Wall clock time and date at job start Tue Mar 31 2020 10:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35544 * 116.99679 * 2 1 4 4 N 1.32149 * 119.79263 * 359.97438 * 3 2 1 5 5 C 1.31963 * 121.79411 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.41849 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47101 * 265.00232 * 6 5 4 8 8 C 1.52999 * 109.47295 * 145.00445 * 6 5 4 9 9 C 1.38312 * 121.16676 * 0.27950 * 5 4 3 10 10 C 1.38420 * 119.44132 * 359.45018 * 9 5 4 11 11 C 1.39864 * 118.35513 * 0.53476 * 10 9 5 12 12 C 1.47867 * 120.59239 * 179.71086 * 11 10 9 13 13 C 1.40084 * 119.86670 * 129.73964 * 12 11 10 14 14 C 1.36164 * 120.17387 * 179.75558 * 13 12 11 15 15 C 1.40965 * 119.90720 * 0.54447 * 14 13 12 16 16 C 1.40915 * 120.13358 * 179.72995 * 15 14 13 17 17 H 1.08000 * 120.00089 * 154.27364 * 16 15 14 18 18 C 1.39980 * 119.99887 * 334.28565 * 16 15 14 19 19 N 1.30829 * 120.00345 * 343.27537 * 18 16 15 20 20 Si 1.86808 * 119.99742 * 163.27041 * 18 16 15 21 21 H 1.48500 * 109.47174 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46634 * 119.99712 * 20 18 16 23 23 H 1.48497 * 109.47175 * 239.99923 * 20 18 16 24 24 C 1.41197 * 119.73616 * 359.71641 * 15 14 13 25 25 F 1.35095 * 120.08780 * 179.97438 * 24 15 14 26 26 C 1.36529 * 119.81957 * 359.97438 * 24 15 14 27 27 H 1.08997 * 109.46677 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46891 * 299.99804 * 1 2 3 29 29 H 1.09000 * 109.47034 * 59.99987 * 1 2 3 30 30 H 1.08997 * 109.47130 * 25.00218 * 6 5 4 31 31 H 1.09001 * 109.47143 * 59.99412 * 7 6 5 32 32 H 1.09003 * 109.47447 * 179.97438 * 7 6 5 33 33 H 1.09006 * 109.47099 * 300.00156 * 7 6 5 34 34 H 1.09002 * 109.46553 * 299.99787 * 8 6 5 35 35 H 1.08997 * 109.47217 * 59.99826 * 8 6 5 36 36 H 1.09001 * 109.47310 * 180.02562 * 8 6 5 37 37 H 1.07994 * 120.27772 * 179.70661 * 9 5 4 38 38 H 1.07996 * 120.82620 * 180.24097 * 10 9 5 39 39 H 1.07998 * 119.91623 * 0.02947 * 13 12 11 40 40 H 1.08004 * 120.04799 * 180.25390 * 14 13 12 41 41 H 0.97003 * 120.00074 * 180.02562 * 19 18 16 42 42 H 1.08001 * 119.94930 * 180.02562 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 7 1.3206 2.3134 -0.0005 5 6 1.8782 3.5094 0.0000 6 6 1.0012 4.7350 -0.0001 7 6 0.8072 5.2232 -1.4370 8 6 1.6651 5.8372 0.8277 9 6 3.2533 3.6581 -0.0047 10 6 4.0593 2.5328 0.0015 11 6 3.4456 1.2761 0.0010 12 6 4.2591 0.0413 0.0011 13 6 3.9939 -0.9687 0.9349 14 6 4.7359 -2.1104 0.9374 15 6 5.7810 -2.2715 0.0052 16 6 6.5555 -3.4487 0.0072 17 1 7.0464 -3.7737 -0.8982 18 6 6.6885 -4.1970 1.1827 19 7 6.3853 -3.6612 2.3371 20 14 7.2988 -5.9608 1.1031 21 1 7.5716 -6.3269 -0.3100 22 1 8.5472 -6.0888 1.8970 23 1 6.2633 -6.8684 1.6591 24 6 6.0485 -1.2487 -0.9308 25 9 7.0487 -1.3954 -1.8269 26 6 5.2935 -0.1111 -0.9276 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.0322 4.4884 0.4338 31 1 0.3343 4.4379 -2.0268 32 1 0.1725 6.1094 -1.4372 33 1 1.7762 5.4698 -1.8710 34 1 1.8033 5.4894 1.8514 35 1 2.6341 6.0838 0.3938 36 1 1.0306 6.7235 0.8281 37 1 3.6943 4.6439 -0.0090 38 1 5.1355 2.6230 0.0019 39 1 3.1961 -0.8434 1.6519 40 1 4.5270 -2.8896 1.6556 41 1 6.4778 -4.1797 3.1517 42 1 5.4960 0.6724 -1.6428 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236444767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:56 Heat of formation + Delta-G solvation = -47.689774 kcal Electronic energy + Delta-G solvation = -25540.314774 eV Core-core repulsion = 21785.178243 eV Total energy + Delta-G solvation = -3755.136530 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -47.25943 -40.40940 -37.90032 -37.44243 -35.20479 -33.98547 -32.17861 -30.53071 -29.24295 -28.74296 -27.33136 -26.81019 -25.51181 -23.35497 -22.62335 -21.17075 -20.69156 -20.13652 -17.60601 -17.49659 -16.78733 -16.15997 -15.69411 -15.32419 -15.20996 -14.59687 -14.38481 -14.20432 -14.03543 -13.89660 -13.77179 -13.41660 -13.01812 -12.71969 -12.66655 -12.55215 -12.15838 -11.85930 -11.69416 -11.68973 -11.35965 -11.31487 -11.28907 -11.12571 -10.97300 -10.82124 -10.66377 -10.61996 -9.89605 -9.70066 -9.43234 -9.30166 -9.23052 -8.13690 -7.53271 -7.24199 -6.93372 -4.48955 1.37082 1.66314 2.59071 2.85620 2.99484 3.04910 3.07157 3.48681 3.80817 4.06923 4.28514 4.45434 4.77457 5.06643 5.15814 5.24255 5.33575 5.40044 5.45297 5.51061 5.52034 5.53336 5.61967 5.70502 5.73783 5.82581 5.86685 5.90571 6.02354 6.13094 6.15966 6.22557 6.38171 6.44898 6.57864 6.82860 6.85726 7.00612 7.08966 7.46039 7.52059 7.68225 7.89041 7.92779 8.01460 8.23566 8.43533 8.59353 8.75026 9.96217 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022820 B = 0.003215 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.679176 B = 8706.070331 C = 9210.194887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.289 6.289 3 C 0.314 3.686 4 N -0.538 5.538 5 C 0.143 3.857 6 C -0.042 4.042 7 C -0.139 4.139 8 C -0.146 4.146 9 C -0.201 4.201 10 C -0.056 4.056 11 C -0.056 4.056 12 C -0.169 4.169 13 C -0.065 4.065 14 C -0.153 4.153 15 C 0.095 3.905 16 C -0.441 4.441 17 H 0.086 0.914 18 C 0.074 3.926 19 N -0.779 5.779 20 Si 0.914 3.086 21 H -0.258 1.258 22 H -0.272 1.272 23 H -0.269 1.269 24 C -0.033 4.033 25 F -0.164 7.164 26 C -0.096 4.096 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.094 0.906 40 H 0.125 0.875 41 H 0.285 0.715 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.034 11.503 -1.195 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.195 6.195 3 C 0.135 3.865 4 N -0.262 5.262 5 C 0.006 3.994 6 C -0.061 4.061 7 C -0.197 4.197 8 C -0.203 4.203 9 C -0.222 4.222 10 C -0.081 4.081 11 C -0.059 4.059 12 C -0.171 4.171 13 C -0.084 4.084 14 C -0.173 4.173 15 C 0.091 3.909 16 C -0.469 4.469 17 H 0.104 0.896 18 C -0.146 4.146 19 N -0.402 5.402 20 Si 0.738 3.262 21 H -0.181 1.181 22 H -0.197 1.197 23 H -0.194 1.194 24 C -0.053 4.053 25 F -0.143 7.143 26 C -0.115 4.115 27 H 0.110 0.890 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.148 0.852 38 H 0.155 0.845 39 H 0.112 0.888 40 H 0.143 0.857 41 H 0.096 0.904 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.790 11.077 -0.966 14.815 hybrid contribution 1.101 -0.616 -0.044 1.262 sum -8.689 10.461 -1.010 13.636 Atomic orbital electron populations 1.22772 0.78602 1.02455 1.01662 1.86393 1.21482 1.24084 1.87567 1.19959 0.88873 0.84143 0.93535 1.66928 1.40986 0.98281 1.20002 1.20613 0.91609 0.91103 0.96025 1.19959 0.98278 0.90956 0.96909 1.21790 1.01880 1.00851 0.95204 1.21908 1.00863 0.97593 0.99957 1.21637 0.93946 0.99410 1.07164 1.21589 1.00367 0.90512 0.95619 1.18908 0.89676 0.94587 1.02703 1.17456 1.01518 0.95093 1.03043 1.20418 0.97937 0.93358 0.96651 1.20809 0.96088 0.98013 1.02364 1.17713 0.91709 0.91196 0.90238 1.19623 1.25395 1.05135 0.96793 0.89634 1.26001 0.93483 1.00480 0.94589 1.69818 1.34231 1.37220 0.98956 0.86147 0.79003 0.81043 0.80017 1.18101 1.19693 1.19402 1.17389 0.93066 0.97236 0.97566 1.91275 1.59913 1.96342 1.66816 1.20198 0.95916 0.96314 0.99054 0.89041 0.92879 0.92919 0.89798 0.92485 0.92263 0.92472 0.92384 0.92057 0.92215 0.85160 0.84513 0.88760 0.85684 0.90388 0.88192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.38 101.05 1.05 1.61 16 2 O -0.29 -5.36 8.86 -18.33 -0.16 -5.52 16 3 C 0.31 5.89 7.42 -16.65 -0.12 5.76 16 4 N -0.54 -9.01 9.12 -9.19 -0.08 -9.10 16 5 C 0.14 2.06 5.79 -82.51 -0.48 1.58 16 6 C -0.04 -0.46 3.23 -91.77 -0.30 -0.75 16 7 C -0.14 -1.34 9.17 37.16 0.34 -0.99 16 8 C -0.15 -1.28 8.62 37.16 0.32 -0.96 16 9 C -0.20 -2.84 9.15 -39.49 -0.36 -3.20 16 10 C -0.06 -0.92 9.66 -38.91 -0.38 -1.30 16 11 C -0.06 -1.09 5.49 -104.58 -0.57 -1.66 16 12 C -0.17 -3.76 5.32 -104.66 -0.56 -4.31 16 13 C -0.06 -1.51 8.73 -39.63 -0.35 -1.86 16 14 C -0.15 -3.88 8.62 -39.30 -0.34 -4.21 16 15 C 0.09 2.52 5.57 -106.73 -0.59 1.92 16 16 C -0.44 -11.60 8.75 -37.92 -0.33 -11.94 16 17 H 0.09 2.23 7.74 -52.49 -0.41 1.82 16 18 C 0.07 1.81 5.15 -17.33 -0.09 1.72 16 19 N -0.78 -19.25 10.95 55.55 0.61 -18.64 16 20 Si 0.91 18.09 29.59 -169.99 -5.03 13.06 16 21 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 23 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 24 C -0.03 -0.83 7.26 -39.08 -0.28 -1.11 16 25 F -0.16 -4.15 16.71 2.25 0.04 -4.11 16 26 C -0.10 -2.19 9.43 -39.60 -0.37 -2.57 16 27 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 29 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.50 6.47 -51.93 -0.34 0.17 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.13 1.45 6.29 -52.49 -0.33 1.12 16 38 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 39 H 0.09 2.07 7.70 -52.49 -0.40 1.67 16 40 H 0.13 3.21 6.19 -52.48 -0.32 2.89 16 41 H 0.29 6.32 8.30 -40.82 -0.34 5.99 16 42 H 0.10 2.06 8.04 -52.49 -0.42 1.64 16 LS Contribution 356.27 15.07 5.37 5.37 Total: -1.00 -28.23 356.27 -8.25 -36.48 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.58 Total: 4.72 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -3.41 Total: -22.26 kcal Atomic # 7 Polarization: -28.26 SS G_CDS: 0.52 Total: -27.74 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.16 Total: -5.52 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.04 Total: -4.11 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.23 -8.25 -36.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236444767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.208 kcal (2) G-P(sol) polarization free energy of solvation -28.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds