Wall clock time and date at job start Tue Mar 31 2020 11:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21489 * 119.99875 * 359.97438 * 14 13 3 16 16 C 1.48249 * 120.00170 * 180.02562 * 14 13 3 17 17 N 1.31781 * 126.63860 * 179.70574 * 16 14 13 18 18 C 1.34117 * 105.61372 * 179.85628 * 17 16 14 19 19 C 1.50698 * 126.19719 * 180.14810 * 18 17 16 20 20 C 1.50702 * 109.47246 * 270.28657 * 19 18 17 21 21 C 1.38227 * 119.99564 * 269.72558 * 20 19 18 22 22 C 1.38239 * 119.99547 * 179.76873 * 21 20 19 23 23 C 1.38230 * 120.00131 * 0.50586 * 22 21 20 24 24 C 1.38243 * 119.99971 * 359.74419 * 23 22 21 25 25 C 1.38230 * 119.99741 * 0.02562 * 24 23 22 26 26 N 1.30089 * 107.60962 * 0.40954 * 18 17 16 27 27 O 1.21303 * 110.38873 * 359.73992 * 26 18 17 28 28 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 30 30 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 31 31 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 32 32 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 33 33 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 35 35 H 1.09003 * 109.47021 * 30.28448 * 19 18 17 36 36 H 1.08999 * 109.47359 * 150.27961 * 19 18 17 37 37 H 1.07999 * 120.00756 * 359.97438 * 21 20 19 38 38 H 1.08003 * 120.00165 * 180.23245 * 22 21 20 39 39 H 1.08004 * 120.00423 * 179.73185 * 23 22 21 40 40 H 1.08003 * 119.99921 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.00322 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5928 0.1354 -0.2252 11 1 6.3984 0.2005 -2.6418 12 1 6.5053 2.2671 -1.3780 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3406 2.6325 0.4326 16 6 0.0433 3.3276 2.6336 17 7 -1.1040 3.9246 2.8865 18 6 -1.0087 4.3704 4.1478 19 6 -2.0701 5.1225 4.9085 20 6 -1.8973 6.6023 4.6817 21 6 -1.0978 7.3430 5.5320 22 6 -0.9355 8.6995 5.3212 23 6 -1.5809 9.3172 4.2664 24 6 -2.3845 8.5774 3.4191 25 6 -2.5431 7.2200 3.6271 26 7 0.1681 4.0409 4.5938 27 8 0.7901 3.4414 3.7422 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8295 -0.0694 -2.9455 34 1 2.2720 2.1230 1.9978 35 1 -3.0553 4.8140 4.5586 36 1 -1.9779 4.9047 5.9725 37 1 -0.5974 6.8614 6.3590 38 1 -0.3078 9.2776 5.9833 39 1 -1.4575 10.3779 4.1042 40 1 -2.8892 9.0601 2.5952 41 1 -3.1713 6.6421 2.9655 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192279678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:30 Heat of formation + Delta-G solvation = 53.932544 kcal Electronic energy + Delta-G solvation = -25212.918863 eV Core-core repulsion = 21482.108968 eV Total energy + Delta-G solvation = -3730.809894 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.60692 -39.52596 -39.29443 -36.30479 -35.30738 -33.60555 -32.72039 -31.86479 -31.12733 -30.91878 -27.87404 -27.32173 -25.07511 -23.44010 -23.03442 -22.77271 -21.73365 -20.65780 -19.63884 -18.50618 -18.22845 -17.02081 -16.86650 -15.92704 -15.67117 -15.44814 -15.28648 -14.78221 -14.68346 -14.59410 -13.67097 -13.63678 -13.58164 -12.90556 -12.78964 -12.65756 -12.38129 -12.30823 -11.89457 -11.69508 -11.35228 -11.26295 -11.23912 -11.14782 -11.08404 -10.90364 -10.46905 -10.33990 -10.07629 -9.86276 -9.65741 -9.20918 -9.14658 -9.03934 -8.61978 -8.15882 -6.21763 -4.32193 0.72578 1.03548 1.17834 2.01552 2.51640 3.19963 3.22423 3.28050 3.30221 3.35004 3.52465 3.89718 4.23455 4.38312 4.47122 4.65980 4.77643 4.90383 5.06112 5.09378 5.10773 5.23241 5.31901 5.42570 5.53705 5.76581 5.80813 5.84743 6.21025 6.28255 6.28455 6.33197 6.33624 6.51228 6.75012 6.89907 7.00637 7.02905 7.21606 7.42214 7.56956 7.72698 7.98831 8.02257 8.32498 8.49244 8.76129 9.34751 10.83570 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019221 B = 0.002816 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.399530 B = 9939.279492 C =10442.175963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 C 0.270 3.730 4 H 0.057 0.943 5 C -0.539 4.539 6 H 0.065 0.935 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.678 5.678 14 C 0.596 3.404 15 O -0.489 6.489 16 C 0.160 3.840 17 N -0.428 5.428 18 C 0.170 3.830 19 C 0.014 3.986 20 C -0.090 4.090 21 C -0.106 4.106 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.100 4.100 26 N -0.373 5.373 27 O 0.094 5.906 28 H 0.028 0.972 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.105 0.895 32 H 0.036 0.964 33 H 0.267 0.733 34 H 0.398 0.602 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.011 11.316 14.143 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C 0.170 3.830 4 H 0.075 0.925 5 C -0.578 4.578 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.731 3.269 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.327 5.327 14 C 0.373 3.627 15 O -0.361 6.361 16 C -0.064 4.064 17 N -0.163 5.163 18 C -0.103 4.103 19 C -0.025 4.025 20 C -0.092 4.092 21 C -0.124 4.124 22 C -0.141 4.141 23 C -0.136 4.136 24 C -0.139 4.139 25 C -0.118 4.118 26 N -0.078 5.078 27 O 0.031 5.969 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.123 0.877 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.232 0.768 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.679 11.494 13.928 20.489 hybrid contribution 1.399 -0.058 0.193 1.413 sum -8.280 11.437 14.121 19.969 Atomic orbital electron populations 1.21877 0.98242 0.98640 1.01125 1.21988 0.92651 0.99284 1.02955 1.19061 0.94915 0.89406 0.79605 0.92512 1.21138 0.90098 1.39668 1.06867 0.91705 1.24866 0.98856 0.94524 0.95211 1.69869 1.35424 1.37056 1.09392 0.86459 0.84424 0.78434 0.77543 1.20031 1.21084 1.20079 1.46560 1.12796 1.53656 1.19696 1.16257 0.84362 0.80107 0.81999 1.90877 1.51308 1.58303 1.35637 1.29263 0.86804 0.98298 0.92040 1.71936 1.20198 1.11750 1.12462 1.25685 0.94202 1.00613 0.89807 1.18886 0.94943 0.89400 0.99267 1.19566 0.98981 0.93874 0.96732 1.21088 0.97779 0.94219 0.99337 1.21140 0.99912 0.94739 0.98264 1.21215 0.97099 1.00000 0.95244 1.21187 0.99062 0.94135 0.99480 1.21161 0.99175 0.94895 0.96574 1.74612 1.07669 1.12202 1.13322 1.85443 1.39772 1.53213 1.18468 0.95291 0.94634 0.92854 0.87688 0.94500 0.92288 0.76782 0.87386 0.87923 0.85864 0.85924 0.86015 0.85775 0.85416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.51 37.16 0.32 -2.65 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.10 16 3 C 0.27 6.35 2.24 -69.09 -0.16 6.19 16 4 H 0.06 1.53 7.58 -51.93 -0.39 1.13 16 5 C -0.54 -13.41 8.73 -34.44 -0.30 -13.72 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -23.46 11.28 55.43 0.63 -22.83 16 9 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 10 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 11 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 N -0.68 -13.27 5.02 -55.76 -0.28 -13.55 16 14 C 0.60 11.67 6.41 -12.14 -0.08 11.59 16 15 O -0.49 -11.02 14.23 5.38 0.08 -10.94 16 16 C 0.16 2.77 8.24 -13.82 -0.11 2.65 16 17 N -0.43 -7.26 11.55 -10.18 -0.12 -7.37 16 18 C 0.17 2.44 7.43 -156.60 -1.16 1.28 16 19 C 0.01 0.14 5.97 -29.03 -0.17 -0.03 16 20 C -0.09 -0.98 5.12 -104.63 -0.54 -1.51 16 21 C -0.11 -1.07 9.70 -39.58 -0.38 -1.46 16 22 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 23 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 24 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 25 C -0.10 -1.07 9.70 -39.58 -0.38 -1.45 16 26 N -0.37 -5.63 12.16 31.12 0.38 -5.25 16 27 O 0.09 1.48 11.15 16.76 0.19 1.66 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.03 0.73 5.65 -51.93 -0.29 0.43 16 30 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 31 H 0.11 2.65 5.94 -51.93 -0.31 2.34 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.40 6.78 8.36 -40.82 -0.34 6.44 16 35 H 0.11 0.96 8.09 -51.93 -0.42 0.54 16 36 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 39 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 40 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 41 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 353.35 15.07 5.32 5.32 Total: -1.00 -28.87 353.35 -8.31 -37.18 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.08 Total: 6.11 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -4.40 Total: -5.10 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.61 Total: -49.01 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.26 Total: -9.28 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.87 -8.31 -37.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192279678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.113 kcal (2) G-P(sol) polarization free energy of solvation -28.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds