Wall clock time and date at job start Tue Mar 31 2020 10:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46856 * 2 1 4 4 O 1.42899 * 109.47397 * 240.00555 * 2 1 3 5 5 C 1.50694 * 109.47180 * 119.99717 * 2 1 3 6 6 C 1.38288 * 119.95164 * 330.00118 * 5 2 1 7 7 C 1.38514 * 120.13457 * 179.97438 * 6 5 2 8 8 F 1.35100 * 119.98113 * 180.02562 * 7 6 5 9 9 C 1.38319 * 120.03170 * 0.02627 * 7 6 5 10 10 C 1.38919 * 119.89176 * 359.97438 * 9 7 6 11 11 N 1.39590 * 120.05883 * 179.97438 * 10 9 7 12 12 C 1.38816 * 120.00576 * 333.21804 * 11 10 9 13 13 C 1.39604 * 119.83858 * 330.20804 * 12 11 10 14 14 C 1.36318 * 120.15168 * 179.71471 * 13 12 11 15 15 C 1.40897 * 119.83922 * 0.58117 * 14 13 12 16 16 C 1.41112 * 120.15210 * 179.67360 * 15 14 13 17 17 H 1.08001 * 119.99555 * 156.62888 * 16 15 14 18 18 C 1.39843 * 119.99756 * 336.62575 * 16 15 14 19 19 N 1.30910 * 120.00397 * 327.06362 * 18 16 15 20 20 Si 1.86806 * 119.99690 * 147.05950 * 18 16 15 21 21 H 1.48502 * 109.46799 * 94.98711 * 20 18 16 22 22 H 1.48494 * 109.47365 * 214.98451 * 20 18 16 23 23 H 1.48498 * 109.47316 * 334.99372 * 20 18 16 24 24 C 1.40901 * 119.69417 * 359.69645 * 15 14 13 25 25 C 1.36301 * 119.84257 * 359.97438 * 24 15 14 26 26 C 1.38079 * 119.94709 * 149.97794 * 5 2 1 27 27 H 1.08994 * 109.47350 * 299.99909 * 1 2 3 28 28 H 1.09002 * 109.47186 * 60.00283 * 1 2 3 29 29 H 1.09000 * 109.46871 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47504 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47321 * 300.00250 * 3 2 1 32 32 H 1.09002 * 109.47287 * 59.99704 * 3 2 1 33 33 H 0.96701 * 113.99635 * 299.99589 * 4 2 1 34 34 H 1.08002 * 119.93093 * 0.26279 * 6 5 2 35 35 H 1.07993 * 120.05810 * 179.97438 * 9 7 6 36 36 H 0.97007 * 119.99719 * 153.22651 * 11 10 9 37 37 H 1.08000 * 119.92382 * 0.02562 * 13 12 11 38 38 H 1.08003 * 120.07429 * 180.27609 * 14 13 12 39 39 H 0.97001 * 120.00055 * 179.97438 * 19 18 16 40 40 H 1.08010 * 120.07715 * 179.97438 * 24 15 14 41 41 H 1.07995 * 119.92689 * 179.97438 * 25 24 15 42 42 H 1.08005 * 120.01152 * 0.05195 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0323 -0.7103 1.2304 6 6 1.2841 -0.6899 2.3933 7 6 1.7420 -1.3419 3.5263 8 9 1.0083 -1.3204 4.6605 9 6 2.9500 -2.0151 3.4971 10 6 3.7026 -2.0364 2.3296 11 7 4.9224 -2.7142 2.2963 12 6 5.6552 -2.8823 3.4632 13 6 5.5674 -1.9315 4.4816 14 6 6.2797 -2.0931 5.6326 15 6 7.1154 -3.2168 5.7878 16 6 7.8611 -3.3872 6.9737 17 1 8.1899 -4.3730 7.2678 18 6 8.1742 -2.2796 7.7679 19 7 8.3858 -1.1138 7.2113 20 14 8.2904 -2.4636 9.6232 21 1 9.7054 -2.6954 10.0099 22 1 7.7956 -1.2248 10.2756 23 1 7.4630 -3.6171 10.0591 24 6 7.2036 -4.1694 4.7534 25 6 6.4805 -3.9986 3.6106 26 6 3.2387 -1.3810 1.1949 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4427 0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.7211 -1.5951 -1.2330 34 1 0.3387 -0.1683 2.4166 35 1 3.3076 -2.5233 4.3803 36 1 5.2581 -3.0677 1.4576 37 1 4.9298 -1.0684 4.3594 38 1 6.2074 -1.3591 6.4215 39 1 8.6026 -0.3454 7.7623 40 1 7.8426 -5.0329 4.8657 41 1 6.5474 -4.7276 2.8167 42 1 3.8221 -1.3957 0.2861 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216491936.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:58 Heat of formation + Delta-G solvation = -69.809231 kcal Electronic energy + Delta-G solvation = -25359.416559 eV Core-core repulsion = 21603.320857 eV Total energy + Delta-G solvation = -3756.095702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.90742 -41.18006 -39.86839 -38.30532 -36.45978 -35.00982 -33.40544 -31.71474 -31.48419 -30.62125 -29.62521 -28.15317 -26.57439 -24.33641 -23.75849 -22.76049 -22.31354 -21.00529 -19.31293 -19.02937 -18.36129 -17.32589 -17.10483 -17.09169 -16.74611 -16.57756 -16.40378 -15.80835 -15.61577 -15.49209 -15.14712 -14.56907 -14.23171 -14.06731 -13.97019 -13.72274 -13.42095 -13.28983 -13.16162 -13.04410 -12.94210 -12.87664 -12.73339 -12.56278 -12.40324 -12.34408 -11.83239 -11.76854 -11.44828 -11.22338 -11.02871 -10.83586 -9.74832 -9.60351 -9.51731 -8.84693 -8.23534 -6.16349 0.18163 0.26083 1.00142 1.07543 1.36386 1.45936 1.55591 2.17946 2.47132 2.57635 2.71119 3.21986 3.37694 3.60757 3.68272 3.99178 4.12014 4.19232 4.21237 4.30567 4.34691 4.38104 4.45807 4.78088 4.84395 4.90169 4.90797 4.93976 5.06168 5.10692 5.14006 5.15877 5.24165 5.28109 5.30870 5.34832 5.46361 5.55416 5.67075 5.82258 5.91481 6.05223 6.24517 6.49716 6.68530 6.85198 6.89942 6.92255 7.08230 8.21295 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020437 B = 0.003059 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.749680 B = 9151.571623 C = 9669.801395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.175 3.825 3 C -0.139 4.139 4 O -0.564 6.564 5 C -0.048 4.048 6 C -0.193 4.193 7 C 0.119 3.881 8 F -0.150 7.150 9 C -0.231 4.231 10 C 0.225 3.775 11 N -0.664 5.664 12 C 0.030 3.970 13 C -0.119 4.119 14 C -0.181 4.181 15 C 0.074 3.926 16 C -0.507 4.507 17 H 0.079 0.921 18 C 0.050 3.950 19 N -0.805 5.805 20 Si 0.967 3.033 21 H -0.258 1.258 22 H -0.267 1.267 23 H -0.259 1.259 24 C -0.223 4.223 25 C -0.109 4.109 26 C -0.174 4.174 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.390 0.610 34 H 0.156 0.844 35 H 0.112 0.888 36 H 0.413 0.587 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.291 0.709 40 H 0.104 0.896 41 H 0.126 0.874 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.811 2.940 -12.714 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.135 3.865 3 C -0.196 4.196 4 O -0.372 6.372 5 C -0.049 4.049 6 C -0.213 4.213 7 C 0.099 3.901 8 F -0.128 7.128 9 C -0.254 4.254 10 C 0.122 3.878 11 N -0.286 5.286 12 C -0.065 4.065 13 C -0.140 4.140 14 C -0.201 4.201 15 C 0.071 3.929 16 C -0.535 4.535 17 H 0.097 0.903 18 C -0.169 4.169 19 N -0.429 5.429 20 Si 0.787 3.213 21 H -0.183 1.183 22 H -0.191 1.191 23 H -0.183 1.183 24 C -0.243 4.243 25 C -0.130 4.130 26 C -0.196 4.196 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.240 0.760 34 H 0.174 0.826 35 H 0.130 0.870 36 H 0.251 0.749 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.144 0.856 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.426 3.761 -12.640 18.819 hybrid contribution 0.302 -0.740 1.362 1.579 sum -13.124 3.021 -11.278 17.565 Atomic orbital electron populations 1.22522 0.93246 1.03557 1.03819 1.19990 0.93749 0.92056 0.80740 1.21808 1.01597 0.92709 1.03496 1.86530 1.77675 1.30307 1.42665 1.20266 0.93175 0.95792 0.95691 1.20962 1.03422 1.05631 0.91282 1.17555 0.89987 0.99619 0.82914 1.91454 1.76443 1.95042 1.49909 1.20888 0.95905 1.07910 1.00681 1.17591 0.85131 0.91591 0.93495 1.41457 1.18127 1.60250 1.08732 1.17121 1.02446 0.97005 0.89897 1.20337 1.01221 0.97386 0.95037 1.20570 1.00795 1.00752 0.97945 1.17853 0.90899 0.91738 0.92428 1.19646 1.32360 0.95049 1.06482 0.90333 1.26698 0.90880 0.93835 1.05438 1.69981 1.30025 1.02563 1.40356 0.85439 0.79779 0.79331 0.76734 1.18268 1.19120 1.18309 1.20726 1.06067 1.02683 0.94776 1.20322 0.99001 0.95647 0.98020 1.20712 0.98739 1.01722 0.98452 0.90403 0.90462 0.91393 0.92973 0.90348 0.90193 0.75991 0.82649 0.86965 0.74936 0.88656 0.89688 0.89823 0.87791 0.85648 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 8.12 71.98 0.58 -1.56 16 2 C 0.18 2.95 1.23 -11.54 -0.01 2.93 16 3 C -0.14 -2.34 8.83 71.98 0.64 -1.70 16 4 O -0.56 -9.51 11.96 -148.98 -1.78 -11.29 16 5 C -0.05 -1.05 4.80 -19.89 -0.10 -1.15 16 6 C -0.19 -4.59 9.12 22.35 0.20 -4.39 16 7 C 0.12 3.68 7.30 22.35 0.16 3.84 16 8 F -0.15 -4.87 17.27 44.97 0.78 -4.09 16 9 C -0.23 -8.07 7.76 22.45 0.17 -7.90 16 10 C 0.22 7.12 6.01 38.25 0.23 7.35 16 11 N -0.66 -22.06 5.42 -180.21 -0.98 -23.04 16 12 C 0.03 1.27 5.98 38.70 0.23 1.50 16 13 C -0.12 -5.64 7.66 22.15 0.17 -5.47 16 14 C -0.18 -9.61 8.74 22.47 0.20 -9.41 16 15 C 0.07 3.97 5.56 -21.27 -0.12 3.85 16 16 C -0.51 -27.39 8.92 23.36 0.21 -27.18 16 17 H 0.08 4.10 8.02 -2.91 -0.02 4.08 16 18 C 0.05 2.54 4.74 85.22 0.40 2.94 16 19 N -0.81 -42.33 11.91 21.81 0.26 -42.07 16 20 Si 0.97 38.12 29.66 68.60 2.03 40.15 16 21 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 22 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 23 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 24 C -0.22 -10.71 9.74 22.47 0.22 -10.49 16 25 C -0.11 -4.60 9.88 22.15 0.22 -4.38 16 26 C -0.17 -4.41 9.24 22.41 0.21 -4.21 16 27 H 0.08 0.87 6.50 -2.39 -0.02 0.85 16 28 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.39 4.22 9.04 -74.06 -0.67 3.55 16 34 H 0.16 2.86 6.15 -2.91 -0.02 2.85 16 35 H 0.11 4.58 6.34 -2.91 -0.02 4.56 16 36 H 0.41 11.21 8.88 -92.70 -0.82 10.38 16 37 H 0.10 4.37 6.43 -2.91 -0.02 4.35 16 38 H 0.08 4.75 6.64 -2.91 -0.02 4.73 16 39 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 40 H 0.10 4.70 8.06 -2.91 -0.02 4.67 16 41 H 0.13 4.34 8.06 -2.91 -0.02 4.31 16 42 H 0.14 3.26 7.48 -2.91 -0.02 3.23 16 Total: -1.00 -61.64 351.76 3.51 -58.13 By element: Atomic # 1 Polarization: 38.05 SS G_CDS: -0.42 Total: 37.63 kcal Atomic # 6 Polarization: -59.04 SS G_CDS: 3.62 Total: -55.42 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -0.72 Total: -65.10 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -1.78 Total: -11.29 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.78 Total: -4.09 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Total: -61.64 3.51 -58.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216491936.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.677 kcal (2) G-P(sol) polarization free energy of solvation -61.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds