Wall clock time and date at job start Tue Mar 31 2020 10:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46951 * 2 1 4 4 C 1.53001 * 109.47252 * 240.00044 * 2 1 3 5 5 C 1.50693 * 109.46780 * 119.99769 * 2 1 3 6 6 N 1.30938 * 126.44515 * 60.00124 * 5 2 1 7 7 C 1.35231 * 105.58135 * 179.97438 * 6 5 2 8 8 C 1.48403 * 126.41164 * 179.97438 * 7 6 5 9 9 O 1.21505 * 120.00012 * 0.27849 * 8 7 6 10 10 N 1.34783 * 120.00440 * 180.02562 * 8 7 6 11 11 C 1.39837 * 119.99959 * 175.12568 * 10 8 7 12 12 C 1.39316 * 119.94473 * 146.38437 * 11 10 8 13 13 C 1.38485 * 120.42515 * 179.76138 * 12 11 10 14 14 C 1.37683 * 120.32215 * 0.51285 * 13 12 11 15 15 C 1.40748 * 119.89191 * 359.74696 * 14 13 12 16 16 C 1.41407 * 120.20716 * 180.02562 * 15 14 13 17 17 H 1.08011 * 119.99549 * 151.37368 * 16 15 14 18 18 C 1.39922 * 120.00509 * 331.37344 * 16 15 14 19 19 N 1.30831 * 120.00580 * 166.56641 * 18 16 15 20 20 Si 1.86803 * 120.00015 * 346.56510 * 18 16 15 21 21 H 1.48508 * 109.46998 * 95.30460 * 20 18 16 22 22 H 1.48491 * 109.47354 * 215.30648 * 20 18 16 23 23 H 1.48501 * 109.46898 * 335.30817 * 20 18 16 24 24 C 1.38259 * 119.95383 * 326.65753 * 11 10 8 25 25 N 1.30685 * 107.18405 * 0.23234 * 7 6 5 26 26 O 1.21289 * 110.10412 * 359.59890 * 25 7 6 27 27 H 1.08995 * 109.47424 * 300.00830 * 1 2 3 28 28 H 1.09005 * 109.47076 * 60.00251 * 1 2 3 29 29 H 1.08999 * 109.47097 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46946 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47025 * 299.99780 * 3 2 1 32 32 H 1.08995 * 109.47230 * 59.99939 * 3 2 1 33 33 H 1.08998 * 109.46577 * 300.00153 * 4 2 1 34 34 H 1.09005 * 109.47321 * 59.99855 * 4 2 1 35 35 H 1.08993 * 109.46870 * 180.02562 * 4 2 1 36 36 H 0.97005 * 119.99522 * 355.12980 * 10 8 7 37 37 H 1.08003 * 119.78946 * 0.02562 * 12 11 10 38 38 H 1.07997 * 119.83836 * 180.25425 * 13 12 11 39 39 H 1.08002 * 120.05520 * 179.76052 * 14 13 12 40 40 H 0.97003 * 120.00451 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.16178 * 359.95672 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 7 1.7950 -1.9547 1.5615 7 6 2.4436 -2.1492 2.7321 8 6 2.4813 -3.4062 3.5200 9 8 1.8934 -4.3916 3.1204 10 7 3.1718 -3.4563 4.6765 11 6 3.1244 -4.6069 5.4698 12 6 4.2437 -4.9914 6.2048 13 6 4.2061 -6.1263 6.9976 14 6 3.0644 -6.8933 7.0597 15 6 1.9276 -6.5203 6.3186 16 6 0.7513 -7.3028 6.3779 17 1 -0.2131 -6.8406 6.2263 18 6 0.8365 -8.6760 6.6330 19 7 -0.2391 -9.3509 6.9480 20 14 2.4861 -9.5456 6.5236 21 1 3.0954 -9.6231 7.8758 22 1 2.2882 -10.9174 5.9906 23 1 3.3862 -8.7876 5.6178 24 6 1.9687 -5.3642 5.5193 25 7 3.0266 -1.0215 3.0424 26 8 2.8043 -0.1887 2.1892 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1393 35 1 3.1300 -0.7216 -1.2489 36 1 3.7016 -2.6942 4.9584 37 1 5.1451 -4.3983 6.1593 38 1 5.0780 -6.4134 7.5666 39 1 3.0412 -7.7797 7.6764 40 1 -0.1799 -10.3028 7.1252 41 1 1.1016 -5.0690 4.9470 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196988330.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:51 Heat of formation + Delta-G solvation = 51.543165 kcal Electronic energy + Delta-G solvation = -25246.652656 eV Core-core repulsion = 21515.739151 eV Total energy + Delta-G solvation = -3730.913506 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.90743 -39.95162 -37.86485 -37.56171 -35.65585 -34.71382 -33.29872 -32.04005 -30.36278 -28.99199 -27.89563 -27.77255 -25.63294 -25.15056 -24.47842 -22.40756 -21.12955 -20.93546 -19.69594 -18.46256 -18.21854 -17.55133 -16.96569 -16.08298 -15.81934 -15.39144 -14.89767 -14.68001 -14.59078 -14.53408 -14.20629 -13.52016 -13.12470 -12.88905 -12.78295 -12.68207 -12.61741 -12.16221 -12.15336 -12.14097 -11.90790 -11.69787 -11.52634 -11.47299 -11.29003 -11.15930 -10.79529 -10.75473 -10.28592 -10.15528 -10.03028 -9.65690 -9.29429 -9.12764 -7.72092 -7.23766 -6.92685 -4.49903 0.66527 1.49611 2.36639 2.41930 2.58842 2.70038 3.11251 3.24257 3.27606 3.36403 3.56096 3.90162 4.00761 4.30602 4.31373 4.45956 4.49453 4.83272 5.10307 5.12823 5.15529 5.28879 5.36194 5.38759 5.41067 5.47969 5.61406 5.68241 5.80921 5.84308 5.92977 6.13960 6.28463 6.46630 6.65208 6.74403 7.10100 7.17561 7.43646 7.54397 7.71065 7.84709 7.86883 7.96018 8.30144 8.37479 8.62201 8.79323 10.09509 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024434 B = 0.002857 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.654694 B = 9796.425215 C =10462.511269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.031 3.969 3 C -0.151 4.151 4 C -0.143 4.143 5 C 0.187 3.813 6 N -0.432 5.432 7 C 0.144 3.856 8 C 0.596 3.404 9 O -0.469 6.469 10 N -0.647 5.647 11 C 0.161 3.839 12 C -0.261 4.261 13 C -0.062 4.062 14 C -0.246 4.246 15 C 0.103 3.897 16 C -0.435 4.435 17 H 0.091 0.909 18 C 0.081 3.919 19 N -0.809 5.809 20 Si 0.916 3.084 21 H -0.271 1.271 22 H -0.293 1.293 23 H -0.240 1.240 24 C -0.197 4.197 25 N -0.353 5.353 26 O 0.096 5.904 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.408 0.592 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.286 0.714 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.292 19.581 -12.988 24.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 C -0.208 4.208 4 C -0.201 4.201 5 C -0.034 4.034 6 N -0.164 5.164 7 C -0.130 4.130 8 C 0.377 3.623 9 O -0.337 6.337 10 N -0.293 5.293 11 C 0.069 3.931 12 C -0.282 4.282 13 C -0.081 4.081 14 C -0.265 4.265 15 C 0.099 3.901 16 C -0.464 4.464 17 H 0.109 0.891 18 C -0.137 4.137 19 N -0.433 5.433 20 Si 0.743 3.257 21 H -0.198 1.198 22 H -0.221 1.221 23 H -0.163 1.163 24 C -0.218 4.218 25 N -0.059 5.059 26 O 0.029 5.971 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.243 0.757 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.928 18.244 -12.521 22.669 hybrid contribution 0.886 0.029 0.156 0.900 sum 5.814 18.273 -12.365 22.816 Atomic orbital electron populations 1.21959 0.90888 1.04110 1.03171 1.19324 0.97067 0.94756 0.86001 1.21984 1.02206 0.92939 1.03686 1.21955 1.01733 1.01575 0.94824 1.29025 0.91323 0.88760 0.94337 1.71992 1.20630 1.13323 1.10456 1.25768 0.97725 0.95574 0.93943 1.16354 0.81313 0.83983 0.80665 1.90928 1.42004 1.32979 1.67817 1.43132 1.48133 1.17898 1.20102 1.17446 0.95167 0.87011 0.93462 1.20024 0.96525 1.02505 1.09141 1.20346 0.96628 0.94113 0.96968 1.20991 0.95946 1.02967 1.06602 1.17584 0.92361 0.91653 0.88529 1.19516 0.94355 0.92550 1.39953 0.89069 1.26186 0.98837 0.98055 0.90648 1.69659 1.30961 1.10224 1.32470 0.86263 0.82275 0.77195 0.79965 1.19786 1.22104 1.16279 1.20972 0.96534 0.99957 1.04330 1.74918 1.19929 1.00053 1.11004 1.85270 1.51166 1.36024 1.24634 0.91832 0.90326 0.90742 0.91373 0.90354 0.91335 0.90771 0.90323 0.91892 0.75710 0.88399 0.88197 0.88198 0.90372 0.86727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.46 37.16 0.31 -0.61 16 2 C 0.03 0.22 0.99 -155.66 -0.15 0.06 16 3 C -0.15 -0.69 8.06 37.16 0.30 -0.39 16 4 C -0.14 -0.90 8.46 37.16 0.31 -0.59 16 5 C 0.19 2.11 6.59 -13.00 -0.09 2.02 16 6 N -0.43 -6.61 11.57 -9.94 -0.11 -6.73 16 7 C 0.14 2.39 8.01 -156.18 -1.25 1.14 16 8 C 0.60 11.73 7.59 -12.07 -0.09 11.64 16 9 O -0.47 -11.07 14.77 5.36 0.08 -10.99 16 10 N -0.65 -12.03 5.33 -10.60 -0.06 -12.08 16 11 C 0.16 3.54 6.27 -83.80 -0.53 3.01 16 12 C -0.26 -5.41 9.97 -39.09 -0.39 -5.80 16 13 C -0.06 -1.33 10.02 -39.69 -0.40 -1.73 16 14 C -0.25 -6.02 6.92 -38.84 -0.27 -6.29 16 15 C 0.10 2.72 5.19 -106.85 -0.55 2.16 16 16 C -0.44 -12.29 9.61 -37.75 -0.36 -12.65 16 17 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 18 C 0.08 2.21 5.47 -17.35 -0.09 2.11 16 19 N -0.81 -22.16 13.93 55.55 0.77 -21.39 16 20 Si 0.92 21.51 24.37 -169.99 -4.14 17.37 16 21 H -0.27 -6.08 6.76 56.52 0.38 -5.69 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.24 -5.81 6.49 56.52 0.37 -5.45 16 24 C -0.20 -4.96 8.39 -38.68 -0.32 -5.29 16 25 N -0.35 -5.02 11.89 30.93 0.37 -4.65 16 26 O 0.10 1.13 10.75 17.98 0.19 1.32 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.41 6.22 8.56 -40.82 -0.35 5.87 16 37 H 0.10 1.73 8.06 -52.48 -0.42 1.30 16 38 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.10 2.42 4.21 -52.49 -0.22 2.19 16 40 H 0.29 7.07 8.30 -40.82 -0.34 6.73 16 41 H 0.11 3.01 6.40 -52.49 -0.34 2.67 16 LS Contribution 347.87 15.07 5.24 5.24 Total: -1.00 -31.95 347.87 -6.40 -38.35 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.17 Total: 4.75 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -3.57 Total: -11.20 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.97 Total: -44.85 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.27 Total: -9.67 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.14 Total: 17.37 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.95 -6.40 -38.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196988330.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.889 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds