Wall clock time and date at job start Tue Mar 31 2020 11:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54790 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55161 * 3 2 1 6 6 H 1.07999 * 119.99715 * 245.60397 * 5 3 2 7 7 C 1.37879 * 120.00154 * 65.60852 * 5 3 2 8 8 N 1.31514 * 120.00263 * 196.28627 * 7 5 3 9 9 Si 1.86803 * 120.00061 * 16.28010 * 7 5 3 10 10 H 1.48491 * 109.47220 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47213 * 300.00511 * 9 7 5 12 12 H 1.48499 * 109.47015 * 60.00212 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55383 * 3 2 1 14 14 C 1.34781 * 119.99694 * 275.00048 * 13 3 2 15 15 O 1.21521 * 120.00171 * 359.97438 * 14 13 3 16 16 C 1.48059 * 119.99738 * 179.97438 * 14 13 3 17 17 C 1.40007 * 119.75772 * 359.72578 * 16 14 13 18 18 C 1.36598 * 120.57495 * 179.71400 * 17 16 14 19 19 C 1.39364 * 119.84371 * 0.60243 * 18 17 16 20 20 C 1.41221 * 120.28350 * 359.65500 * 19 18 17 21 21 C 1.38939 * 119.75799 * 180.02562 * 16 14 13 22 22 N 1.35677 * 119.04396 * 180.02562 * 20 19 18 23 23 C 1.29831 * 121.64520 * 359.97438 * 22 20 19 24 24 N 1.35847 * 123.36814 * 359.97438 * 23 22 20 25 25 C 1.46501 * 119.69453 * 179.97438 * 24 23 22 26 26 C 1.35333 * 120.61123 * 0.02562 * 24 23 22 27 27 O 1.21709 * 121.29204 * 180.02562 * 26 24 23 28 28 H 1.09006 * 109.47148 * 60.00076 * 1 2 3 29 29 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47111 * 300.00221 * 1 2 3 31 31 H 1.08998 * 109.47166 * 240.00331 * 2 1 3 32 32 H 1.09000 * 109.47249 * 120.00370 * 2 1 3 33 33 H 0.97001 * 119.99410 * 354.82986 * 8 7 5 34 34 H 0.96993 * 120.00114 * 95.00036 * 13 3 2 35 35 H 1.07999 * 119.71210 * 359.97438 * 17 16 14 36 36 H 1.07999 * 120.07305 * 180.23548 * 18 17 16 37 37 H 1.07999 * 120.28427 * 359.95173 * 21 16 14 38 38 H 1.07998 * 118.31416 * 180.02562 * 23 22 20 39 39 H 1.08993 * 109.46681 * 0.02562 * 25 24 23 40 40 H 1.08999 * 109.47039 * 120.00136 * 25 24 23 41 41 H 1.08997 * 109.47332 * 240.00014 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4446 -0.1375 6 1 4.1567 1.8041 0.6736 7 6 4.1273 0.9879 -1.2986 8 7 5.4073 0.6859 -1.3141 9 14 3.1041 0.7977 -2.8498 10 1 3.9633 0.2934 -3.9509 11 1 2.0024 -0.1666 -2.6010 12 1 2.5328 2.1144 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4476 2.6600 1.3854 15 8 -0.3368 2.6312 0.4577 16 6 0.0673 3.3174 2.6563 17 6 0.9728 3.3425 3.7238 18 6 0.6415 3.9494 4.9019 19 6 -0.6127 4.5388 5.0497 20 6 -1.5396 4.5174 3.9844 21 6 -1.1880 3.8993 2.7830 22 7 -2.7532 5.0993 4.1556 23 6 -3.0820 5.6733 5.2727 24 7 -2.2563 5.7408 6.3494 25 6 -2.7103 6.4094 7.5713 26 6 -1.0179 5.1970 6.3032 27 8 -0.2682 5.2499 7.2606 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 5.9549 0.8550 -0.5315 34 1 2.2901 2.1167 1.9977 35 1 1.9433 2.8816 3.6135 36 1 1.3477 3.9674 5.7188 37 1 -1.8855 3.8745 1.9589 38 1 -4.0625 6.1192 5.3503 39 1 -3.7237 6.7834 7.4257 40 1 -2.7007 5.6999 8.3987 41 1 -2.0445 7.2419 7.7988 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201348784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:31 Heat of formation + Delta-G solvation = -42.647188 kcal Electronic energy + Delta-G solvation = -25548.725868 eV Core-core repulsion = 21813.727963 eV Total energy + Delta-G solvation = -3734.997906 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.72018 -41.18416 -39.40702 -38.59923 -37.10728 -35.53513 -34.49141 -33.39492 -32.50628 -31.21034 -29.32070 -28.59708 -25.95850 -25.60293 -24.25465 -23.23011 -22.60660 -21.50682 -20.48791 -19.87948 -19.35178 -18.33712 -17.76729 -17.41283 -17.35154 -16.58075 -16.43196 -15.97539 -15.72181 -15.31646 -15.06310 -14.98367 -14.69816 -14.49487 -14.43442 -14.41234 -14.05543 -13.90954 -13.64132 -13.41533 -12.94742 -12.92868 -12.68266 -12.48834 -12.29622 -11.78993 -11.56690 -11.41395 -11.14561 -11.12702 -11.09977 -10.91812 -10.48406 -10.39801 -9.86768 -9.27457 -8.80232 -6.45042 -0.88268 -0.41167 0.97152 1.25708 1.38204 1.46463 1.51525 1.70140 2.15238 2.22649 2.42130 2.83908 2.94927 3.01296 3.08036 3.49886 3.62072 3.85774 3.87722 4.04690 4.16516 4.30754 4.32505 4.40143 4.47134 4.52994 4.68326 4.76335 4.83186 4.85954 4.93333 5.05294 5.10787 5.16757 5.19427 5.29361 5.42557 5.48904 5.53959 5.59637 5.66553 6.00220 6.46840 6.51329 6.72167 6.77130 7.22457 7.33820 8.59819 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028465 B = 0.002946 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.443923 B = 9503.251343 C =10078.856470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C 0.251 3.749 4 H 0.027 0.973 5 C -0.613 4.613 6 H 0.041 0.959 7 C -0.004 4.004 8 N -0.928 5.928 9 Si 1.070 2.930 10 H -0.284 1.284 11 H -0.242 1.242 12 H -0.274 1.274 13 N -0.692 5.692 14 C 0.543 3.457 15 O -0.566 6.566 16 C -0.087 4.087 17 C -0.108 4.108 18 C -0.045 4.045 19 C -0.198 4.198 20 C 0.147 3.853 21 C -0.061 4.061 22 N -0.548 5.548 23 C 0.391 3.609 24 N -0.547 5.547 25 C 0.061 3.939 26 C 0.541 3.459 27 O -0.538 6.538 28 H 0.042 0.958 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.258 0.742 34 H 0.403 0.597 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.264 0.736 39 H 0.144 0.856 40 H 0.077 0.923 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.244 10.965 18.151 29.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.175 4.175 3 C 0.146 3.854 4 H 0.044 0.956 5 C -0.651 4.651 6 H 0.059 0.941 7 C -0.205 4.205 8 N -0.563 5.563 9 Si 0.892 3.108 10 H -0.209 1.209 11 H -0.166 1.166 12 H -0.199 1.199 13 N -0.341 5.341 14 C 0.330 3.670 15 O -0.447 6.447 16 C -0.092 4.092 17 C -0.127 4.127 18 C -0.065 4.065 19 C -0.204 4.204 20 C 0.038 3.962 21 C -0.081 4.081 22 N -0.268 5.268 23 C 0.106 3.894 24 N -0.268 5.268 25 C -0.079 4.079 26 C 0.334 3.666 27 O -0.414 6.414 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.239 0.761 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.163 0.837 38 H 0.279 0.721 39 H 0.163 0.837 40 H 0.096 0.904 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.614 10.318 15.793 27.943 hybrid contribution 1.679 0.482 2.442 3.002 sum -18.935 10.800 18.235 28.420 Atomic orbital electron populations 1.21779 0.95528 1.00497 1.01421 1.22263 0.95371 0.98137 1.01769 1.18844 0.93669 0.89841 0.83027 0.95559 1.22267 0.91326 1.48223 1.03316 0.94080 1.26809 0.97697 0.92044 1.03954 1.70983 1.08052 1.43235 1.34017 0.83743 0.75228 0.78733 0.73074 1.20939 1.16613 1.19928 1.46054 1.15018 1.55479 1.17561 1.18559 0.82197 0.78695 0.87558 1.90719 1.51549 1.60758 1.41676 1.20106 0.95547 0.99555 0.93950 1.21190 1.00027 0.99528 0.91907 1.20795 0.94625 0.93334 0.97708 1.20920 0.98130 1.06593 0.94740 1.18674 0.89764 0.95107 0.92623 1.20955 0.95286 0.95228 0.96662 1.68644 1.17355 1.17884 1.22952 1.26022 0.96315 0.87951 0.79138 1.46731 1.13865 1.48957 1.17263 1.22469 1.03914 0.97963 0.83573 1.18451 0.81935 0.78697 0.87489 1.90848 1.52993 1.59229 1.38369 0.93847 0.92389 0.93540 0.91978 0.92599 0.93267 0.76077 0.83213 0.82864 0.83723 0.72066 0.83745 0.90440 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 8.53 71.98 0.61 -4.60 16 2 C -0.14 -5.91 5.28 30.59 0.16 -5.75 16 3 C 0.25 11.78 1.82 44.25 0.08 11.86 16 4 H 0.03 1.35 6.25 -2.39 -0.01 1.34 16 5 C -0.61 -33.14 9.01 25.60 0.23 -32.91 16 6 H 0.04 2.34 7.96 -2.91 -0.02 2.32 16 7 C 0.00 -0.24 5.32 84.66 0.45 0.21 16 8 N -0.93 -55.95 13.70 21.45 0.29 -55.65 16 9 Si 1.07 49.97 26.27 68.60 1.80 51.78 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.24 -10.20 5.67 99.48 0.56 -9.64 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 13 N -0.69 -27.63 4.98 -448.77 -2.23 -29.87 16 14 C 0.54 20.77 6.37 86.85 0.55 21.32 16 15 O -0.57 -24.69 13.45 -3.78 -0.05 -24.74 16 16 C -0.09 -2.71 5.87 -20.07 -0.12 -2.83 16 17 C -0.11 -2.82 9.46 22.32 0.21 -2.61 16 18 C -0.05 -1.12 9.61 22.16 0.21 -0.91 16 19 C -0.20 -4.95 5.90 -19.90 -0.12 -5.06 16 20 C 0.15 3.76 6.62 39.61 0.26 4.02 16 21 C -0.06 -1.79 9.57 22.77 0.22 -1.58 16 22 N -0.55 -10.81 10.37 -191.96 -1.99 -12.81 16 23 C 0.39 3.89 11.43 180.20 2.06 5.95 16 24 N -0.55 -6.93 3.01 -671.11 -2.02 -8.95 16 25 C 0.06 0.24 10.15 127.77 1.30 1.54 16 26 C 0.54 12.15 7.67 86.53 0.66 12.81 16 27 O -0.54 -14.76 16.71 -4.38 -0.07 -14.83 16 28 H 0.04 1.74 7.88 -2.38 -0.02 1.72 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 1.80 5.63 -2.39 -0.01 1.79 16 31 H 0.06 2.78 4.74 -2.39 -0.01 2.76 16 32 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.26 15.58 8.73 -92.71 -0.81 14.77 16 34 H 0.40 14.29 6.52 -92.71 -0.60 13.69 16 35 H 0.15 3.48 6.35 -2.91 -0.02 3.46 16 36 H 0.15 3.36 7.82 -2.91 -0.02 3.34 16 37 H 0.15 4.43 7.62 -2.91 -0.02 4.41 16 38 H 0.26 -0.86 7.76 -2.91 -0.02 -0.88 16 39 H 0.14 -0.88 7.68 -2.39 -0.02 -0.90 16 40 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -77.43 338.47 2.81 -74.62 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.30 Total: 18.99 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 6.78 Total: 1.46 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -5.95 Total: -107.27 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.12 Total: -39.58 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 1.80 Total: 51.78 kcal Total: -77.43 2.81 -74.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201348784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.976 kcal (2) G-P(sol) polarization free energy of solvation -77.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds