.567 11 Si 0.779 3.221 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.198 1.198 15 C 0.111 3.889 16 N -0.382 5.382 17 C -0.040 4.040 18 C 0.228 3.772 19 C -0.238 4.238 20 F -0.198 7.198 21 F -0.196 7.196 22 C -0.264 4.264 23 C 0.075 3.925 24 O -0.241 6.241 25 C -0.077 4.077 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.018 0.982 31 H 0.020 0.980 32 H 0.073 0.927 33 H 0.236 0.764 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.105 0.895 38 H 0.134 0.866 39 H 0.180 0.820 40 H 0.083 0.917 41 H 0.137 0.863 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.650 -9.678 2.245 19.388 hybrid contribution -1.222 1.598 -0.765 2.152 sum 15.427 -8.080 1.480 17.478 Atomic orbital electron populations 1.23176 0.77791 1.04915 1.01236 1.86042 1.22072 1.25827 1.90467 1.18078 0.89640 0.84805 1.09478 1.20724 0.99670 0.90461 1.04297 1.19693 0.92797 0.95758 1.05821 1.17774 0.92941 0.89551 0.95855 1.21257 1.32598 1.08744 0.92845 0.93366 1.25787 0.95296 0.96814 1.00930 1.70055 1.35748 1.18037 1.32835 0.85669 0.78305 0.77780 0.80341 1.19411 1.20598 1.19774 1.17314 0.90402 0.85727 0.95447 1.44630 1.05133 1.05524 1.82915 1.22598 0.81995 0.93574 1.05835 1.22019 0.96013 0.88486 0.70669 1.22762 0.86760 1.06504 1.07811 1.93028 1.90073 1.84635 1.52100 1.93007 1.90004 1.84554 1.52084 1.20501 1.00502 0.88735 1.16696 1.17877 0.87811 0.85895 1.00964 1.86115 1.20609 1.28128 1.89206 1.23336 0.76923 1.05278 1.02152 0.93332 0.92891 0.85872 0.85371 0.98239 0.97973 0.92728 0.76382 0.87165 0.87817 0.86919 0.89467 0.86592 0.81987 0.91664 0.86272 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 9.81 113.37 1.11 1.76 16 2 O -0.33 -11.67 10.28 -80.70 -0.83 -12.50 16 3 C 0.03 1.00 6.70 22.55 0.15 1.15 16 4 C -0.13 -5.53 8.66 22.33 0.19 -5.34 16 5 C -0.14 -6.22 5.09 -19.72 -0.10 -6.32 16 6 C 0.08 4.09 4.53 29.10 0.13 4.22 16 7 C -0.52 -29.62 9.09 25.60 0.23 -29.39 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.01 0.58 5.46 84.66 0.46 1.04 16 10 N -0.93 -56.19 13.29 21.45 0.28 -55.91 16 11 Si 0.95 45.40 29.54 68.60 2.03 47.43 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 14 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 15 C 0.21 8.39 6.63 38.14 0.25 8.64 16 16 N -0.75 -27.60 5.50 -339.33 -1.87 -29.47 16 17 C 0.08 2.07 4.43 86.38 0.38 2.45 16 18 C 0.26 6.65 2.06 30.60 0.06 6.71 16 19 C -0.18 -2.43 9.38 71.98 0.68 -1.75 16 20 F -0.22 -7.21 16.92 44.97 0.76 -6.45 16 21 F -0.22 -6.71 16.92 44.97 0.76 -5.95 16 22 C -0.24 -7.75 8.30 22.48 0.19 -7.56 16 23 C 0.12 4.20 6.70 22.55 0.15 4.35 16 24 O -0.33 -9.90 10.28 -79.54 -0.82 -10.71 16 25 C 0.02 0.31 9.81 113.37 1.11 1.43 16 26 H 0.05 1.35 7.66 -2.39 -0.02 1.33 16 27 H 0.05 1.40 7.66 -2.39 -0.02 1.38 16 28 H 0.12 2.47 8.14 -2.38 -0.02 2.45 16 29 H 0.13 5.22 6.29 -2.91 -0.02 5.20 16 30 H 0.00 -0.04 8.05 -2.39 -0.02 -0.06 16 31 H 0.00 0.12 6.80 -2.39 -0.02 0.11 16 32 H 0.26 15.15 8.31 -92.71 -0.77 14.37 16 33 H 0.40 17.65 6.46 -92.71 -0.60 17.06 16 34 H 0.11 2.04 7.95 -2.39 -0.02 2.02 16 35 H 0.10 2.08 7.95 -2.39 -0.02 2.06 16 36 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.16 3.78 4.97 -2.91 -0.01 3.77 16 40 H 0.06 1.00 7.67 -2.39 -0.02 0.98 16 41 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.06 0.99 7.65 -2.39 -0.02 0.98 16 Total: -1.00 -74.89 356.57 5.78 -69.11 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.45 Total: 23.05 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 5.01 Total: -18.60 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -1.58 Total: -85.37 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -1.65 Total: -23.21 kcal Atomic # 9 Polarization: -13.92 SS G_CDS: 1.52 Total: -12.40 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -74.89 5.78 -69.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162233776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.219 kcal (2) G-P(sol) polarization free energy of solvation -74.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds