Wall clock time and date at job start Tue Mar 31 2020 11:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47286 * 2 1 4 4 C 1.52998 * 109.46967 * 180.02562 * 3 2 1 5 5 O 1.42905 * 109.46822 * 180.02562 * 4 3 2 6 6 C 1.35844 * 117.00315 * 180.02562 * 5 4 3 7 7 C 1.38913 * 119.92127 * 180.02562 * 6 5 4 8 8 C 1.37843 * 120.12255 * 179.97438 * 7 6 5 9 9 C 1.39433 * 119.95600 * 0.02562 * 8 7 6 10 10 C 1.48243 * 120.07925 * 180.02562 * 9 8 7 11 11 C 1.38980 * 119.62216 * 354.58116 * 10 9 8 12 12 C 1.40810 * 118.75672 * 180.02562 * 11 10 9 13 13 C 1.41536 * 120.98327 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99801 * 331.95494 * 13 12 11 15 15 C 1.40038 * 120.00033 * 151.94754 * 13 12 11 16 16 N 1.30738 * 119.99758 * 162.25663 * 15 13 12 17 17 Si 1.86796 * 120.00303 * 342.26172 * 15 13 12 18 18 H 1.48502 * 109.47070 * 90.28707 * 17 15 13 19 19 H 1.48496 * 109.47248 * 210.28940 * 17 15 13 20 20 H 1.48499 * 109.46970 * 330.29227 * 17 15 13 21 21 C 1.41158 * 118.03618 * 359.97438 * 12 11 10 22 22 C 1.37708 * 119.08890 * 0.02562 * 21 12 11 23 23 N 1.31942 * 121.16148 * 359.71919 * 22 21 12 24 24 C 1.39627 * 119.83627 * 0.02562 * 9 8 7 25 25 F 1.35097 * 120.06166 * 179.97438 * 24 9 8 26 26 C 1.38156 * 119.87878 * 359.70672 * 24 9 8 27 27 H 1.08996 * 109.47229 * 299.99429 * 1 2 3 28 28 H 1.08996 * 109.47859 * 59.99641 * 1 2 3 29 29 H 1.09001 * 109.47258 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47160 * 240.00570 * 2 1 3 31 31 H 1.08996 * 109.47380 * 120.00589 * 2 1 3 32 32 H 1.09003 * 109.46332 * 60.00497 * 3 2 1 33 33 H 1.08996 * 109.47392 * 300.00582 * 3 2 1 34 34 H 1.08992 * 109.47755 * 299.99750 * 4 3 2 35 35 H 1.08996 * 109.47456 * 60.00627 * 4 3 2 36 36 H 1.08001 * 119.93440 * 359.97438 * 7 6 5 37 37 H 1.07991 * 120.01988 * 180.02562 * 8 7 6 38 38 H 1.07995 * 120.62199 * 0.02562 * 11 10 9 39 39 H 0.97001 * 119.99869 * 180.02562 * 16 15 13 40 40 H 1.08002 * 120.46016 * 179.97438 * 21 12 11 41 41 H 1.07997 * 119.41700 * 180.02562 * 22 21 12 42 42 H 1.07997 * 119.97707 * 180.28844 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 -0.0006 5 8 4.0463 2.7897 0.0000 6 6 5.3930 2.9678 -0.0010 7 6 5.9221 4.2522 0.0000 8 6 7.2880 4.4377 -0.0005 9 6 8.1405 3.3343 -0.0026 10 6 9.6099 3.5306 -0.0025 11 6 10.1315 4.8139 -0.1145 12 6 11.5298 4.9793 -0.1130 13 6 12.1116 6.2647 -0.2250 14 1 11.5863 7.0516 -0.7458 15 6 13.3682 6.5162 0.3396 16 7 14.0594 7.5583 -0.0417 17 14 14.0568 5.3626 1.6375 18 1 14.8493 4.2932 0.9789 19 1 14.9298 6.1258 2.5651 20 1 12.9387 4.7516 2.4000 21 6 12.3343 3.8253 0.0035 22 6 11.7272 2.5938 0.1096 23 7 10.4128 2.4784 0.1096 24 6 7.6067 2.0440 -0.0047 25 9 8.4285 0.9717 -0.0072 26 6 6.2367 1.8660 0.0014 27 1 -0.3633 0.5137 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9562 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.9337 0.9285 0.8890 35 1 3.9329 0.9288 -0.8909 36 1 5.2620 5.1070 0.0012 37 1 7.6976 5.4369 0.0008 38 1 9.4766 5.6683 -0.2010 39 1 14.9300 7.7323 0.3492 40 1 13.4112 3.9068 0.0084 41 1 12.3376 1.7075 0.1994 42 1 5.8222 0.8688 0.0045 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206107419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:33 Heat of formation + Delta-G solvation = -47.117336 kcal Electronic energy + Delta-G solvation = -24626.787405 eV Core-core repulsion = 20871.675697 eV Total energy + Delta-G solvation = -3755.111708 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.29185 -40.10417 -38.75800 -37.22805 -35.39408 -34.09392 -31.75287 -31.37729 -30.60337 -29.66522 -27.88979 -26.01764 -24.57245 -23.01749 -22.64380 -21.51439 -20.98003 -20.62480 -18.36033 -17.73074 -16.63988 -16.62709 -16.06096 -15.70367 -15.38950 -15.25876 -14.81307 -14.65317 -14.40478 -14.22485 -13.91863 -13.71106 -13.44713 -13.06250 -13.01358 -12.79657 -12.70484 -12.29165 -11.86151 -11.81820 -11.60297 -11.54324 -11.34671 -11.13514 -11.08918 -10.85588 -10.83282 -10.79134 -10.58759 -9.85891 -9.42648 -8.84742 -8.58338 -8.32077 -8.12206 -7.27887 -7.11551 -4.76499 1.14695 1.36487 2.48863 2.62633 2.98660 3.03612 3.13511 3.23397 3.80911 3.87004 4.48336 4.49574 4.50681 4.54364 4.66678 4.83767 4.86486 4.93925 4.98476 5.10083 5.15706 5.34302 5.36742 5.38224 5.38429 5.48940 5.64600 5.71266 5.80448 5.80760 5.89440 6.12079 6.16898 6.25317 6.36178 6.44039 6.52914 6.70261 6.78715 6.91481 7.06978 7.15491 7.35413 7.58491 7.85966 8.15762 8.38512 8.60127 9.29012 9.89444 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.033338 B = 0.002491 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.685938 B =11239.684023 C =11838.858070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.119 4.119 4 C 0.056 3.944 5 O -0.312 6.312 6 C 0.151 3.849 7 C -0.167 4.167 8 C -0.041 4.041 9 C -0.091 4.091 10 C 0.163 3.837 11 C -0.238 4.238 12 C 0.109 3.891 13 C -0.437 4.437 14 H 0.095 0.905 15 C 0.086 3.914 16 N -0.796 5.796 17 Si 0.918 3.082 18 H -0.266 1.266 19 H -0.289 1.289 20 H -0.248 1.248 21 C -0.291 4.291 22 C 0.122 3.878 23 N -0.557 5.557 24 C 0.169 3.831 25 F -0.111 7.111 26 C -0.258 4.258 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.136 0.864 37 H 0.146 0.854 38 H 0.113 0.887 39 H 0.289 0.711 40 H 0.111 0.889 41 H 0.128 0.872 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.951 -9.654 1.108 21.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.019 4.019 5 O -0.226 6.226 6 C 0.105 3.895 7 C -0.185 4.185 8 C -0.059 4.059 9 C -0.093 4.093 10 C 0.031 3.969 11 C -0.260 4.260 12 C 0.101 3.899 13 C -0.467 4.467 14 H 0.113 0.887 15 C -0.135 4.135 16 N -0.419 5.419 17 Si 0.744 3.256 18 H -0.192 1.192 19 H -0.217 1.217 20 H -0.171 1.171 21 C -0.314 4.314 22 C -0.033 4.033 23 N -0.272 5.272 24 C 0.148 3.852 25 F -0.089 7.089 26 C -0.278 4.278 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.154 0.846 37 H 0.163 0.837 38 H 0.131 0.869 39 H 0.099 0.901 40 H 0.129 0.871 41 H 0.145 0.855 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.250 -10.196 1.171 21.815 hybrid contribution 1.225 0.067 0.404 1.292 sum -18.025 -10.129 1.574 20.736 Atomic orbital electron populations 1.21745 0.95197 1.01850 1.02095 1.21443 0.96405 0.95670 1.02521 1.21576 0.92522 0.97740 1.03796 1.22869 0.95312 0.82069 1.01684 1.86033 1.18874 1.29107 1.88571 1.18681 0.81812 0.93432 0.95564 1.20319 0.94937 0.94651 1.08628 1.21029 0.91342 0.98926 0.94647 1.18833 0.92979 0.91495 1.06028 1.19011 0.90160 0.90073 0.97641 1.21836 0.95371 0.95668 1.13159 1.17849 0.91297 0.93220 0.87551 1.19506 1.00665 0.96235 1.30291 0.88717 1.26201 0.95342 0.95395 0.96582 1.69638 1.11253 1.25718 1.35297 0.86260 0.79694 0.79386 0.80237 1.19185 1.21680 1.17141 1.22058 0.99649 0.93864 1.15795 1.21907 0.90492 0.95843 0.95009 1.67547 1.04894 1.32309 1.22455 1.17404 0.86592 0.83619 0.97574 1.91570 1.71820 1.52898 1.92622 1.21039 0.92488 0.99422 1.14812 0.92545 0.92533 0.92500 0.91619 0.91621 0.90761 0.90759 0.91910 0.91893 0.84633 0.83654 0.86928 0.90061 0.87115 0.85474 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.15 0.37 -0.42 16 2 C -0.12 -0.72 5.93 -26.73 -0.16 -0.88 16 3 C -0.12 -0.86 5.58 -26.73 -0.15 -1.01 16 4 C 0.06 0.51 4.74 37.16 0.18 0.69 16 5 O -0.31 -3.83 10.13 -19.25 -0.20 -4.02 16 6 C 0.15 2.10 6.69 -39.13 -0.26 1.84 16 7 C -0.17 -2.31 9.97 -39.48 -0.39 -2.70 16 8 C -0.04 -0.64 9.40 -39.28 -0.37 -1.01 16 9 C -0.09 -1.75 5.88 -104.82 -0.62 -2.36 16 10 C 0.16 3.67 6.72 -83.05 -0.56 3.11 16 11 C -0.24 -5.49 9.24 -38.34 -0.35 -5.85 16 12 C 0.11 2.73 5.17 -106.56 -0.55 2.18 16 13 C -0.44 -11.42 9.64 -37.65 -0.36 -11.78 16 14 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 15 C 0.09 2.18 5.44 -17.34 -0.09 2.08 16 16 N -0.80 -20.33 13.92 55.55 0.77 -19.56 16 17 Si 0.92 20.33 24.54 -169.99 -4.17 16.15 16 18 H -0.27 -5.68 6.44 56.52 0.36 -5.32 16 19 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.25 -5.74 7.00 56.52 0.40 -5.34 16 21 C -0.29 -7.01 7.38 -38.67 -0.29 -7.29 16 22 C 0.12 2.79 11.15 -17.70 -0.20 2.59 16 23 N -0.56 -13.11 8.31 -9.96 -0.08 -13.19 16 24 C 0.17 3.04 7.26 -39.09 -0.28 2.76 16 25 F -0.11 -2.19 15.32 2.25 0.03 -2.16 16 26 C -0.26 -3.78 9.00 -39.41 -0.35 -4.14 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.54 7.65 -51.93 -0.40 0.15 16 35 H 0.06 0.54 7.66 -51.93 -0.40 0.15 16 36 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 37 H 0.15 2.12 6.20 -52.49 -0.33 1.80 16 38 H 0.11 2.33 6.21 -52.49 -0.33 2.01 16 39 H 0.29 6.66 8.29 -40.82 -0.34 6.32 16 40 H 0.11 2.60 4.42 -52.49 -0.23 2.37 16 41 H 0.13 2.50 8.06 -52.49 -0.42 2.07 16 42 H 0.14 1.66 6.28 -52.49 -0.33 1.33 16 LS Contribution 349.75 15.07 5.27 5.27 Total: -1.00 -28.73 349.75 -8.23 -36.96 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.41 Total: 2.75 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -4.45 Total: -22.21 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.69 Total: -32.75 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: -0.20 Total: -4.02 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.03 Total: -2.16 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.17 Total: 16.15 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.73 -8.23 -36.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206107419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.161 kcal (2) G-P(sol) polarization free energy of solvation -28.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds