Wall clock time and date at job start Tue Mar 31 2020 11:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47182 * 2 1 4 4 C 1.52997 * 109.47144 * 240.00253 * 2 1 3 5 5 O 1.42902 * 109.47235 * 120.00431 * 2 1 3 6 6 C 1.35874 * 117.00403 * 62.17840 * 5 2 1 7 7 C 1.38834 * 119.93107 * 353.34167 * 6 5 2 8 8 C 1.37912 * 120.06690 * 180.28050 * 7 6 5 9 9 C 1.39377 * 119.92988 * 0.02562 * 8 7 6 10 10 C 1.48363 * 120.06567 * 179.97438 * 9 8 7 11 11 C 1.39013 * 120.41863 * 309.70941 * 10 9 8 12 12 C 1.40956 * 118.12464 * 179.75920 * 11 10 9 13 13 C 1.41372 * 120.57274 * 180.23437 * 12 11 10 14 14 H 1.08003 * 120.00229 * 144.95257 * 13 12 11 15 15 C 1.39891 * 120.00081 * 324.95772 * 13 12 11 16 16 N 1.30870 * 120.00061 * 357.78248 * 15 13 12 17 17 Si 1.86795 * 120.00249 * 177.78335 * 15 13 12 18 18 H 1.48497 * 109.47290 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47555 * 119.99826 * 17 15 13 20 20 H 1.48507 * 109.47402 * 240.00017 * 17 15 13 21 21 C 1.40811 * 118.85226 * 0.48447 * 12 11 10 22 22 N 1.31499 * 120.70273 * 359.77229 * 21 12 11 23 23 C 1.32156 * 122.07552 * 359.97438 * 22 21 12 24 24 F 1.35103 * 119.45983 * 180.02562 * 23 22 21 25 25 C 1.39384 * 119.87248 * 359.97438 * 9 8 7 26 26 C 1.37904 * 119.93090 * 359.97438 * 25 9 8 27 27 H 1.09000 * 109.46927 * 321.47543 * 1 2 3 28 28 H 1.08997 * 109.47220 * 81.48056 * 1 2 3 29 29 H 1.08999 * 109.46899 * 201.47686 * 1 2 3 30 30 H 1.08997 * 109.47447 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47105 * 300.00773 * 3 2 1 32 32 H 1.09009 * 109.46620 * 60.00139 * 3 2 1 33 33 H 1.09007 * 109.47300 * 298.06043 * 4 2 1 34 34 H 1.08995 * 109.47086 * 58.06017 * 4 2 1 35 35 H 1.09003 * 109.47338 * 178.06106 * 4 2 1 36 36 H 1.08006 * 119.96640 * 0.27292 * 7 6 5 37 37 H 1.07993 * 120.03380 * 180.02562 * 8 7 6 38 38 H 1.07999 * 120.93757 * 359.97184 * 11 10 9 39 39 H 0.96994 * 120.00348 * 180.02562 * 16 15 13 40 40 H 1.07999 * 119.64477 * 179.75338 * 21 12 11 41 41 H 1.08003 * 120.03325 * 179.97438 * 25 9 8 42 42 H 1.08001 * 119.96540 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0064 -0.6737 1.1667 6 6 1.6793 -1.9860 1.2981 7 6 0.8026 -2.5750 0.3971 8 6 0.4642 -3.9052 0.5313 9 6 1.0030 -4.6581 1.5731 10 6 0.6406 -6.0892 1.7206 11 6 -0.6928 -6.4822 1.7111 12 6 -0.9819 -7.8548 1.8497 13 6 -2.3196 -8.3122 1.8421 14 1 -2.5619 -9.2654 1.3957 15 6 -3.3295 -7.5303 2.4127 16 7 -3.0300 -6.3956 2.9920 17 14 -5.1054 -8.1056 2.3479 18 1 -5.1777 -9.4104 1.6427 19 1 -5.6267 -8.2598 3.7298 20 1 -5.9241 -7.1036 1.6190 21 6 0.0844 -8.7620 2.0012 22 7 1.3295 -8.3392 2.0091 23 6 1.6375 -7.0609 1.8766 24 9 2.9351 -6.6850 1.8917 25 6 1.8830 -4.0640 2.4761 26 6 2.2184 -2.7337 2.3362 27 1 -0.3633 0.8040 0.6401 28 1 -0.3633 0.1522 -1.0163 29 1 -0.3633 -0.9563 0.3763 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.7053 -1.7585 -1.2321 34 1 1.6486 -0.2278 -2.1388 35 1 3.1295 -0.6912 -1.2668 36 1 0.3850 -1.9908 -0.4097 37 1 -0.2175 -4.3629 -0.1701 38 1 -1.4846 -5.7567 1.5973 39 1 -3.7301 -5.8536 3.3880 40 1 -0.1227 -9.8160 2.1124 41 1 2.3017 -4.6450 3.2846 42 1 2.9005 -2.2730 3.0353 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235927000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:37 Heat of formation + Delta-G solvation = -23.165257 kcal Electronic energy + Delta-G solvation = -25727.790925 eV Core-core repulsion = 21973.717857 eV Total energy + Delta-G solvation = -3754.073068 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.62800 -40.64755 -38.58900 -37.34022 -34.21871 -34.07784 -31.96818 -30.82077 -30.25408 -28.30470 -27.57486 -27.16851 -25.50998 -23.14831 -22.69341 -21.52114 -20.87314 -20.13608 -17.63387 -17.19633 -16.69383 -16.28445 -15.87158 -15.40141 -15.30890 -14.92695 -14.73792 -14.39001 -13.91929 -13.86834 -13.51751 -13.29400 -12.87705 -12.70921 -12.53164 -12.33838 -12.15804 -12.11502 -12.01618 -11.99567 -11.84458 -11.63039 -11.54371 -11.30958 -11.20210 -10.77630 -10.63430 -10.60644 -10.29644 -10.03226 -9.51392 -8.65494 -8.60202 -8.45718 -7.77081 -7.26118 -6.90921 -4.65647 1.56542 1.71210 2.40358 2.68235 2.97552 3.00485 3.03217 3.25825 3.79339 4.11753 4.44418 4.56678 4.61550 4.76140 5.01923 5.09515 5.16297 5.31620 5.32066 5.34175 5.37998 5.42044 5.50286 5.58465 5.61575 5.75922 5.81415 5.86519 5.99807 6.06895 6.07480 6.12412 6.36075 6.48260 6.56330 6.64804 6.68710 6.94960 6.97390 7.08472 7.12383 7.44813 7.63893 7.67172 7.75617 8.21513 8.47592 8.55774 9.16075 10.02517 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.003796 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.509172 B = 7374.375920 C = 8835.511274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.110 3.890 3 C -0.136 4.136 4 C -0.199 4.199 5 O -0.311 6.311 6 C 0.121 3.879 7 C -0.223 4.223 8 C -0.071 4.071 9 C -0.049 4.049 10 C -0.103 4.103 11 C -0.082 4.082 12 C 0.055 3.945 13 C -0.451 4.451 14 H 0.086 0.914 15 C 0.070 3.930 16 N -0.803 5.803 17 Si 0.919 3.081 18 H -0.259 1.259 19 H -0.273 1.273 20 H -0.272 1.272 21 C 0.021 3.979 22 N -0.496 5.496 23 C 0.177 3.823 24 F -0.144 7.144 25 C -0.064 4.064 26 C -0.153 4.153 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.147 0.853 37 H 0.125 0.875 38 H 0.140 0.860 39 H 0.284 0.716 40 H 0.140 0.860 41 H 0.127 0.873 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.803 12.677 -5.514 14.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.072 3.928 3 C -0.193 4.193 4 C -0.256 4.256 5 O -0.226 6.226 6 C 0.076 3.924 7 C -0.241 4.241 8 C -0.089 4.089 9 C -0.050 4.050 10 C -0.107 4.107 11 C -0.108 4.108 12 C 0.050 3.950 13 C -0.481 4.481 14 H 0.104 0.896 15 C -0.147 4.147 16 N -0.428 5.428 17 Si 0.743 3.257 18 H -0.183 1.183 19 H -0.198 1.198 20 H -0.197 1.197 21 C -0.140 4.140 22 N -0.208 5.208 23 C 0.023 3.977 24 F -0.123 7.123 25 C -0.082 4.082 26 C -0.172 4.172 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.164 0.836 37 H 0.143 0.857 38 H 0.157 0.843 39 H 0.095 0.905 40 H 0.157 0.843 41 H 0.145 0.855 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.528 12.439 -5.167 13.924 hybrid contribution -1.395 0.414 -0.098 1.458 sum 2.133 12.853 -5.265 14.053 Atomic orbital electron populations 1.22959 0.95051 1.04948 1.03101 1.21709 0.93845 0.92837 0.84435 1.21789 1.02052 0.92760 1.02732 1.22857 1.02552 1.03073 0.97090 1.86096 1.72922 1.20609 1.42925 1.18855 0.95010 0.82985 0.95504 1.21729 1.03061 0.96681 1.02657 1.21060 0.98058 0.92818 0.96967 1.18665 0.97859 0.92825 0.95666 1.19177 0.94085 0.90875 1.06560 1.21814 0.92566 0.97264 0.99119 1.18528 0.94465 0.91812 0.90146 1.19507 0.90752 1.04846 1.33012 0.89597 1.25941 1.01738 0.94009 0.92984 1.69728 1.35653 1.10722 1.26741 0.86071 0.80720 0.79927 0.78956 1.18291 1.19773 1.19736 1.22479 0.85677 0.99352 1.06447 1.66317 1.24677 1.15788 1.14011 1.17637 0.77921 0.89011 1.13157 1.91412 1.34956 1.90845 1.95119 1.21028 0.95749 0.93348 0.98085 1.20264 1.03946 0.93666 0.99300 0.91681 0.91164 0.89135 0.91652 0.90667 0.91611 0.89674 0.91232 0.91622 0.83555 0.85720 0.84263 0.90519 0.84264 0.85533 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.08 8.05 37.16 0.30 -1.78 16 2 C 0.11 1.19 1.11 -90.62 -0.10 1.09 16 3 C -0.14 -1.16 8.74 37.16 0.32 -0.84 16 4 C -0.20 -2.02 8.06 37.16 0.30 -1.72 16 5 O -0.31 -4.41 9.78 -19.34 -0.19 -4.59 16 6 C 0.12 1.90 6.08 -39.14 -0.24 1.66 16 7 C -0.22 -3.40 5.82 -39.48 -0.23 -3.63 16 8 C -0.07 -1.25 9.53 -39.28 -0.37 -1.62 16 9 C -0.05 -0.99 5.33 -104.88 -0.56 -1.55 16 10 C -0.10 -2.37 5.48 -104.75 -0.57 -2.95 16 11 C -0.08 -1.98 8.22 -38.27 -0.31 -2.30 16 12 C 0.05 1.36 5.52 -106.70 -0.59 0.77 16 13 C -0.45 -10.86 9.06 -37.77 -0.34 -11.21 16 14 H 0.09 1.96 7.85 -52.48 -0.41 1.55 16 15 C 0.07 1.63 5.37 -17.34 -0.09 1.54 16 16 N -0.80 -19.36 10.91 55.54 0.61 -18.75 16 17 Si 0.92 17.39 29.56 -169.99 -5.02 12.37 16 18 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 19 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 20 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 21 C 0.02 0.50 10.96 -16.72 -0.18 0.32 16 22 N -0.50 -12.28 10.33 -12.58 -0.13 -12.41 16 23 C 0.18 4.26 8.30 -16.72 -0.14 4.13 16 24 F -0.14 -3.31 15.91 2.25 0.04 -3.27 16 25 C -0.06 -1.18 8.86 -39.28 -0.35 -1.53 16 26 C -0.15 -2.51 9.97 -39.49 -0.39 -2.91 16 27 H 0.06 0.63 7.95 -51.93 -0.41 0.21 16 28 H 0.07 0.58 7.92 -51.93 -0.41 0.17 16 29 H 0.09 1.09 4.62 -51.93 -0.24 0.85 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.55 8.13 -51.92 -0.42 0.13 16 33 H 0.08 0.98 4.64 -51.93 -0.24 0.74 16 34 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.15 1.86 3.47 -52.48 -0.18 1.68 16 37 H 0.12 2.10 8.05 -52.49 -0.42 1.68 16 38 H 0.14 3.42 6.50 -52.49 -0.34 3.08 16 39 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 40 H 0.14 3.00 8.06 -52.49 -0.42 2.58 16 41 H 0.13 2.32 7.79 -52.48 -0.41 1.91 16 42 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -27.18 346.11 -8.20 -35.39 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.16 Total: 8.58 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -3.55 Total: -22.52 kcal Atomic # 7 Polarization: -31.64 SS G_CDS: 0.48 Total: -31.17 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.19 Total: -4.59 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.04 Total: -3.27 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.02 Total: 12.37 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.18 -8.20 -35.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235927000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.222 kcal (2) G-P(sol) polarization free energy of solvation -27.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds