Wall clock time and date at job start Tue Mar 31 2020 10:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47244 * 2 1 4 4 C 1.50696 * 109.47197 * 119.99982 * 2 1 3 5 5 C 1.38126 * 120.02774 * 296.36113 * 4 2 1 6 6 C 1.38457 * 120.05108 * 179.97438 * 5 4 2 7 7 F 1.35105 * 119.94529 * 180.02562 * 6 5 4 8 8 C 1.38496 * 120.10673 * 0.02562 * 6 5 4 9 9 C 1.38090 * 120.04906 * 359.69948 * 8 6 5 10 10 C 1.38892 * 120.02648 * 116.33953 * 4 2 1 11 11 N 1.39812 * 120.05065 * 359.97438 * 10 4 2 12 12 C 1.39781 * 119.99681 * 84.58055 * 11 10 4 13 13 C 1.38778 * 120.10744 * 4.34588 * 12 11 10 14 14 C 1.38184 * 119.99157 * 180.02562 * 13 12 11 15 15 C 1.38350 * 120.20306 * 359.97438 * 14 13 12 16 16 C 1.38177 * 120.21999 * 0.02562 * 15 14 13 17 17 C 1.38718 * 120.00241 * 0.27562 * 16 15 14 18 18 O 1.35781 * 120.10397 * 179.71900 * 17 16 15 19 19 C 1.34805 * 116.99901 * 5.54542 * 18 17 16 20 20 H 1.08000 * 119.99631 * 4.52034 * 19 18 17 21 21 C 1.38629 * 120.00104 * 184.51342 * 19 18 17 22 22 N 1.31571 * 120.00045 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99740 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46923 * 90.00304 * 23 21 19 25 25 H 1.48500 * 109.46776 * 210.00215 * 23 21 19 26 26 H 1.48498 * 109.47047 * 330.00216 * 23 21 19 27 27 H 1.09008 * 109.46762 * 299.99760 * 1 2 3 28 28 H 1.09001 * 109.47263 * 59.99533 * 1 2 3 29 29 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47109 * 239.99891 * 2 1 3 31 31 H 1.08996 * 109.47042 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46907 * 300.00607 * 3 2 1 33 33 H 1.08997 * 109.47157 * 59.99920 * 3 2 1 34 34 H 1.08000 * 119.97566 * 359.96101 * 5 4 2 35 35 H 1.07999 * 119.97384 * 179.97438 * 8 6 5 36 36 H 1.08000 * 120.02684 * 180.27548 * 9 8 6 37 37 H 0.97005 * 120.00115 * 264.58307 * 11 10 4 38 38 H 1.08002 * 120.00587 * 0.04133 * 13 12 11 39 39 H 1.08001 * 119.89329 * 179.97438 * 14 13 12 40 40 H 1.07998 * 119.88860 * 180.02562 * 15 14 13 41 41 H 1.07996 * 119.99988 * 180.02562 * 16 15 14 42 42 H 0.97003 * 120.00305 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.7621 -0.1968 2.4838 6 6 2.2230 -0.8493 3.6147 7 9 1.9570 -0.3453 4.8397 8 6 2.9562 -2.0179 3.4921 9 6 3.2240 -2.5382 2.2414 10 6 2.7671 -1.8824 1.1050 11 7 3.0410 -2.4048 -0.1626 12 6 4.1393 -1.9360 -0.8892 13 6 5.0107 -1.0185 -0.3193 14 6 6.0953 -0.5562 -1.0400 15 6 6.3167 -1.0057 -2.3296 16 6 5.4545 -1.9192 -2.9054 17 6 4.3594 -2.3843 -2.1922 18 8 3.5077 -3.2777 -2.7580 19 6 3.8441 -3.7604 -3.9709 20 1 4.7905 -3.4906 -4.4159 21 6 2.9754 -4.6031 -4.6469 22 7 1.8223 -4.9314 -4.1049 23 14 3.4419 -5.2725 -6.3273 24 1 4.1670 -6.5580 -6.1641 25 1 2.2126 -5.4959 -7.1298 26 1 4.3170 -4.2955 -7.0237 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8899 34 1 1.1911 0.7147 2.5819 35 1 3.3149 -2.5249 4.3756 36 1 3.7919 -3.4519 2.1464 37 1 2.4689 -3.0924 -0.5378 38 1 4.8413 -0.6659 0.6874 39 1 6.7722 0.1581 -0.5951 40 1 7.1663 -0.6414 -2.8881 41 1 5.6310 -2.2680 -3.9121 42 1 1.2146 -5.5213 -4.5777 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212601836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:03 Heat of formation + Delta-G solvation = -24.699915 kcal Electronic energy + Delta-G solvation = -26145.874846 eV Core-core repulsion = 22391.735231 eV Total energy + Delta-G solvation = -3754.139615 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.86557 -40.08005 -38.79413 -36.40822 -35.21530 -34.63691 -32.24316 -30.17501 -29.63932 -29.03560 -27.08994 -26.99063 -25.32388 -23.69733 -22.60276 -21.35593 -20.83120 -20.06770 -17.92176 -17.47173 -17.31906 -16.75229 -16.38270 -15.68498 -15.49549 -14.60413 -14.48960 -14.33336 -14.07495 -13.87784 -13.78754 -13.59832 -13.45299 -13.24350 -13.00538 -12.70346 -12.38230 -12.20849 -11.85343 -11.75082 -11.66409 -11.55803 -11.01123 -10.99516 -10.89227 -10.70680 -10.64816 -10.53551 -10.40685 -9.63310 -9.43496 -8.90360 -8.80644 -8.40592 -7.63197 -6.56931 -6.43286 -3.98602 1.15259 1.25462 2.28083 2.42855 3.13310 3.14460 3.18602 3.55660 3.91773 4.01192 4.25642 4.62107 4.69666 4.78582 5.06226 5.12028 5.18507 5.22333 5.33354 5.43206 5.46346 5.64648 5.71811 5.75718 5.88098 5.91191 5.92484 6.03903 6.05467 6.09537 6.18370 6.23610 6.27591 6.38508 6.46733 6.56797 6.72424 6.75786 6.86786 6.93978 7.19940 7.30319 7.46416 7.70210 7.98479 8.13899 8.35795 9.03911 9.73101 10.75153 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015560 B = 0.003938 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.053421 B = 7109.232357 C = 7546.563270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.061 4.061 3 C -0.141 4.141 4 C -0.046 4.046 5 C -0.146 4.146 6 C 0.089 3.911 7 F -0.145 7.145 8 C -0.153 4.153 9 C -0.093 4.093 10 C 0.161 3.839 11 N -0.704 5.704 12 C 0.150 3.850 13 C -0.150 4.150 14 C -0.168 4.168 15 C -0.119 4.119 16 C -0.204 4.204 17 C 0.103 3.897 18 O -0.186 6.186 19 C -0.383 4.383 20 H 0.089 0.911 21 C 0.038 3.962 22 N -0.867 5.867 23 Si 0.937 3.063 24 H -0.275 1.275 25 H -0.279 1.279 26 H -0.268 1.268 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.417 0.583 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.127 0.873 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.582 8.329 10.443 13.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.080 4.080 3 C -0.198 4.198 4 C -0.048 4.048 5 C -0.165 4.165 6 C 0.070 3.930 7 F -0.124 7.124 8 C -0.173 4.173 9 C -0.113 4.113 10 C 0.067 3.933 11 N -0.337 5.337 12 C 0.052 3.948 13 C -0.173 4.173 14 C -0.187 4.187 15 C -0.139 4.139 16 C -0.224 4.224 17 C 0.049 3.951 18 O -0.091 6.091 19 C -0.460 4.460 20 H 0.107 0.893 21 C -0.165 4.165 22 N -0.503 5.503 23 Si 0.763 3.237 24 H -0.200 1.200 25 H -0.204 1.204 26 H -0.193 1.193 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.256 0.744 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.145 0.855 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.170 8.184 10.596 13.390 hybrid contribution 0.088 -0.525 -0.749 0.919 sum 0.259 7.659 9.847 12.478 Atomic orbital electron populations 1.21821 0.94311 1.02124 1.01513 1.20141 0.95706 0.95991 0.96130 1.21824 1.01633 0.94928 1.01408 1.20191 0.95639 0.94702 0.94314 1.20822 1.03395 1.01568 0.90737 1.17654 1.00744 0.94825 0.79769 1.91473 1.92444 1.87063 1.41383 1.20968 1.01556 0.96075 0.98693 1.21472 0.98481 1.00327 0.91014 1.17388 0.96780 0.93176 0.85918 1.41577 1.31153 1.45930 1.15049 1.16971 0.90206 0.98720 0.88921 1.20177 0.96620 1.00954 0.99547 1.20369 0.99140 1.03751 0.95450 1.20592 0.99223 0.98726 0.95324 1.20939 0.97372 1.02811 1.01328 1.18893 0.92271 0.93024 0.90900 1.83872 1.42334 1.49920 1.32942 1.21224 1.04122 1.27697 0.92949 0.89343 1.25190 0.95007 0.96870 0.99415 1.70016 1.08389 1.33843 1.38074 0.85763 0.78136 0.79306 0.80538 1.20041 1.20402 1.19304 0.92962 0.92229 0.92415 0.88511 0.92209 0.92336 0.93010 0.84915 0.84895 0.84714 0.74357 0.87333 0.87806 0.87804 0.85535 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.04 37.16 0.34 -1.42 16 2 C -0.06 -0.86 3.03 -91.77 -0.28 -1.14 16 3 C -0.14 -1.74 8.97 37.16 0.33 -1.41 16 4 C -0.05 -0.65 4.80 -104.42 -0.50 -1.15 16 5 C -0.15 -1.85 8.71 -39.54 -0.34 -2.19 16 6 C 0.09 1.14 7.30 -39.41 -0.29 0.85 16 7 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 8 C -0.15 -1.88 10.02 -39.54 -0.40 -2.27 16 9 C -0.09 -1.27 9.97 -39.38 -0.39 -1.66 16 10 C 0.16 2.47 4.32 -83.72 -0.36 2.11 16 11 N -0.70 -12.72 4.30 -8.26 -0.04 -12.75 16 12 C 0.15 2.97 6.03 -83.55 -0.50 2.46 16 13 C -0.15 -2.69 9.31 -39.40 -0.37 -3.05 16 14 C -0.17 -2.90 10.04 -39.56 -0.40 -3.30 16 15 C -0.12 -2.17 10.04 -39.56 -0.40 -2.57 16 16 C -0.20 -4.34 9.14 -39.43 -0.36 -4.70 16 17 C 0.10 2.37 6.67 -38.92 -0.26 2.11 16 18 O -0.19 -4.93 9.01 0.02 0.00 -4.93 16 19 C -0.38 -10.32 9.45 30.88 0.29 -10.02 16 20 H 0.09 2.24 5.28 -52.49 -0.28 1.96 16 21 C 0.04 1.03 5.49 -17.52 -0.10 0.93 16 22 N -0.87 -24.48 13.67 55.48 0.76 -23.73 16 23 Si 0.94 20.21 29.55 -169.99 -5.02 15.19 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 27 H 0.05 0.57 7.61 -51.92 -0.40 0.17 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 1.67 6.41 -51.93 -0.33 1.33 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.55 7.19 -51.93 -0.37 0.18 16 34 H 0.13 1.46 7.10 -52.49 -0.37 1.09 16 35 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 36 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 37 H 0.42 8.23 8.20 -40.82 -0.33 7.90 16 38 H 0.11 1.81 6.99 -52.49 -0.37 1.44 16 39 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 41 H 0.13 2.71 5.70 -52.49 -0.30 2.41 16 42 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 355.02 15.07 5.35 5.35 Total: -1.00 -28.09 355.02 -8.16 -36.25 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -5.27 Total: 12.88 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -3.98 Total: -26.43 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.72 Total: -36.48 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: 0.00 Total: -4.93 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.09 -8.16 -36.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212601836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.553 kcal (2) G-P(sol) polarization free energy of solvation -28.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds