Wall clock time and date at job start Tue Mar 31 2020 11:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21489 * 119.99875 * 359.97438 * 14 13 3 16 16 C 1.48249 * 120.00170 * 180.02562 * 14 13 3 17 17 N 1.31781 * 126.63860 * 179.70574 * 16 14 13 18 18 C 1.34117 * 105.61372 * 179.85628 * 17 16 14 19 19 C 1.50698 * 126.19719 * 180.14810 * 18 17 16 20 20 C 1.50702 * 109.47246 * 270.28657 * 19 18 17 21 21 C 1.38227 * 119.99564 * 269.72558 * 20 19 18 22 22 C 1.38239 * 119.99547 * 179.76873 * 21 20 19 23 23 C 1.38230 * 120.00131 * 0.50586 * 22 21 20 24 24 C 1.38243 * 119.99971 * 359.74419 * 23 22 21 25 25 C 1.38230 * 119.99741 * 0.02562 * 24 23 22 26 26 N 1.30089 * 107.60962 * 0.40954 * 18 17 16 27 27 O 1.21303 * 110.38873 * 359.73992 * 26 18 17 28 28 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 30 30 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 31 31 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 32 32 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 33 33 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 35 35 H 1.09003 * 109.47021 * 30.28448 * 19 18 17 36 36 H 1.08999 * 109.47359 * 150.27961 * 19 18 17 37 37 H 1.07999 * 120.00756 * 359.97438 * 21 20 19 38 38 H 1.08003 * 120.00165 * 180.23245 * 22 21 20 39 39 H 1.08004 * 120.00423 * 179.73185 * 23 22 21 40 40 H 1.08003 * 119.99921 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.00322 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5928 0.1354 -0.2252 11 1 6.3984 0.2005 -2.6418 12 1 6.5053 2.2671 -1.3780 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3406 2.6325 0.4326 16 6 0.0433 3.3276 2.6336 17 7 -1.1040 3.9246 2.8865 18 6 -1.0087 4.3704 4.1478 19 6 -2.0701 5.1225 4.9085 20 6 -1.8973 6.6023 4.6817 21 6 -1.0978 7.3430 5.5320 22 6 -0.9355 8.6995 5.3212 23 6 -1.5809 9.3172 4.2664 24 6 -2.3845 8.5774 3.4191 25 6 -2.5431 7.2200 3.6271 26 7 0.1681 4.0409 4.5938 27 8 0.7901 3.4414 3.7422 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8295 -0.0694 -2.9455 34 1 2.2720 2.1230 1.9978 35 1 -3.0553 4.8140 4.5586 36 1 -1.9779 4.9047 5.9725 37 1 -0.5974 6.8614 6.3590 38 1 -0.3078 9.2776 5.9833 39 1 -1.4575 10.3779 4.1042 40 1 -2.8892 9.0601 2.5952 41 1 -3.1713 6.6421 2.9655 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192279678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:30 Heat of formation + Delta-G solvation = 36.173582 kcal Electronic energy + Delta-G solvation = -25213.688949 eV Core-core repulsion = 21482.108968 eV Total energy + Delta-G solvation = -3731.579981 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.85725 -40.96297 -40.25258 -37.57598 -36.99725 -34.76815 -34.41299 -33.21759 -32.47780 -31.83381 -29.23069 -28.65213 -26.60486 -24.88360 -24.51844 -23.52194 -22.79997 -21.99481 -21.36102 -19.98861 -19.47524 -18.42423 -17.69784 -17.56998 -17.39581 -16.48045 -16.41467 -16.15018 -16.04978 -15.68003 -15.28739 -14.60140 -14.40309 -14.34331 -14.07777 -14.04721 -13.56132 -13.42250 -13.24965 -13.16364 -12.99478 -12.93831 -12.64498 -12.41953 -12.22698 -12.15454 -12.09132 -11.92466 -11.63942 -11.41725 -11.27802 -11.09850 -10.53558 -9.91812 -9.87643 -9.78508 -8.15699 -6.32696 -0.63434 0.26111 0.44809 0.81983 1.06258 1.50084 1.50608 1.58275 1.80839 1.92452 2.43923 2.58611 2.94399 3.08678 3.15385 3.67482 3.71649 3.90598 4.10634 4.24572 4.26867 4.31789 4.50775 4.54594 4.55714 4.56213 4.66683 4.72474 4.73995 5.03961 5.04750 5.11186 5.24659 5.28309 5.39182 5.50368 5.57290 5.58555 5.59408 5.72626 5.82177 6.04811 6.13054 6.48501 6.69132 6.82590 7.02889 7.38733 8.89442 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019221 B = 0.002816 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.399530 B = 9939.279492 C =10442.175963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.124 4.124 3 C 0.278 3.722 4 H 0.015 0.985 5 C -0.552 4.552 6 H 0.076 0.924 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.968 3.032 10 H -0.265 1.265 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.671 5.671 14 C 0.603 3.397 15 O -0.522 6.522 16 C 0.154 3.846 17 N -0.440 5.440 18 C 0.179 3.821 19 C 0.014 3.986 20 C -0.104 4.104 21 C -0.117 4.117 22 C -0.129 4.129 23 C -0.122 4.122 24 C -0.132 4.132 25 C -0.118 4.118 26 N -0.374 5.374 27 O 0.099 5.901 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.032 0.968 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.267 0.733 34 H 0.412 0.588 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.134 0.866 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.531 12.229 16.114 21.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.163 4.163 3 C 0.177 3.823 4 H 0.033 0.967 5 C -0.590 4.590 6 H 0.094 0.906 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.321 5.321 14 C 0.382 3.618 15 O -0.397 6.397 16 C -0.069 4.069 17 N -0.177 5.177 18 C -0.094 4.094 19 C -0.024 4.024 20 C -0.106 4.106 21 C -0.135 4.135 22 C -0.147 4.147 23 C -0.140 4.140 24 C -0.150 4.150 25 C -0.136 4.136 26 N -0.079 5.079 27 O 0.037 5.963 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.249 0.751 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.156 0.844 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.182 12.414 15.945 22.196 hybrid contribution 1.188 -0.240 -0.366 1.266 sum -7.994 12.174 15.580 21.327 Atomic orbital electron populations 1.21734 0.96962 0.99741 1.00246 1.21841 0.93707 0.98547 1.02155 1.18687 0.94313 0.89532 0.79816 0.96672 1.21489 0.90874 1.39412 1.07189 0.90630 1.25674 1.03058 0.94228 0.94946 1.70011 1.37100 1.37870 1.09881 0.85455 0.79301 0.78409 0.77535 1.18967 1.21307 1.19780 1.46251 1.13321 1.53508 1.19041 1.16269 0.83714 0.79442 0.82381 1.90862 1.52182 1.59427 1.37212 1.28503 0.87447 0.99195 0.91800 1.71959 1.20103 1.11805 1.13855 1.26349 0.94533 0.99604 0.88936 1.19148 0.94276 0.88857 1.00147 1.19654 0.99697 0.93986 0.97216 1.21322 0.97733 0.94783 0.99612 1.21476 0.99925 0.94737 0.98571 1.21553 0.96426 1.01192 0.94828 1.21466 0.99338 0.94000 1.00159 1.21329 0.99736 0.95610 0.96922 1.74612 1.08028 1.12307 1.12943 1.85450 1.39610 1.53280 1.17978 0.93106 0.94326 0.94860 0.90167 0.93425 0.92416 0.75122 0.86025 0.85521 0.84811 0.83844 0.83822 0.84351 0.85531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.47 8.51 71.98 0.61 -4.85 16 2 C -0.12 -5.68 5.45 30.59 0.17 -5.51 16 3 C 0.28 13.30 2.24 44.25 0.10 13.40 16 4 H 0.02 0.86 7.58 -2.38 -0.02 0.84 16 5 C -0.55 -27.42 8.73 25.60 0.22 -27.20 16 6 H 0.08 3.51 7.74 -2.91 -0.02 3.48 16 7 C 0.02 1.12 5.29 84.66 0.45 1.56 16 8 N -0.91 -49.42 11.28 21.45 0.24 -49.18 16 9 Si 0.97 40.29 29.54 68.60 2.03 42.31 16 10 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 11 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 13 N -0.67 -26.30 5.02 -448.61 -2.25 -28.55 16 14 C 0.60 23.78 6.41 86.91 0.56 24.33 16 15 O -0.52 -24.07 14.23 -3.68 -0.05 -24.12 16 16 C 0.15 5.25 8.24 87.49 0.72 5.97 16 17 N -0.44 -14.59 11.55 -303.09 -3.50 -18.09 16 18 C 0.18 4.85 7.43 138.54 1.03 5.88 16 19 C 0.01 0.26 5.97 29.10 0.17 0.44 16 20 C -0.10 -2.09 5.12 -19.87 -0.10 -2.19 16 21 C -0.12 -2.13 9.70 22.27 0.22 -1.91 16 22 C -0.13 -2.12 10.05 22.27 0.22 -1.89 16 23 C -0.12 -1.98 10.05 22.27 0.22 -1.76 16 24 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 25 C -0.12 -2.42 9.70 22.27 0.22 -2.20 16 26 N -0.37 -10.64 12.16 -58.97 -0.72 -11.36 16 27 O 0.10 2.98 11.15 70.05 0.78 3.76 16 28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.04 1.58 5.65 -2.38 -0.01 1.56 16 30 H 0.03 1.50 7.84 -2.39 -0.02 1.49 16 31 H 0.08 4.13 5.94 -2.38 -0.01 4.12 16 32 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.27 13.81 8.31 -92.70 -0.77 13.04 16 34 H 0.41 13.74 8.36 -92.71 -0.78 12.96 16 35 H 0.12 1.94 8.09 -2.39 -0.02 1.93 16 36 H 0.13 1.75 8.08 -2.39 -0.02 1.73 16 37 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 39 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 41 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -62.00 353.35 1.85 -60.14 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.29 Total: 23.19 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 5.03 Total: 1.90 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -6.23 Total: -107.18 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: 0.73 Total: -20.37 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.31 kcal Total: -62.00 1.85 -60.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192279678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.316 kcal (2) G-P(sol) polarization free energy of solvation -61.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds