Wall clock time and date at job start Tue Mar 31 2020 11:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54790 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55161 * 3 2 1 6 6 H 1.07999 * 119.99715 * 245.60397 * 5 3 2 7 7 C 1.37879 * 120.00154 * 65.60852 * 5 3 2 8 8 N 1.31514 * 120.00263 * 196.28627 * 7 5 3 9 9 Si 1.86803 * 120.00061 * 16.28010 * 7 5 3 10 10 H 1.48491 * 109.47220 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47213 * 300.00511 * 9 7 5 12 12 H 1.48499 * 109.47015 * 60.00212 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55383 * 3 2 1 14 14 C 1.34781 * 119.99694 * 275.00048 * 13 3 2 15 15 O 1.21521 * 120.00171 * 359.97438 * 14 13 3 16 16 C 1.48059 * 119.99738 * 179.97438 * 14 13 3 17 17 C 1.40007 * 119.75772 * 359.72578 * 16 14 13 18 18 C 1.36598 * 120.57495 * 179.71400 * 17 16 14 19 19 C 1.39364 * 119.84371 * 0.60243 * 18 17 16 20 20 C 1.41221 * 120.28350 * 359.65500 * 19 18 17 21 21 C 1.38939 * 119.75799 * 180.02562 * 16 14 13 22 22 N 1.35677 * 119.04396 * 180.02562 * 20 19 18 23 23 C 1.29831 * 121.64520 * 359.97438 * 22 20 19 24 24 N 1.35847 * 123.36814 * 359.97438 * 23 22 20 25 25 C 1.46501 * 119.69453 * 179.97438 * 24 23 22 26 26 C 1.35333 * 120.61123 * 0.02562 * 24 23 22 27 27 O 1.21709 * 121.29204 * 180.02562 * 26 24 23 28 28 H 1.09006 * 109.47148 * 60.00076 * 1 2 3 29 29 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47111 * 300.00221 * 1 2 3 31 31 H 1.08998 * 109.47166 * 240.00331 * 2 1 3 32 32 H 1.09000 * 109.47249 * 120.00370 * 2 1 3 33 33 H 0.97001 * 119.99410 * 354.82986 * 8 7 5 34 34 H 0.96993 * 120.00114 * 95.00036 * 13 3 2 35 35 H 1.07999 * 119.71210 * 359.97438 * 17 16 14 36 36 H 1.07999 * 120.07305 * 180.23548 * 18 17 16 37 37 H 1.07999 * 120.28427 * 359.95173 * 21 16 14 38 38 H 1.07998 * 118.31416 * 180.02562 * 23 22 20 39 39 H 1.08993 * 109.46681 * 0.02562 * 25 24 23 40 40 H 1.08999 * 109.47039 * 120.00136 * 25 24 23 41 41 H 1.08997 * 109.47332 * 240.00014 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4446 -0.1375 6 1 4.1567 1.8041 0.6736 7 6 4.1273 0.9879 -1.2986 8 7 5.4073 0.6859 -1.3141 9 14 3.1041 0.7977 -2.8498 10 1 3.9633 0.2934 -3.9509 11 1 2.0024 -0.1666 -2.6010 12 1 2.5328 2.1144 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4476 2.6600 1.3854 15 8 -0.3368 2.6312 0.4577 16 6 0.0673 3.3174 2.6563 17 6 0.9728 3.3425 3.7238 18 6 0.6415 3.9494 4.9019 19 6 -0.6127 4.5388 5.0497 20 6 -1.5396 4.5174 3.9844 21 6 -1.1880 3.8993 2.7830 22 7 -2.7532 5.0993 4.1556 23 6 -3.0820 5.6733 5.2727 24 7 -2.2563 5.7408 6.3494 25 6 -2.7103 6.4094 7.5713 26 6 -1.0179 5.1970 6.3032 27 8 -0.2682 5.2499 7.2606 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 5.9549 0.8550 -0.5315 34 1 2.2901 2.1167 1.9977 35 1 1.9433 2.8816 3.6135 36 1 1.3477 3.9674 5.7188 37 1 -1.8855 3.8745 1.9589 38 1 -4.0625 6.1192 5.3503 39 1 -3.7237 6.7834 7.4257 40 1 -2.7007 5.6999 8.3987 41 1 -2.0445 7.2419 7.7988 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201348784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:32 Heat of formation + Delta-G solvation = -19.393085 kcal Electronic energy + Delta-G solvation = -25547.717495 eV Core-core repulsion = 21813.727963 eV Total energy + Delta-G solvation = -3733.989532 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.86603 -39.79913 -38.30139 -37.66063 -35.35276 -34.69084 -32.54952 -31.87931 -31.29836 -30.19047 -28.22857 -27.23816 -25.07747 -24.57284 -22.48902 -22.11791 -21.27705 -19.83816 -19.13677 -18.88048 -17.65473 -17.54201 -16.65454 -16.47711 -15.80665 -15.55213 -15.08111 -14.75640 -14.46416 -14.10144 -14.00518 -13.83081 -13.52404 -13.41448 -13.21088 -12.91469 -12.65136 -12.53461 -12.37185 -12.10399 -11.90637 -11.69773 -10.93638 -10.72323 -10.62396 -10.45900 -10.32509 -10.27818 -9.91726 -9.65822 -9.37960 -9.26840 -9.07566 -8.37072 -8.36423 -8.17232 -6.60871 -4.25309 0.12287 0.52118 1.90587 2.04776 2.27349 3.35214 3.37740 3.43783 3.53034 3.60073 3.76319 3.94373 3.97374 4.34559 4.39913 4.44107 4.56133 4.77488 4.88402 4.90122 5.07917 5.11206 5.14092 5.24877 5.65448 5.77077 5.88139 5.96781 6.05419 6.07964 6.13710 6.22037 6.26764 6.47348 6.66450 6.77627 6.90255 7.01202 7.30117 7.32418 7.34139 7.52686 7.59071 8.19900 8.35822 8.63646 8.85548 9.43973 10.80068 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028465 B = 0.002946 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.443923 B = 9503.251343 C =10078.856470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.246 3.754 4 H 0.044 0.956 5 C -0.618 4.618 6 H 0.062 0.938 7 C 0.040 3.960 8 N -0.897 5.897 9 Si 1.040 2.960 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.279 1.279 13 N -0.690 5.690 14 C 0.540 3.460 15 O -0.537 6.537 16 C -0.076 4.076 17 C -0.105 4.105 18 C -0.049 4.049 19 C -0.182 4.182 20 C 0.139 3.861 21 C -0.050 4.050 22 N -0.513 5.513 23 C 0.366 3.634 24 N -0.553 5.553 25 C 0.069 3.931 26 C 0.546 3.454 27 O -0.510 6.510 28 H 0.052 0.948 29 H 0.031 0.969 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.269 0.731 34 H 0.393 0.607 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.154 0.846 38 H 0.202 0.798 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.105 9.898 16.467 25.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.143 3.857 4 H 0.062 0.938 5 C -0.656 4.656 6 H 0.080 0.920 7 C -0.167 4.167 8 N -0.530 5.530 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.194 1.194 12 H -0.205 1.205 13 N -0.338 5.338 14 C 0.324 3.676 15 O -0.416 6.416 16 C -0.081 4.081 17 C -0.124 4.124 18 C -0.069 4.069 19 C -0.188 4.188 20 C 0.031 3.969 21 C -0.070 4.070 22 N -0.232 5.232 23 C 0.078 3.922 24 N -0.277 5.277 25 C -0.074 4.074 26 C 0.340 3.660 27 O -0.384 6.384 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.228 0.772 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.172 0.828 38 H 0.218 0.782 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.435 9.221 14.045 24.213 hybrid contribution 0.822 0.648 2.758 2.949 sum -16.614 9.869 16.802 25.607 Atomic orbital electron populations 1.21894 0.97325 0.99018 1.01969 1.22369 0.93854 0.99605 1.02016 1.19131 0.95983 0.88655 0.81906 0.93789 1.22077 0.89545 1.49732 1.04244 0.92002 1.25684 0.97536 0.92294 1.01187 1.70881 1.07060 1.40748 1.34309 0.84120 0.75511 0.77782 0.75853 1.20915 1.19428 1.20539 1.46243 1.14110 1.55107 1.18336 1.18157 0.83161 0.79562 0.86686 1.90748 1.50876 1.59752 1.40274 1.20440 0.94435 0.98176 0.95036 1.21174 0.99949 0.99063 0.92222 1.20656 0.94333 0.94046 0.97838 1.20663 0.97930 1.06221 0.93960 1.18656 0.88832 0.95952 0.93462 1.21010 0.95666 0.94339 0.96011 1.68594 1.18289 1.15684 1.20652 1.24819 0.95229 0.91103 0.81043 1.46561 1.15248 1.50231 1.15659 1.22089 1.01308 0.98495 0.85464 1.18475 0.80657 0.78558 0.88332 1.90864 1.51770 1.58046 1.37726 0.92915 0.94961 0.93343 0.91114 0.92985 0.92080 0.77235 0.84253 0.83994 0.82803 0.78161 0.88829 0.90201 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.53 37.15 0.32 -2.57 16 2 C -0.14 -3.07 5.28 -26.73 -0.14 -3.21 16 3 C 0.25 5.76 1.82 -69.08 -0.13 5.63 16 4 H 0.04 1.12 6.25 -51.93 -0.32 0.79 16 5 C -0.62 -16.37 9.01 -34.44 -0.31 -16.68 16 6 H 0.06 1.71 7.96 -52.49 -0.42 1.29 16 7 C 0.04 1.10 5.32 -17.82 -0.09 1.01 16 8 N -0.90 -26.41 13.70 55.43 0.76 -25.66 16 9 Si 1.04 24.75 26.27 -169.99 -4.47 20.28 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.27 -5.94 5.67 56.52 0.32 -5.62 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.69 -13.62 4.98 -55.81 -0.28 -13.90 16 14 C 0.54 10.20 6.37 -12.23 -0.08 10.12 16 15 O -0.54 -11.58 13.45 5.35 0.07 -11.51 16 16 C -0.08 -1.18 5.87 -104.95 -0.62 -1.79 16 17 C -0.11 -1.38 9.46 -39.51 -0.37 -1.76 16 18 C -0.05 -0.62 9.61 -39.75 -0.38 -1.00 16 19 C -0.18 -2.37 5.90 -104.67 -0.62 -2.99 16 20 C 0.14 1.85 6.62 -84.52 -0.56 1.29 16 21 C -0.05 -0.74 9.57 -38.81 -0.37 -1.11 16 22 N -0.51 -5.71 10.37 -12.03 -0.12 -5.84 16 23 C 0.37 2.61 11.43 -90.19 -1.03 1.58 16 24 N -0.55 -4.48 3.01 -126.21 -0.38 -4.86 16 25 C 0.07 0.28 10.15 59.85 0.61 0.89 16 26 C 0.55 6.62 7.67 -12.34 -0.09 6.53 16 27 O -0.51 -7.30 16.71 5.18 0.09 -7.21 16 28 H 0.05 1.09 7.88 -51.93 -0.41 0.68 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.96 5.63 -51.93 -0.29 0.67 16 31 H 0.07 1.62 4.74 -51.93 -0.25 1.37 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.27 7.83 8.73 -40.82 -0.36 7.48 16 34 H 0.39 6.87 6.52 -40.82 -0.27 6.60 16 35 H 0.14 1.62 6.35 -52.49 -0.33 1.29 16 36 H 0.14 1.60 7.82 -52.49 -0.41 1.19 16 37 H 0.15 2.30 7.62 -52.49 -0.40 1.90 16 38 H 0.20 0.37 7.76 -52.49 -0.41 -0.04 16 39 H 0.09 0.02 7.68 -51.93 -0.40 -0.38 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 338.47 15.07 5.10 5.10 Total: -1.00 -34.28 338.47 -7.93 -42.22 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.83 Total: 5.44 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -3.87 Total: -4.07 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.02 Total: -50.25 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.16 Total: -18.72 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -4.47 Total: 20.28 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.28 -7.93 -42.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201348784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.823 kcal (2) G-P(sol) polarization free energy of solvation -34.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds