Wall clock time and date at job start Tue Mar 31 2020 11:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47103 * 2 1 4 4 C 1.53003 * 109.46963 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46752 * 180.02562 * 4 3 2 6 6 C 1.32829 * 120.00165 * 89.99872 * 5 4 3 7 7 H 1.08005 * 120.00117 * 353.89513 * 6 5 4 8 8 C 1.46807 * 120.00025 * 173.89273 * 6 5 4 9 9 N 1.29318 * 119.99786 * 6.13553 * 8 6 5 10 10 Si 1.86794 * 120.00236 * 186.12887 * 8 6 5 11 11 H 1.48499 * 109.47157 * 59.99941 * 10 8 6 12 12 H 1.48493 * 109.47309 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47055 * 300.00481 * 10 8 6 14 14 C 1.38888 * 119.99422 * 270.26943 * 5 4 3 15 15 N 1.31716 * 119.22123 * 92.59603 * 14 5 4 16 16 C 1.33601 * 121.26884 * 179.97438 * 15 14 5 17 17 C 1.40647 * 120.99599 * 180.02562 * 16 15 14 18 18 C 1.36086 * 119.74805 * 179.97438 * 17 16 15 19 19 C 1.39342 * 121.05436 * 359.97438 * 18 17 16 20 20 C 1.36188 * 120.87510 * 0.02562 * 19 18 17 21 21 C 1.40357 * 119.64566 * 359.97438 * 20 19 18 22 22 C 1.40901 * 121.28334 * 180.02562 * 21 20 19 23 23 C 1.36344 * 118.26180 * 179.66544 * 22 21 20 24 24 N 1.48013 * 120.06432 * 180.29980 * 23 22 21 25 25 O 1.31705 * 120.00000 * 4.85119 * 24 23 22 26 26 O 1.31702 * 119.99685 * 184.84312 * 24 23 22 27 27 H 1.09003 * 109.47188 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46671 * 300.00095 * 1 2 3 29 29 H 1.09000 * 109.46987 * 59.99985 * 1 2 3 30 30 H 1.09000 * 109.47116 * 239.99751 * 2 1 3 31 31 H 1.09000 * 109.46987 * 120.00014 * 2 1 3 32 32 H 1.09000 * 109.46824 * 60.00002 * 3 2 1 33 33 H 1.09000 * 109.47211 * 299.99877 * 3 2 1 34 34 H 1.09000 * 109.47484 * 59.99610 * 4 3 2 35 35 H 1.09000 * 109.46758 * 299.99789 * 4 3 2 36 36 H 0.96996 * 120.00136 * 174.99738 * 9 8 6 37 37 H 1.07997 * 120.12743 * 359.97438 * 17 16 15 38 38 H 1.07998 * 119.47416 * 179.97438 * 18 17 16 39 39 H 1.07999 * 119.56500 * 179.97438 * 19 18 17 40 40 H 1.08005 * 120.17820 * 179.97438 * 20 19 18 41 41 H 1.07996 * 120.86960 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2802 3.4493 1.1506 7 1 4.0083 2.9771 2.0831 8 6 4.8949 4.7824 1.1547 9 7 5.1116 5.3979 0.0382 10 14 5.3640 5.5897 2.7725 11 1 6.3508 4.7374 3.4832 12 1 5.9617 6.9226 2.5057 13 1 4.1517 5.7510 3.6151 14 6 4.2839 3.4810 -1.2026 15 7 3.3208 4.2104 -1.7272 16 6 3.4935 4.8603 -2.8817 17 6 2.4613 5.6381 -3.4364 18 6 2.6650 6.2898 -4.6136 19 6 3.8840 6.2009 -5.2829 20 6 4.9066 5.4575 -4.7766 21 6 4.7325 4.7715 -3.5645 22 6 5.7673 3.9930 -3.0093 23 6 5.5336 3.3583 -1.8254 24 7 6.5949 2.5355 -1.2030 25 8 7.7959 2.4924 -1.7419 26 8 6.3383 1.8466 -0.1103 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.9331 0.9287 -0.8908 35 1 3.9337 0.9285 0.8891 36 1 5.4501 6.3069 0.0432 37 1 1.5107 5.7178 -2.9302 38 1 1.8693 6.8855 -5.0358 39 1 4.0193 6.7278 -6.2158 40 1 5.8466 5.3961 -5.3050 41 1 6.7226 3.9061 -3.5054 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167132747.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:49 Heat of formation + Delta-G solvation = 73.010093 kcal Electronic energy + Delta-G solvation = -27119.024156 eV Core-core repulsion = 23389.041526 eV Total energy + Delta-G solvation = -3729.982630 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -42.10187 -40.26975 -37.34658 -36.96010 -36.30711 -35.43802 -33.57146 -32.44288 -31.04234 -30.79468 -30.45743 -27.84256 -25.98831 -25.36993 -23.99269 -22.87864 -22.41593 -22.08120 -21.37861 -19.05900 -18.73814 -18.34584 -17.92054 -16.83401 -16.51974 -16.27033 -16.02452 -15.77623 -15.39434 -15.13194 -14.89411 -14.60288 -14.41863 -14.35141 -14.14763 -13.95748 -13.89695 -13.55969 -13.51484 -12.87968 -12.46453 -12.39094 -12.32969 -12.23291 -12.05792 -11.99439 -11.82175 -11.53782 -11.40595 -10.87789 -10.52652 -10.39818 -9.97367 -9.83210 -9.58693 -9.20252 -8.90938 -5.77796 -1.09839 -0.24035 0.67303 0.70223 1.03941 1.17945 1.52181 1.53159 1.73568 2.04677 2.31221 2.63777 2.83627 3.18703 3.49713 3.61518 3.67821 3.95357 4.06068 4.16778 4.22641 4.29619 4.31210 4.37247 4.44155 4.61953 4.63326 4.74420 4.75867 4.79478 4.88379 4.97850 5.06544 5.19428 5.25605 5.31444 5.36142 5.46677 5.47046 5.62649 5.74111 5.85807 6.10623 6.25392 6.42744 6.43790 7.06072 7.76927 8.83712 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008812 B = 0.006790 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.544360 B = 4122.576436 C = 5102.849697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C -0.120 4.120 4 C 0.077 3.923 5 N -0.291 5.291 6 C 0.328 3.672 7 H 0.287 0.713 8 C -0.097 4.097 9 N -0.575 5.575 10 Si 1.049 2.951 11 H -0.247 1.247 12 H -0.260 1.260 13 H -0.157 1.157 14 C 0.268 3.732 15 N -0.392 5.392 16 C -0.032 4.032 17 C -0.033 4.033 18 C -0.196 4.196 19 C -0.070 4.070 20 C -0.193 4.193 21 C 0.001 3.999 22 C -0.301 4.301 23 C 0.058 3.942 24 N -0.097 5.097 25 O -0.711 6.711 26 O -0.660 6.660 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.141 0.859 36 H 0.358 0.642 37 H 0.141 0.859 38 H 0.152 0.848 39 H 0.142 0.858 40 H 0.097 0.903 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.596 6.856 14.418 27.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.158 4.158 4 C -0.042 4.042 5 N 0.052 4.948 6 C 0.141 3.859 7 H 0.302 0.698 8 C -0.333 4.333 9 N -0.195 5.195 10 Si 0.854 3.146 11 H -0.170 1.170 12 H -0.184 1.184 13 H -0.077 1.077 14 C 0.018 3.982 15 N -0.104 5.104 16 C -0.156 4.156 17 C -0.052 4.052 18 C -0.218 4.218 19 C -0.088 4.088 20 C -0.213 4.213 21 C -0.003 4.003 22 C -0.334 4.334 23 C -0.080 4.080 24 N 0.189 4.811 25 O -0.773 6.773 26 O -0.725 6.725 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.135 0.865 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.159 0.841 36 H 0.178 0.822 37 H 0.158 0.842 38 H 0.170 0.830 39 H 0.160 0.840 40 H 0.115 0.885 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.851 6.441 14.386 27.760 hybrid contribution 3.180 -0.412 -1.436 3.514 sum -19.670 6.030 12.950 24.310 Atomic orbital electron populations 1.21717 0.93789 1.02426 1.02439 1.21460 0.97375 0.94138 1.02876 1.22078 0.88628 1.00090 1.05021 1.23078 0.97340 0.76902 1.06877 1.44358 1.31886 1.12989 1.05539 1.28357 0.74695 0.90532 0.92352 0.69824 1.31125 0.97150 0.96604 1.08426 1.68964 1.04244 1.13323 1.32959 0.84437 0.83973 0.77503 0.68698 1.17015 1.18372 1.07706 1.16790 0.89888 1.01814 0.89691 1.66930 1.28153 1.04104 1.11180 1.17990 0.94851 1.08377 0.94344 1.20661 0.96353 0.93188 0.94998 1.20670 0.98337 1.05655 0.97091 1.21004 0.92608 0.95867 0.99338 1.20762 1.00293 1.03317 0.96923 1.18403 0.92924 0.93997 0.94977 1.19183 0.99339 1.14555 1.00308 1.19470 0.87805 1.03522 0.97159 1.46989 1.01132 1.22457 1.10487 1.95572 1.12140 1.92284 1.77352 1.95309 1.90690 1.63714 1.22755 0.91833 0.90720 0.93559 0.93661 0.89311 0.86470 0.92354 0.92384 0.84068 0.82236 0.84164 0.83040 0.83979 0.88474 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 59. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 71.98 0.71 -1.17 16 2 C -0.12 -1.96 5.93 30.60 0.18 -1.77 16 3 C -0.12 -2.29 5.54 30.60 0.17 -2.12 16 4 C 0.08 2.31 4.31 86.38 0.37 2.68 16 5 N -0.29 -10.41 1.15 -512.76 -0.59 -11.00 16 6 C 0.33 7.88 9.14 86.79 0.79 8.67 16 7 H 0.29 1.29 7.94 -2.91 -0.02 1.27 16 8 C -0.10 -2.56 5.61 87.31 0.49 -2.07 16 9 N -0.58 -21.38 9.78 23.26 0.23 -21.15 16 10 Si 1.05 14.09 29.65 68.60 2.03 16.13 16 11 H -0.25 -4.11 7.11 99.48 0.71 -3.40 16 12 H -0.26 -4.30 7.11 99.48 0.71 -3.59 16 13 H -0.16 -0.50 7.11 99.48 0.71 0.20 16 14 C 0.27 12.93 3.55 133.56 0.47 13.40 16 15 N -0.39 -16.99 9.98 -186.05 -1.86 -18.85 16 16 C -0.03 -1.46 6.61 40.33 0.27 -1.19 16 17 C -0.03 -1.18 9.98 22.36 0.22 -0.95 16 18 C -0.20 -6.18 9.94 22.03 0.22 -5.96 16 19 C -0.07 -2.47 9.96 22.06 0.22 -2.25 16 20 C -0.19 -8.85 9.77 22.31 0.22 -8.63 16 21 C 0.00 0.05 5.75 -21.24 -0.12 -0.07 16 22 C -0.30 -19.81 9.39 22.48 0.21 -19.60 16 23 C 0.06 3.75 5.93 36.40 0.22 3.96 16 24 N -0.10 -7.58 4.98 -46.40 -0.23 -7.81 16 25 O -0.71 -65.29 19.17 3.51 0.07 -65.23 16 26 O -0.66 -47.43 16.08 3.51 0.06 -47.37 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 2.41 8.05 -2.39 -0.02 2.39 16 35 H 0.14 3.27 8.03 -2.39 -0.02 3.25 16 36 H 0.36 11.67 8.27 -92.71 -0.77 10.91 16 37 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 38 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 39 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 40 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 41 H 0.05 4.03 7.61 -2.91 -0.02 4.01 16 Total: -1.00 -140.37 352.57 5.39 -134.97 By element: Atomic # 1 Polarization: 36.34 SS G_CDS: 1.04 Total: 37.38 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 4.65 Total: -17.08 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -2.45 Total: -58.81 kcal Atomic # 8 Polarization: -112.72 SS G_CDS: 0.12 Total: -112.59 kcal Atomic # 14 Polarization: 14.09 SS G_CDS: 2.03 Total: 16.13 kcal Total: -140.37 5.39 -134.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132747.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.982 kcal (2) G-P(sol) polarization free energy of solvation -140.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -134.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds