Wall clock time and date at job start Tue Mar 31 2020 11:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47103 * 2 1 4 4 C 1.53003 * 109.46963 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46752 * 180.02562 * 4 3 2 6 6 C 1.32829 * 120.00165 * 89.99872 * 5 4 3 7 7 H 1.08005 * 120.00117 * 353.89513 * 6 5 4 8 8 C 1.46807 * 120.00025 * 173.89273 * 6 5 4 9 9 N 1.29318 * 119.99786 * 6.13553 * 8 6 5 10 10 Si 1.86794 * 120.00236 * 186.12887 * 8 6 5 11 11 H 1.48499 * 109.47157 * 59.99941 * 10 8 6 12 12 H 1.48493 * 109.47309 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47055 * 300.00481 * 10 8 6 14 14 C 1.38888 * 119.99422 * 270.26943 * 5 4 3 15 15 N 1.31716 * 119.22123 * 92.59603 * 14 5 4 16 16 C 1.33601 * 121.26884 * 179.97438 * 15 14 5 17 17 C 1.40647 * 120.99599 * 180.02562 * 16 15 14 18 18 C 1.36086 * 119.74805 * 179.97438 * 17 16 15 19 19 C 1.39342 * 121.05436 * 359.97438 * 18 17 16 20 20 C 1.36188 * 120.87510 * 0.02562 * 19 18 17 21 21 C 1.40357 * 119.64566 * 359.97438 * 20 19 18 22 22 C 1.40901 * 121.28334 * 180.02562 * 21 20 19 23 23 C 1.36344 * 118.26180 * 179.66544 * 22 21 20 24 24 N 1.48013 * 120.06432 * 180.29980 * 23 22 21 25 25 O 1.31705 * 120.00000 * 4.85119 * 24 23 22 26 26 O 1.31702 * 119.99685 * 184.84312 * 24 23 22 27 27 H 1.09003 * 109.47188 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46671 * 300.00095 * 1 2 3 29 29 H 1.09000 * 109.46987 * 59.99985 * 1 2 3 30 30 H 1.09000 * 109.47116 * 239.99751 * 2 1 3 31 31 H 1.09000 * 109.46987 * 120.00014 * 2 1 3 32 32 H 1.09000 * 109.46824 * 60.00002 * 3 2 1 33 33 H 1.09000 * 109.47211 * 299.99877 * 3 2 1 34 34 H 1.09000 * 109.47484 * 59.99610 * 4 3 2 35 35 H 1.09000 * 109.46758 * 299.99789 * 4 3 2 36 36 H 0.96996 * 120.00136 * 174.99738 * 9 8 6 37 37 H 1.07997 * 120.12743 * 359.97438 * 17 16 15 38 38 H 1.07998 * 119.47416 * 179.97438 * 18 17 16 39 39 H 1.07999 * 119.56500 * 179.97438 * 19 18 17 40 40 H 1.08005 * 120.17820 * 179.97438 * 20 19 18 41 41 H 1.07996 * 120.86960 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2802 3.4493 1.1506 7 1 4.0083 2.9771 2.0831 8 6 4.8949 4.7824 1.1547 9 7 5.1116 5.3979 0.0382 10 14 5.3640 5.5897 2.7725 11 1 6.3508 4.7374 3.4832 12 1 5.9617 6.9226 2.5057 13 1 4.1517 5.7510 3.6151 14 6 4.2839 3.4810 -1.2026 15 7 3.3208 4.2104 -1.7272 16 6 3.4935 4.8603 -2.8817 17 6 2.4613 5.6381 -3.4364 18 6 2.6650 6.2898 -4.6136 19 6 3.8840 6.2009 -5.2829 20 6 4.9066 5.4575 -4.7766 21 6 4.7325 4.7715 -3.5645 22 6 5.7673 3.9930 -3.0093 23 6 5.5336 3.3583 -1.8254 24 7 6.5949 2.5355 -1.2030 25 8 7.7959 2.4924 -1.7419 26 8 6.3383 1.8466 -0.1103 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.9331 0.9287 -0.8908 35 1 3.9337 0.9285 0.8891 36 1 5.4501 6.3069 0.0432 37 1 1.5107 5.7178 -2.9302 38 1 1.8693 6.8855 -5.0358 39 1 4.0193 6.7278 -6.2158 40 1 5.8466 5.3961 -5.3050 41 1 6.7226 3.9061 -3.5054 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132747.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:52 Heat of formation + Delta-G solvation = 102.620181 kcal Electronic energy + Delta-G solvation = -27117.740166 eV Core-core repulsion = 23389.041526 eV Total energy + Delta-G solvation = -3728.698640 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -40.13564 -38.25977 -36.32482 -35.41468 -34.67869 -33.09303 -32.43709 -31.73012 -29.67449 -29.26727 -28.64871 -25.52918 -24.91933 -23.71165 -21.78658 -21.63539 -21.20239 -20.77066 -19.20367 -17.33115 -16.94928 -16.43288 -16.01950 -15.41472 -15.18089 -14.86425 -14.59086 -14.23744 -13.97997 -13.74839 -13.52345 -13.09119 -12.93299 -12.83891 -12.58211 -12.44317 -12.30217 -11.87053 -11.78606 -11.41265 -11.16476 -11.12341 -10.99471 -10.85508 -10.80097 -10.75028 -10.33647 -10.18474 -9.61262 -9.13268 -9.04223 -8.84543 -8.60666 -8.33701 -8.13468 -7.61090 -7.26499 -3.61952 0.41250 1.35627 2.01337 2.65157 2.74631 2.76580 2.97224 3.30397 3.45664 3.68328 3.81758 3.91589 4.90893 5.05204 5.11567 5.26140 5.37952 5.39968 5.47145 5.53094 5.69812 5.78504 5.84414 5.87311 5.90948 5.93099 5.95049 5.99514 6.06808 6.12817 6.23373 6.28872 6.45723 6.49888 6.57996 6.63040 6.75056 6.84165 7.04833 7.15523 7.24088 7.35564 7.56835 8.00707 8.28475 8.46400 8.83804 9.29710 9.35041 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008812 B = 0.006790 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.544360 B = 4122.576436 C = 5102.849697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.141 4.141 4 C 0.130 3.870 5 N -0.421 5.421 6 C -0.013 4.013 7 H 0.143 0.857 8 C -0.048 4.048 9 N -0.700 5.700 10 Si 0.959 3.041 11 H -0.256 1.256 12 H -0.268 1.268 13 H -0.259 1.259 14 C 0.435 3.565 15 N -0.449 5.449 16 C 0.092 3.908 17 C -0.070 4.070 18 C -0.152 4.152 19 C -0.121 4.121 20 C -0.112 4.112 21 C -0.063 4.063 22 C -0.113 4.113 23 C 0.019 3.981 24 N 0.003 4.997 25 O -0.441 6.441 26 O -0.352 6.352 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.310 0.690 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.447 1.033 0.317 10.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.007 3.993 5 N -0.124 5.124 6 C -0.158 4.158 7 H 0.160 0.840 8 C -0.267 4.267 9 N -0.339 5.339 10 Si 0.781 3.219 11 H -0.180 1.180 12 H -0.192 1.192 13 H -0.183 1.183 14 C 0.186 3.814 15 N -0.161 5.161 16 C -0.034 4.034 17 C -0.089 4.089 18 C -0.174 4.174 19 C -0.140 4.140 20 C -0.132 4.132 21 C -0.067 4.067 22 C -0.145 4.145 23 C -0.092 4.092 24 N 0.367 4.633 25 O -0.547 6.547 26 O -0.475 6.475 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.884 1.031 0.494 10.944 hybrid contribution 1.541 0.466 0.204 1.623 sum -9.342 1.497 0.698 9.487 Atomic orbital electron populations 1.21744 0.95994 1.01101 1.01818 1.21461 0.95717 0.96831 1.02001 1.22164 0.95940 0.96579 1.03284 1.21662 0.92703 0.81189 1.03768 1.41696 1.57183 1.11003 1.02541 1.22803 1.10990 0.94030 0.87957 0.83986 1.27476 1.00316 0.97420 1.01494 1.68633 1.23475 1.13124 1.28662 0.85339 0.80105 0.78802 0.77649 1.17992 1.19195 1.18301 1.16975 0.86504 0.91222 0.86690 1.67640 1.30893 1.07378 1.10230 1.18203 0.93185 1.01165 0.90880 1.20548 0.97547 0.95615 0.95194 1.20455 0.97555 1.02523 0.96879 1.20607 0.93722 0.99933 0.99705 1.20756 0.98879 0.98273 0.95289 1.18341 0.93768 0.98584 0.96047 1.20286 0.99628 1.00306 0.94292 1.20495 0.90247 1.03034 0.95422 1.48662 1.01994 1.08659 1.03983 1.95973 1.05790 1.82109 1.70831 1.95889 1.89202 1.48615 1.13787 0.93111 0.92824 0.92810 0.92108 0.91932 0.91381 0.91209 0.91092 0.89433 0.87531 0.86304 0.86945 0.87073 0.86608 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 2 C -0.12 -1.45 5.93 -26.73 -0.16 -1.61 16 3 C -0.14 -2.05 5.54 -26.73 -0.15 -2.19 16 4 C 0.13 2.31 4.31 -4.04 -0.02 2.29 16 5 N -0.42 -8.94 1.15 -113.42 -0.13 -9.07 16 6 C -0.01 -0.27 9.14 -13.66 -0.12 -0.40 16 7 H 0.14 2.34 7.94 -52.48 -0.42 1.92 16 8 C -0.05 -0.99 5.61 -15.15 -0.09 -1.08 16 9 N -0.70 -16.05 9.78 56.00 0.55 -15.50 16 10 Si 0.96 16.07 29.65 -169.99 -5.04 11.03 16 11 H -0.26 -4.44 7.11 56.52 0.40 -4.04 16 12 H -0.27 -4.57 7.11 56.52 0.40 -4.17 16 13 H -0.26 -3.97 7.11 56.52 0.40 -3.56 16 14 C 0.43 10.18 3.55 -155.32 -0.55 9.63 16 15 N -0.45 -10.02 9.98 -10.16 -0.10 -10.12 16 16 C 0.09 1.94 6.61 -84.85 -0.56 1.38 16 17 C -0.07 -1.25 9.98 -39.45 -0.39 -1.64 16 18 C -0.15 -2.36 9.94 -39.94 -0.40 -2.76 16 19 C -0.12 -1.88 9.96 -39.91 -0.40 -2.28 16 20 C -0.11 -2.00 9.77 -39.52 -0.39 -2.39 16 21 C -0.06 -1.35 5.75 -106.75 -0.61 -1.97 16 22 C -0.11 -2.72 9.39 -39.26 -0.37 -3.09 16 23 C 0.02 0.50 5.93 -79.91 -0.47 0.02 16 24 N 0.00 0.08 4.98 33.98 0.17 0.25 16 25 O -0.44 -14.09 19.17 -31.57 -0.61 -14.70 16 26 O -0.35 -10.18 16.08 -31.57 -0.51 -10.69 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.37 8.05 -51.93 -0.42 0.95 16 35 H 0.09 1.44 8.03 -51.93 -0.42 1.02 16 36 H 0.31 6.68 8.27 -40.82 -0.34 6.35 16 37 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.12 1.84 8.06 -52.48 -0.42 1.41 16 41 H 0.13 3.14 7.61 -52.49 -0.40 2.74 16 LS Contribution 352.57 15.07 5.31 5.31 Total: -1.00 -32.49 352.57 -10.10 -42.59 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.44 Total: 8.16 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -4.31 Total: -7.25 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.49 Total: -34.44 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -1.11 Total: -25.39 kcal Atomic # 14 Polarization: 16.07 SS G_CDS: -5.04 Total: 11.03 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.49 -10.10 -42.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132747.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.208 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds