Wall clock time and date at job start Tue Mar 31 2020 11:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47182 * 2 1 4 4 C 1.52997 * 109.47144 * 240.00253 * 2 1 3 5 5 O 1.42902 * 109.47235 * 120.00431 * 2 1 3 6 6 C 1.35874 * 117.00403 * 62.17840 * 5 2 1 7 7 C 1.38834 * 119.93107 * 353.34167 * 6 5 2 8 8 C 1.37912 * 120.06690 * 180.28050 * 7 6 5 9 9 C 1.39377 * 119.92988 * 0.02562 * 8 7 6 10 10 C 1.48363 * 120.06567 * 179.97438 * 9 8 7 11 11 C 1.39013 * 120.41863 * 309.70941 * 10 9 8 12 12 C 1.40956 * 118.12464 * 179.75920 * 11 10 9 13 13 C 1.41372 * 120.57274 * 180.23437 * 12 11 10 14 14 H 1.08003 * 120.00229 * 144.95257 * 13 12 11 15 15 C 1.39891 * 120.00081 * 324.95772 * 13 12 11 16 16 N 1.30870 * 120.00061 * 357.78248 * 15 13 12 17 17 Si 1.86795 * 120.00249 * 177.78335 * 15 13 12 18 18 H 1.48497 * 109.47290 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47555 * 119.99826 * 17 15 13 20 20 H 1.48507 * 109.47402 * 240.00017 * 17 15 13 21 21 C 1.40811 * 118.85226 * 0.48447 * 12 11 10 22 22 N 1.31499 * 120.70273 * 359.77229 * 21 12 11 23 23 C 1.32156 * 122.07552 * 359.97438 * 22 21 12 24 24 F 1.35103 * 119.45983 * 180.02562 * 23 22 21 25 25 C 1.39384 * 119.87248 * 359.97438 * 9 8 7 26 26 C 1.37904 * 119.93090 * 359.97438 * 25 9 8 27 27 H 1.09000 * 109.46927 * 321.47543 * 1 2 3 28 28 H 1.08997 * 109.47220 * 81.48056 * 1 2 3 29 29 H 1.08999 * 109.46899 * 201.47686 * 1 2 3 30 30 H 1.08997 * 109.47447 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47105 * 300.00773 * 3 2 1 32 32 H 1.09009 * 109.46620 * 60.00139 * 3 2 1 33 33 H 1.09007 * 109.47300 * 298.06043 * 4 2 1 34 34 H 1.08995 * 109.47086 * 58.06017 * 4 2 1 35 35 H 1.09003 * 109.47338 * 178.06106 * 4 2 1 36 36 H 1.08006 * 119.96640 * 0.27292 * 7 6 5 37 37 H 1.07993 * 120.03380 * 180.02562 * 8 7 6 38 38 H 1.07999 * 120.93757 * 359.97184 * 11 10 9 39 39 H 0.96994 * 120.00348 * 180.02562 * 16 15 13 40 40 H 1.07999 * 119.64477 * 179.75338 * 21 12 11 41 41 H 1.08003 * 120.03325 * 179.97438 * 25 9 8 42 42 H 1.08001 * 119.96540 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0064 -0.6737 1.1667 6 6 1.6793 -1.9860 1.2981 7 6 0.8026 -2.5750 0.3971 8 6 0.4642 -3.9052 0.5313 9 6 1.0030 -4.6581 1.5731 10 6 0.6406 -6.0892 1.7206 11 6 -0.6928 -6.4822 1.7111 12 6 -0.9819 -7.8548 1.8497 13 6 -2.3196 -8.3122 1.8421 14 1 -2.5619 -9.2654 1.3957 15 6 -3.3295 -7.5303 2.4127 16 7 -3.0300 -6.3956 2.9920 17 14 -5.1054 -8.1056 2.3479 18 1 -5.1777 -9.4104 1.6427 19 1 -5.6267 -8.2598 3.7298 20 1 -5.9241 -7.1036 1.6190 21 6 0.0844 -8.7620 2.0012 22 7 1.3295 -8.3392 2.0091 23 6 1.6375 -7.0609 1.8766 24 9 2.9351 -6.6850 1.8917 25 6 1.8830 -4.0640 2.4761 26 6 2.2184 -2.7337 2.3362 27 1 -0.3633 0.8040 0.6401 28 1 -0.3633 0.1522 -1.0163 29 1 -0.3633 -0.9563 0.3763 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.7053 -1.7585 -1.2321 34 1 1.6486 -0.2278 -2.1388 35 1 3.1295 -0.6912 -1.2668 36 1 0.3850 -1.9908 -0.4097 37 1 -0.2175 -4.3629 -0.1701 38 1 -1.4846 -5.7567 1.5973 39 1 -3.7301 -5.8536 3.3880 40 1 -0.1227 -9.8160 2.1124 41 1 2.3017 -4.6450 3.2846 42 1 2.9005 -2.2730 3.0353 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235927000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:36 Heat of formation + Delta-G solvation = -35.487395 kcal Electronic energy + Delta-G solvation = -25728.325253 eV Core-core repulsion = 21973.717857 eV Total energy + Delta-G solvation = -3754.607396 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.47419 -41.78104 -40.30881 -38.70677 -35.90535 -35.20503 -33.55252 -32.24428 -31.94804 -29.66866 -28.36311 -28.11515 -27.35227 -24.69202 -24.14500 -23.18332 -22.35074 -21.25077 -19.34995 -18.56176 -18.27881 -17.83657 -17.47342 -16.86549 -16.49776 -16.44457 -16.26485 -15.67590 -15.12894 -15.07317 -14.85496 -14.61286 -14.36429 -14.07164 -13.91803 -13.88367 -13.68482 -13.47288 -13.12973 -13.02015 -12.93812 -12.88995 -12.87089 -12.81382 -12.60830 -12.30118 -11.80083 -11.69427 -11.60099 -11.34893 -11.24675 -10.36004 -10.32139 -9.92995 -9.54025 -8.78346 -8.67464 -6.52946 0.03755 0.37286 0.67847 0.89029 1.43584 1.48174 1.58560 2.20326 2.22553 2.60714 2.78517 3.21201 3.42833 3.72927 3.79905 3.82319 3.90008 3.93480 3.98337 4.20292 4.34489 4.40126 4.58239 4.59886 4.63019 4.65655 4.74141 4.82405 4.88227 4.91106 4.93284 5.01242 5.09341 5.15578 5.18903 5.22449 5.29541 5.32630 5.40364 5.52963 5.69979 5.73354 5.80744 5.92092 6.36692 6.51446 6.62768 6.72433 7.27690 8.27642 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.003796 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.509172 B = 7374.375920 C = 8835.511274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.097 3.903 3 C -0.134 4.134 4 C -0.198 4.198 5 O -0.318 6.318 6 C 0.131 3.869 7 C -0.210 4.210 8 C -0.077 4.077 9 C -0.084 4.084 10 C -0.092 4.092 11 C -0.099 4.099 12 C 0.036 3.964 13 C -0.470 4.470 14 H 0.095 0.905 15 C 0.033 3.967 16 N -0.830 5.830 17 Si 0.993 3.007 18 H -0.253 1.253 19 H -0.270 1.270 20 H -0.265 1.265 21 C 0.009 3.991 22 N -0.509 5.509 23 C 0.152 3.848 24 F -0.142 7.142 25 C -0.073 4.073 26 C -0.157 4.157 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.176 0.824 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.291 0.709 40 H 0.158 0.842 41 H 0.119 0.881 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.678 14.610 -6.582 16.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.060 3.940 3 C -0.191 4.191 4 C -0.255 4.255 5 O -0.233 6.233 6 C 0.085 3.915 7 C -0.228 4.228 8 C -0.095 4.095 9 C -0.085 4.085 10 C -0.095 4.095 11 C -0.124 4.124 12 C 0.032 3.968 13 C -0.500 4.500 14 H 0.113 0.887 15 C -0.182 4.182 16 N -0.456 5.456 17 Si 0.813 3.187 18 H -0.176 1.176 19 H -0.195 1.195 20 H -0.190 1.190 21 C -0.152 4.152 22 N -0.221 5.221 23 C -0.001 4.001 24 F -0.121 7.121 25 C -0.091 4.091 26 C -0.175 4.175 27 H 0.089 0.911 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.192 0.808 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.102 0.898 40 H 0.176 0.824 41 H 0.137 0.863 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.432 14.387 -6.242 15.870 hybrid contribution -1.009 -0.015 0.207 1.030 sum 1.423 14.373 -6.034 15.653 Atomic orbital electron populations 1.22951 0.94424 1.03978 1.04692 1.22133 0.94483 0.93868 0.83487 1.21834 1.02113 0.91095 1.04011 1.22855 1.02539 1.02247 0.97856 1.86112 1.72923 1.19512 1.44739 1.18933 0.94040 0.83779 0.94740 1.22003 1.02126 0.95655 1.02977 1.21141 0.98083 0.93746 0.96501 1.18688 1.00210 0.91758 0.97863 1.19366 0.93342 0.92454 1.04349 1.21760 0.92869 0.97091 1.00729 1.18856 0.95282 0.92337 0.90325 1.19827 0.90998 1.05648 1.33530 0.88719 1.26831 1.05755 0.93725 0.91894 1.69798 1.37346 1.11686 1.26763 0.84973 0.75042 0.79691 0.78978 1.17576 1.19487 1.18993 1.22763 0.85377 1.00216 1.06867 1.66301 1.25129 1.16346 1.14326 1.17857 0.78364 0.89288 1.14587 1.91397 1.34691 1.90823 1.95229 1.20993 0.95869 0.94357 0.97915 1.20441 1.04158 0.92929 1.00022 0.91088 0.88752 0.91165 0.91655 0.88108 0.91638 0.91244 0.88524 0.91848 0.80769 0.85523 0.85104 0.89778 0.82434 0.86285 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.56 8.05 71.98 0.58 -2.98 16 2 C 0.10 1.84 1.11 -10.79 -0.01 1.83 16 3 C -0.13 -1.84 8.74 71.98 0.63 -1.21 16 4 C -0.20 -3.45 8.06 71.98 0.58 -2.87 16 5 O -0.32 -8.38 9.78 -92.13 -0.90 -9.28 16 6 C 0.13 3.94 6.08 22.55 0.14 4.07 16 7 C -0.21 -6.17 5.82 22.34 0.13 -6.04 16 8 C -0.08 -2.73 9.53 22.47 0.21 -2.51 16 9 C -0.08 -3.48 5.33 -20.03 -0.11 -3.59 16 10 C -0.09 -4.38 5.48 -19.95 -0.11 -4.49 16 11 C -0.10 -4.96 8.22 23.12 0.19 -4.77 16 12 C 0.04 1.86 5.52 -21.21 -0.12 1.74 16 13 C -0.47 -22.86 9.06 23.44 0.21 -22.65 16 14 H 0.09 4.30 7.85 -2.91 -0.02 4.28 16 15 C 0.03 1.50 5.37 85.24 0.46 1.96 16 16 N -0.83 -40.35 10.91 21.82 0.24 -40.11 16 17 Si 0.99 34.84 29.56 68.60 2.03 36.87 16 18 H -0.25 -8.53 7.11 99.48 0.71 -7.82 16 19 H -0.27 -9.32 7.11 99.48 0.71 -8.62 16 20 H -0.27 -8.97 7.11 99.48 0.71 -8.26 16 21 C 0.01 0.42 10.96 85.37 0.94 1.36 16 22 N -0.51 -25.97 10.33 -193.71 -2.00 -27.98 16 23 C 0.15 7.62 8.30 85.09 0.71 8.33 16 24 F -0.14 -6.75 15.91 44.97 0.72 -6.03 16 25 C -0.07 -2.77 8.86 22.47 0.20 -2.57 16 26 C -0.16 -5.09 9.97 22.33 0.22 -4.87 16 27 H 0.07 1.16 7.95 -2.39 -0.02 1.14 16 28 H 0.09 1.19 7.92 -2.39 -0.02 1.17 16 29 H 0.07 1.53 4.62 -2.39 -0.01 1.52 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.91 8.13 -2.38 -0.02 0.90 16 33 H 0.07 1.43 4.64 -2.38 -0.01 1.42 16 34 H 0.10 1.16 8.09 -2.39 -0.02 1.14 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.18 4.08 3.47 -2.91 -0.01 4.07 16 37 H 0.13 4.35 8.05 -2.91 -0.02 4.33 16 38 H 0.13 6.70 6.50 -2.91 -0.02 6.68 16 39 H 0.29 12.85 8.30 -92.71 -0.77 12.08 16 40 H 0.16 6.92 8.06 -2.91 -0.02 6.89 16 41 H 0.12 4.56 7.79 -2.91 -0.02 4.54 16 42 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -59.42 346.11 5.98 -53.45 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: 1.05 Total: 32.34 kcal Atomic # 6 Polarization: -44.11 SS G_CDS: 4.85 Total: -39.26 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: -1.76 Total: -68.08 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.90 Total: -9.28 kcal Atomic # 9 Polarization: -6.75 SS G_CDS: 0.72 Total: -6.03 kcal Atomic # 14 Polarization: 34.84 SS G_CDS: 2.03 Total: 36.87 kcal Total: -59.42 5.98 -53.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235927000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.959 kcal (2) G-P(sol) polarization free energy of solvation -59.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds