Wall clock time and date at job start Tue Mar 31 2020 10:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46856 * 2 1 4 4 O 1.42899 * 109.47397 * 240.00555 * 2 1 3 5 5 C 1.50694 * 109.47180 * 119.99717 * 2 1 3 6 6 C 1.38288 * 119.95164 * 330.00118 * 5 2 1 7 7 C 1.38514 * 120.13457 * 179.97438 * 6 5 2 8 8 F 1.35100 * 119.98113 * 180.02562 * 7 6 5 9 9 C 1.38319 * 120.03170 * 0.02627 * 7 6 5 10 10 C 1.38919 * 119.89176 * 359.97438 * 9 7 6 11 11 N 1.39590 * 120.05883 * 179.97438 * 10 9 7 12 12 C 1.38816 * 120.00576 * 333.21804 * 11 10 9 13 13 C 1.39604 * 119.83858 * 330.20804 * 12 11 10 14 14 C 1.36318 * 120.15168 * 179.71471 * 13 12 11 15 15 C 1.40897 * 119.83922 * 0.58117 * 14 13 12 16 16 C 1.41112 * 120.15210 * 179.67360 * 15 14 13 17 17 H 1.08001 * 119.99555 * 156.62888 * 16 15 14 18 18 C 1.39843 * 119.99756 * 336.62575 * 16 15 14 19 19 N 1.30910 * 120.00397 * 327.06362 * 18 16 15 20 20 Si 1.86806 * 119.99690 * 147.05950 * 18 16 15 21 21 H 1.48502 * 109.46799 * 94.98711 * 20 18 16 22 22 H 1.48494 * 109.47365 * 214.98451 * 20 18 16 23 23 H 1.48498 * 109.47316 * 334.99372 * 20 18 16 24 24 C 1.40901 * 119.69417 * 359.69645 * 15 14 13 25 25 C 1.36301 * 119.84257 * 359.97438 * 24 15 14 26 26 C 1.38079 * 119.94709 * 149.97794 * 5 2 1 27 27 H 1.08994 * 109.47350 * 299.99909 * 1 2 3 28 28 H 1.09002 * 109.47186 * 60.00283 * 1 2 3 29 29 H 1.09000 * 109.46871 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47504 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47321 * 300.00250 * 3 2 1 32 32 H 1.09002 * 109.47287 * 59.99704 * 3 2 1 33 33 H 0.96701 * 113.99635 * 299.99589 * 4 2 1 34 34 H 1.08002 * 119.93093 * 0.26279 * 6 5 2 35 35 H 1.07993 * 120.05810 * 179.97438 * 9 7 6 36 36 H 0.97007 * 119.99719 * 153.22651 * 11 10 9 37 37 H 1.08000 * 119.92382 * 0.02562 * 13 12 11 38 38 H 1.08003 * 120.07429 * 180.27609 * 14 13 12 39 39 H 0.97001 * 120.00055 * 179.97438 * 19 18 16 40 40 H 1.08010 * 120.07715 * 179.97438 * 24 15 14 41 41 H 1.07995 * 119.92689 * 179.97438 * 25 24 15 42 42 H 1.08005 * 120.01152 * 0.05195 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0323 -0.7103 1.2304 6 6 1.2841 -0.6899 2.3933 7 6 1.7420 -1.3419 3.5263 8 9 1.0083 -1.3204 4.6605 9 6 2.9500 -2.0151 3.4971 10 6 3.7026 -2.0364 2.3296 11 7 4.9224 -2.7142 2.2963 12 6 5.6552 -2.8823 3.4632 13 6 5.5674 -1.9315 4.4816 14 6 6.2797 -2.0931 5.6326 15 6 7.1154 -3.2168 5.7878 16 6 7.8611 -3.3872 6.9737 17 1 8.1899 -4.3730 7.2678 18 6 8.1742 -2.2796 7.7679 19 7 8.3858 -1.1138 7.2113 20 14 8.2904 -2.4636 9.6232 21 1 9.7054 -2.6954 10.0099 22 1 7.7956 -1.2248 10.2756 23 1 7.4630 -3.6171 10.0591 24 6 7.2036 -4.1694 4.7534 25 6 6.4805 -3.9986 3.6106 26 6 3.2387 -1.3810 1.1949 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4427 0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.7211 -1.5951 -1.2330 34 1 0.3387 -0.1683 2.4166 35 1 3.3076 -2.5233 4.3803 36 1 5.2581 -3.0677 1.4576 37 1 4.9298 -1.0684 4.3594 38 1 6.2074 -1.3591 6.4215 39 1 8.6026 -0.3454 7.7623 40 1 7.8426 -5.0329 4.8657 41 1 6.5474 -4.7276 2.8167 42 1 3.8221 -1.3957 0.2861 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216491936.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:59 Heat of formation + Delta-G solvation = -55.122051 kcal Electronic energy + Delta-G solvation = -25358.779675 eV Core-core repulsion = 21603.320857 eV Total energy + Delta-G solvation = -3755.458818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.62498 -39.98251 -38.46374 -37.01608 -35.00745 -33.38541 -32.42162 -30.23062 -29.81849 -29.25917 -28.23843 -27.35643 -24.88278 -23.14884 -22.37150 -21.08541 -20.83378 -19.84523 -17.90113 -17.45920 -16.90945 -16.22185 -15.96839 -15.62148 -15.30427 -15.21154 -15.04281 -14.77515 -14.55497 -14.05874 -13.47721 -13.04600 -12.90782 -12.79578 -12.44587 -12.39885 -12.30644 -12.19249 -12.06988 -11.91013 -11.63722 -11.43577 -11.41574 -11.22613 -11.08372 -10.94831 -10.70109 -10.19499 -9.99493 -9.88949 -9.51870 -9.05082 -8.49791 -8.08399 -7.69268 -7.06469 -6.63241 -4.28487 1.39689 1.50996 2.70281 2.93230 3.02775 3.04906 3.17113 3.80956 3.85575 3.88257 4.05111 4.40291 4.44253 4.70108 4.79177 4.91968 5.22180 5.36036 5.43137 5.49157 5.55000 5.60435 5.64253 5.71375 5.79094 5.93166 6.05389 6.07798 6.09846 6.21178 6.38073 6.54045 6.57000 6.74918 6.81123 6.94617 7.07543 7.10910 7.37989 7.45824 7.49363 7.61111 7.92479 8.04594 8.22068 8.34407 8.50971 8.76947 8.88762 9.98195 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020437 B = 0.003059 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.749680 B = 9151.571623 C = 9669.801395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.172 3.828 3 C -0.135 4.135 4 O -0.555 6.555 5 C -0.057 4.057 6 C -0.212 4.212 7 C 0.134 3.866 8 F -0.143 7.143 9 C -0.210 4.210 10 C 0.241 3.759 11 N -0.664 5.664 12 C 0.005 3.995 13 C -0.112 4.112 14 C -0.160 4.160 15 C 0.106 3.894 16 C -0.467 4.467 17 H 0.082 0.918 18 C 0.088 3.912 19 N -0.768 5.768 20 Si 0.895 3.105 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.257 1.257 24 C -0.212 4.212 25 C -0.106 4.106 26 C -0.188 4.188 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.377 0.623 34 H 0.128 0.872 35 H 0.142 0.858 36 H 0.398 0.602 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.284 0.716 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.003 2.456 -10.650 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.132 3.868 3 C -0.192 4.192 4 O -0.361 6.361 5 C -0.058 4.058 6 C -0.232 4.232 7 C 0.114 3.886 8 F -0.122 7.122 9 C -0.233 4.233 10 C 0.136 3.864 11 N -0.283 5.283 12 C -0.089 4.089 13 C -0.132 4.132 14 C -0.179 4.179 15 C 0.103 3.897 16 C -0.494 4.494 17 H 0.100 0.900 18 C -0.134 4.134 19 N -0.390 5.390 20 Si 0.718 3.282 21 H -0.195 1.195 22 H -0.198 1.198 23 H -0.181 1.181 24 C -0.232 4.232 25 C -0.127 4.127 26 C -0.210 4.210 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.225 0.775 34 H 0.146 0.854 35 H 0.160 0.840 36 H 0.233 0.767 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.586 3.282 -10.533 15.998 hybrid contribution -0.058 -0.634 0.990 1.177 sum -11.644 2.648 -9.543 15.286 Atomic orbital electron populations 1.22536 0.95200 1.02807 1.02845 1.19935 0.92394 0.92434 0.82057 1.21748 1.02475 0.92608 1.02368 1.86540 1.77354 1.29108 1.43067 1.19883 0.94120 0.96947 0.94834 1.20641 1.02741 1.07461 0.92399 1.17359 0.90204 0.98808 0.82194 1.91473 1.76436 1.94926 1.49323 1.20983 0.94552 1.06681 1.01125 1.17473 0.85303 0.90733 0.92908 1.41634 1.17823 1.59349 1.09449 1.17071 1.03823 0.98396 0.89580 1.20289 1.01360 0.96681 0.94899 1.20657 0.99341 1.00606 0.97340 1.17552 0.90087 0.90736 0.91355 1.19446 1.30432 0.94595 1.04968 0.90011 1.25920 0.91805 0.94499 1.01171 1.69960 1.28806 1.01677 1.38577 0.86527 0.79465 0.79500 0.82722 1.19456 1.19845 1.18078 1.20493 1.05548 1.02773 0.94409 1.20014 0.99742 0.95043 0.97857 1.20528 0.98413 1.03069 0.99030 0.91077 0.91641 0.91996 0.91508 0.91714 0.90928 0.77520 0.85415 0.84000 0.76712 0.88857 0.87650 0.90516 0.88601 0.89163 0.85312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 8.12 37.16 0.30 -1.16 16 2 C 0.17 1.77 1.23 -91.77 -0.11 1.66 16 3 C -0.13 -1.35 8.83 37.16 0.33 -1.02 16 4 O -0.55 -5.72 11.96 -35.23 -0.42 -6.14 16 5 C -0.06 -0.71 4.80 -104.66 -0.50 -1.21 16 6 C -0.21 -2.82 9.12 -39.46 -0.36 -3.18 16 7 C 0.13 2.14 7.30 -39.45 -0.29 1.85 16 8 F -0.14 -2.35 17.27 2.25 0.04 -2.31 16 9 C -0.21 -3.67 7.76 -39.30 -0.30 -3.97 16 10 C 0.24 3.96 6.01 -83.79 -0.50 3.45 16 11 N -0.66 -11.45 5.42 -8.31 -0.05 -11.50 16 12 C 0.00 0.10 5.98 -83.68 -0.50 -0.40 16 13 C -0.11 -2.56 7.66 -39.76 -0.30 -2.86 16 14 C -0.16 -4.02 8.74 -39.27 -0.34 -4.37 16 15 C 0.11 2.72 5.56 -106.79 -0.59 2.12 16 16 C -0.47 -12.00 8.92 -37.89 -0.34 -12.34 16 17 H 0.08 2.03 8.02 -52.49 -0.42 1.61 16 18 C 0.09 2.15 4.74 -17.34 -0.08 2.06 16 19 N -0.77 -19.32 11.91 55.54 0.66 -18.66 16 20 Si 0.89 18.01 29.66 -169.99 -5.04 12.97 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 24 C -0.21 -5.00 9.74 -39.27 -0.38 -5.38 16 25 C -0.11 -2.26 9.88 -39.77 -0.39 -2.65 16 26 C -0.19 -2.62 9.24 -39.36 -0.36 -2.99 16 27 H 0.07 0.56 6.50 -51.93 -0.34 0.22 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.38 2.76 9.04 45.56 0.41 3.18 16 34 H 0.13 1.44 6.15 -52.49 -0.32 1.11 16 35 H 0.14 2.77 6.34 -52.49 -0.33 2.43 16 36 H 0.40 5.85 8.88 -40.82 -0.36 5.49 16 37 H 0.09 2.06 6.43 -52.49 -0.34 1.72 16 38 H 0.11 2.74 6.64 -52.48 -0.35 2.39 16 39 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 40 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 41 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.13 1.67 7.48 -52.48 -0.39 1.28 16 LS Contribution 351.76 15.07 5.30 5.30 Total: -1.00 -27.31 351.76 -8.79 -36.09 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -4.54 Total: 14.63 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: -4.74 Total: -30.39 kcal Atomic # 7 Polarization: -30.77 SS G_CDS: 0.62 Total: -30.16 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.42 Total: -6.14 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.04 Total: 12.97 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.31 -8.79 -36.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216491936.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.029 kcal (2) G-P(sol) polarization free energy of solvation -27.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds