Wall clock time and date at job start Tue Mar 31 2020 12:05:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.36098 * 116.99536 * 2 1
4 4 C 1.38529 * 120.00138 * 0.02562 * 3 2 1
5 5 C 1.38215 * 120.07354 * 179.97438 * 4 3 2
6 6 C 1.50697 * 119.96789 * 180.02562 * 5 4 3
7 7 C 1.50699 * 109.46987 * 265.00256 * 6 5 4
8 8 H 1.07995 * 120.00086 * 359.97438 * 7 6 5
9 9 C 1.37883 * 119.99535 * 180.02562 * 7 6 5
10 10 N 1.31506 * 120.00360 * 359.97438 * 9 7 6
11 11 Si 1.86796 * 119.99663 * 179.97438 * 9 7 6
12 12 H 1.48511 * 109.47252 * 59.99977 * 11 9 7
13 13 H 1.48502 * 109.47186 * 179.97438 * 11 9 7
14 14 H 1.48503 * 109.47400 * 300.00188 * 11 9 7
15 15 C 1.38860 * 120.06649 * 359.97438 * 5 4 3
16 16 N 1.39925 * 120.00353 * 179.97438 * 15 5 4
17 17 C 1.46495 * 120.00358 * 179.97438 * 16 15 5
18 18 C 1.53001 * 109.46974 * 179.97438 * 17 16 15
19 19 C 1.53004 * 109.46976 * 180.02562 * 18 17 16
20 20 F 1.39896 * 109.47200 * 299.99808 * 18 17 16
21 21 F 1.39898 * 109.47085 * 60.00170 * 18 17 16
22 22 C 1.38827 * 119.99974 * 359.97438 * 15 5 4
23 23 C 1.38525 * 119.92660 * 359.75070 * 22 15 5
24 24 O 1.35997 * 120.03411 * 180.27531 * 23 22 15
25 25 C 1.42900 * 116.99711 * 0.22883 * 24 23 22
26 26 H 1.09002 * 109.47382 * 59.99973 * 1 2 3
27 27 H 1.09001 * 109.46938 * 299.99959 * 1 2 3
28 28 H 1.09004 * 109.46926 * 180.02562 * 1 2 3
29 29 H 1.07999 * 119.96718 * 359.95629 * 4 3 2
30 30 H 1.09003 * 109.46569 * 24.99919 * 6 5 4
31 31 H 1.08996 * 109.46974 * 144.99832 * 6 5 4
32 32 H 0.97003 * 120.00450 * 180.02562 * 10 9 7
33 33 H 0.97002 * 119.99296 * 359.97438 * 16 15 5
34 34 H 1.08993 * 109.47229 * 299.99996 * 17 16 15
35 35 H 1.09001 * 109.47023 * 60.00294 * 17 16 15
36 36 H 1.09001 * 109.47096 * 60.00407 * 19 18 17
37 37 H 1.08997 * 109.47172 * 180.02562 * 19 18 17
38 38 H 1.09003 * 109.47134 * 300.00113 * 19 18 17
39 39 H 1.07999 * 120.03607 * 180.02562 * 22 15 5
40 40 H 1.08995 * 109.47479 * 60.00119 * 25 24 23
41 41 H 1.09006 * 109.46530 * 179.97438 * 25 24 23
42 42 H 1.09000 * 109.47340 * 300.00049 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0468 1.2127 0.0000
4 6 1.2923 2.3744 0.0005
5 6 1.9181 3.6068 0.0011
6 6 1.0949 4.8691 0.0022
7 6 0.9236 5.3583 -1.4128
8 1 1.3669 4.8103 -2.2310
9 6 0.2019 6.5063 -1.6626
10 7 -0.3374 7.1739 -0.6662
11 14 -0.0099 7.1132 -3.4165
12 1 -0.7007 6.0729 -4.2203
13 1 -0.8211 8.3570 -3.4154
14 1 1.3233 7.3917 -4.0084
15 6 3.3046 3.6829 0.0016
16 7 3.9368 4.9312 0.0016
17 6 5.3995 5.0116 0.0027
18 6 5.8296 6.4799 0.0019
19 6 7.3574 6.5638 0.0024
20 9 5.3288 7.1118 -1.1414
21 9 5.3269 7.1137 1.1432
22 6 4.0636 2.5205 0.0021
23 6 3.4362 1.2855 0.0074
24 8 4.1776 0.1454 0.0136
25 6 5.5987 0.2958 0.0194
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 -1.0277 0.0005
29 1 0.2138 2.3172 0.0002
30 1 0.1165 4.6643 0.4368
31 1 1.6018 5.6328 0.5920
32 1 -0.8455 7.9813 -0.8420
33 1 3.4064 5.7434 0.0009
34 1 5.7898 4.5188 0.8932
35 1 5.7912 4.5181 -0.8868
36 1 7.7487 6.0700 -0.8871
37 1 7.6638 7.6098 0.0022
38 1 7.7480 6.0712 0.8929
39 1 5.1420 2.5791 0.0030
40 1 5.9021 0.8472 0.9093
41 1 6.0680 -0.6881 0.0245
42 1 5.9099 0.8427 -0.8706
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001162233776.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:05:17
Heat of formation + Delta-G solvation = -174.332949 kcal
Electronic energy + Delta-G solvation = -27215.497413 eV
Core-core repulsion = 23024.099997 eV
Total energy + Delta-G solvation = -4191.397415 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.143 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-49.97956 -48.00591 -41.44354 -39.20706 -38.95206 -36.10359 -35.13159 -33.00254
-32.49469 -30.05980 -29.31724 -28.02690 -27.93215 -26.24251 -24.84334 -23.23984
-22.16891 -21.88726 -19.38985 -18.65385 -18.55361 -18.44414 -17.98796 -17.26756
-17.05057 -16.84925 -16.57005 -16.12074 -15.99763 -15.69250 -15.30157 -15.16914
-15.06452 -14.74639 -14.40365 -14.32285 -14.10477 -13.76360 -13.58958 -13.39877
-13.30487 -13.20878 -13.04952 -12.90799 -12.68562 -12.50261 -12.28338 -12.14922
-12.09595 -11.94056 -11.86026 -11.44613 -11.35622 -10.59475 -10.21917 -9.26808
-8.25047 -7.79593 -6.30314 0.50207 0.77551 1.36900 1.38747 1.46608
2.34632 2.38706 2.51889 2.59720 2.75045 2.95707 3.12061 3.15785
3.44237 3.64725 3.95300 4.24257 4.28606 4.36721 4.38937 4.42939
4.46152 4.51339 4.53622 4.58713 4.62103 4.71797 4.77849 4.81231
4.82803 4.96951 5.02576 5.16458 5.34675 5.39808 5.65695 5.76035
5.88179 6.19561 6.27353 6.42401 6.68491 6.80983 6.83559 7.37807
8.89630
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.008079 B = 0.006446 C = 0.003934
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3464.800671 B = 4342.987249 C = 7116.173737
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.329 6.329
3 C 0.026 3.974
4 C -0.132 4.132
5 C -0.136 4.136
6 C 0.076 3.924
7 C -0.516 4.516
8 H 0.048 0.952
9 C 0.010 3.990
10 N -0.927 5.927
11 Si 0.954 3.046
12 H -0.269 1.269
13 H -0.281 1.281
14 H -0.272 1.272
15 C 0.214 3.786
16 N -0.750 5.750
17 C 0.085 3.915
18 C 0.264 3.736
19 C -0.181 4.181
20 F -0.217 7.217
21 F -0.215 7.215
22 C -0.241 4.241
23 C 0.121 3.879
24 O -0.326 6.326
25 C 0.017 3.983
26 H 0.048 0.952
27 H 0.052 0.948
28 H 0.123 0.877
29 H 0.129 0.871
30 H -0.001 1.001
31 H 0.002 0.998
32 H 0.264 0.736
33 H 0.400 0.600
34 H 0.111 0.889
35 H 0.104 0.896
36 H 0.112 0.888
37 H 0.086 0.914
38 H 0.115 0.885
39 H 0.163 0.837
40 H 0.065 0.935
41 H 0.119 0.881
42 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.534 -9.455 2.203 19.174
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.244 6.244
3 C -0.020 4.020
4 C -0.152 4.152
5 C -0.141 4.141
6 C 0.039 3.961
7 C -0.554 4.554
8 H 0.066 0.934
9 C -0.188 4.188
10 N -0.567 5.567
11 Si 0.779 3.221
12 H -0.194 1.194
13 H -0.206 1.206
14 H -0.198 1.198
15 C 0.111 3.889
16 N -0.382 5.382
17 C -0.040 4.040
18 C 0.228 3.772
19 C -0.238 4.238
20 F -0.198 7.198
21 F -0.196 7.196
22 C -0.264 4.264
23 C 0.075 3.925
24 O -0.241 6.241
25 C -0.077 4.077
26 H 0.067 0.933
27 H 0.071 0.929
28 H 0.141 0.859
29 H 0.146 0.854
30 H 0.018 0.982
31 H 0.020 0.980
32 H 0.073 0.927
33 H 0.236 0.764
34 H 0.128 0.872
35 H 0.122 0.878
36 H 0.131 0.869
37 H 0.105 0.895
38 H 0.134 0.866
39 H 0.180 0.820
40 H 0.083 0.917
41 H 0.137 0.863
42 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 16.650 -9.678 2.245 19.388
hybrid contribution -1.222 1.598 -0.765 2.152
sum 15.427 -8.080 1.480 17.478
Atomic orbital electron populations
1.23176 0.77791 1.04915 1.01236 1.86042 1.22072 1.25827 1.90467
1.18078 0.89640 0.84805 1.09478 1.20724 0.99670 0.90461 1.04297
1.19693 0.92797 0.95758 1.05821 1.17774 0.92941 0.89551 0.95855
1.21257 1.32598 1.08744 0.92845 0.93366 1.25787 0.95296 0.96814
1.00930 1.70055 1.35748 1.18037 1.32835 0.85669 0.78305 0.77780
0.80341 1.19411 1.20598 1.19774 1.17314 0.90402 0.85727 0.95447
1.44630 1.05133 1.05524 1.82915 1.22598 0.81995 0.93574 1.05835
1.22019 0.96013 0.88486 0.70669 1.22762 0.86760 1.06504 1.07811
1.93028 1.90073 1.84635 1.52100 1.93007 1.90004 1.84554 1.52084
1.20501 1.00502 0.88735 1.16696 1.17877 0.87811 0.85895 1.00964
1.86115 1.20609 1.28128 1.89206 1.23336 0.76923 1.05278 1.02152
0.93332 0.92891 0.85872 0.85371 0.98239 0.97973 0.92728 0.76382
0.87165 0.87817 0.86919 0.89467 0.86592 0.81987 0.91664 0.86272
0.91939
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.64 9.81 113.37 1.11 1.76 16
2 O -0.33 -11.67 10.28 -80.70 -0.83 -12.50 16
3 C 0.03 1.00 6.70 22.55 0.15 1.15 16
4 C -0.13 -5.53 8.66 22.33 0.19 -5.34 16
5 C -0.14 -6.22 5.09 -19.72 -0.10 -6.32 16
6 C 0.08 4.09 4.53 29.10 0.13 4.22 16
7 C -0.52 -29.62 9.09 25.60 0.23 -29.39 16
8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16
9 C 0.01 0.58 5.46 84.66 0.46 1.04 16
10 N -0.93 -56.19 13.29 21.45 0.28 -55.91 16
11 Si 0.95 45.40 29.54 68.60 2.03 47.43 16
12 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16
13 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16
14 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16
15 C 0.21 8.39 6.63 38.14 0.25 8.64 16
16 N -0.75 -27.60 5.50 -339.33 -1.87 -29.47 16
17 C 0.08 2.07 4.43 86.38 0.38 2.45 16
18 C 0.26 6.65 2.06 30.60 0.06 6.71 16
19 C -0.18 -2.43 9.38 71.98 0.68 -1.75 16
20 F -0.22 -7.21 16.92 44.97 0.76 -6.45 16
21 F -0.22 -6.71 16.92 44.97 0.76 -5.95 16
22 C -0.24 -7.75 8.30 22.48 0.19 -7.56 16
23 C 0.12 4.20 6.70 22.55 0.15 4.35 16
24 O -0.33 -9.90 10.28 -79.54 -0.82 -10.71 16
25 C 0.02 0.31 9.81 113.37 1.11 1.43 16
26 H 0.05 1.35 7.66 -2.39 -0.02 1.33 16
27 H 0.05 1.40 7.66 -2.39 -0.02 1.38 16
28 H 0.12 2.47 8.14 -2.38 -0.02 2.45 16
29 H 0.13 5.22 6.29 -2.91 -0.02 5.20 16
30 H 0.00 -0.04 8.05 -2.39 -0.02 -0.06 16
31 H 0.00 0.12 6.80 -2.39 -0.02 0.11 16
32 H 0.26 15.15 8.31 -92.71 -0.77 14.37 16
33 H 0.40 17.65 6.46 -92.71 -0.60 17.06 16
34 H 0.11 2.04 7.95 -2.39 -0.02 2.02 16
35 H 0.10 2.08 7.95 -2.39 -0.02 2.06 16
36 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16
37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16
38 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16
39 H 0.16 3.78 4.97 -2.91 -0.01 3.77 16
40 H 0.06 1.00 7.67 -2.39 -0.02 0.98 16
41 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16
42 H 0.06 0.99 7.65 -2.39 -0.02 0.98 16
Total: -1.00 -74.89 356.57 5.78 -69.11
By element:
Atomic # 1 Polarization: 22.59 SS G_CDS: 0.45 Total: 23.05 kcal
Atomic # 6 Polarization: -23.61 SS G_CDS: 5.01 Total: -18.60 kcal
Atomic # 7 Polarization: -83.79 SS G_CDS: -1.58 Total: -85.37 kcal
Atomic # 8 Polarization: -21.57 SS G_CDS: -1.65 Total: -23.21 kcal
Atomic # 9 Polarization: -13.92 SS G_CDS: 1.52 Total: -12.40 kcal
Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal
Total: -74.89 5.78 -69.11 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001162233776.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -105.219 kcal
(2) G-P(sol) polarization free energy of solvation -74.893 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.113 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.780 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.113 kcal
(6) G-S(sol) free energy of system = (1) + (5) -174.333 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds