Wall clock time and date at job start Tue Mar 31 2020 10:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35624 * 116.99943 * 2 1 4 4 N 1.32163 * 119.76705 * 0.02562 * 3 2 1 5 5 C 1.31961 * 121.77349 * 179.97438 * 4 3 2 6 6 C 1.50694 * 119.44805 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47042 * 265.00088 * 6 5 4 8 8 C 1.53006 * 109.46935 * 145.00233 * 6 5 4 9 9 C 1.38194 * 121.09625 * 0.27815 * 5 4 3 10 10 C 1.38553 * 119.40964 * 359.45430 * 9 5 4 11 11 C 1.39549 * 118.37538 * 0.52993 * 10 9 5 12 12 C 1.48335 * 120.56394 * 179.70999 * 11 10 9 13 13 C 1.39844 * 119.96624 * 129.74255 * 12 11 10 14 14 C 1.38236 * 120.41603 * 179.72412 * 13 12 11 15 15 C 1.38068 * 120.34796 * 0.55596 * 14 13 12 16 16 F 1.35104 * 120.04051 * 179.74492 * 15 14 13 17 17 C 1.41048 * 119.92374 * 359.72618 * 15 14 13 18 18 C 1.41313 * 120.20392 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00571 * 334.67325 * 18 17 15 20 20 C 1.39915 * 120.00200 * 154.67668 * 18 17 15 21 21 N 1.30856 * 119.99473 * 342.88307 * 20 18 17 22 22 Si 1.86795 * 120.00458 * 162.88510 * 20 18 17 23 23 H 1.48495 * 109.47226 * 59.99928 * 22 20 18 24 24 H 1.48499 * 109.47382 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46770 * 299.99908 * 22 20 18 26 26 C 1.38693 * 119.96318 * 310.02806 * 12 11 10 27 27 H 1.08997 * 109.47150 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46953 * 299.99779 * 1 2 3 29 29 H 1.09000 * 109.47320 * 59.99574 * 1 2 3 30 30 H 1.08994 * 109.47242 * 25.00383 * 6 5 4 31 31 H 1.08994 * 109.47049 * 60.00748 * 7 6 5 32 32 H 1.09008 * 109.46861 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.47285 * 300.00067 * 7 6 5 34 34 H 1.09003 * 109.47198 * 60.00052 * 8 6 5 35 35 H 1.08997 * 109.47150 * 179.97438 * 8 6 5 36 36 H 1.08997 * 109.47263 * 299.99973 * 8 6 5 37 37 H 1.08003 * 120.28749 * 179.69587 * 9 5 4 38 38 H 1.07998 * 120.80607 * 180.23663 * 10 9 5 39 39 H 1.08002 * 119.79672 * 0.02562 * 13 12 11 40 40 H 1.08000 * 119.82769 * 180.26212 * 14 13 12 41 41 H 0.96999 * 119.99833 * 180.02562 * 21 20 18 42 42 H 1.07998 * 120.17786 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 7 1.3203 2.3139 0.0005 5 6 1.8779 3.5099 0.0010 6 6 1.0015 4.7359 0.0022 7 6 0.8066 5.2247 -1.4344 8 6 1.6667 5.8374 0.8300 9 6 3.2520 3.6569 -0.0047 10 6 4.0569 2.5291 0.0004 11 6 3.4427 1.2760 -0.0001 12 6 4.2577 0.0366 -0.0012 13 6 3.9947 -0.9732 0.9298 14 6 4.7446 -2.1344 0.9334 15 6 5.7699 -2.3055 0.0247 16 9 6.5022 -3.4408 0.0371 17 6 6.0516 -1.2939 -0.9170 18 6 7.0992 -1.4631 -1.8502 19 1 7.9253 -2.1201 -1.6215 20 6 7.0664 -0.7793 -3.0704 21 7 5.9446 -0.2593 -3.4989 22 14 8.6236 -0.6088 -4.0878 23 1 9.1311 -1.9576 -4.4460 24 1 8.3243 0.1521 -5.3274 25 1 9.6534 0.1142 -3.2991 26 6 5.2836 -0.1170 -0.9218 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 0.0328 4.4896 0.4368 31 1 0.3327 4.4401 -2.0241 32 1 0.1731 6.1118 -1.4335 33 1 1.7754 5.4711 -1.8691 34 1 2.6355 6.0837 0.3954 35 1 1.0331 6.7243 0.8305 36 1 1.8056 5.4891 1.8534 37 1 3.6944 4.6421 -0.0091 38 1 5.1332 2.6178 0.0000 39 1 3.1974 -0.8471 1.6474 40 1 4.5305 -2.9099 1.6540 41 1 5.9217 0.2144 -4.3451 42 1 5.4915 0.6638 -1.6383 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236445305.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:43 Heat of formation + Delta-G solvation = -47.474570 kcal Electronic energy + Delta-G solvation = -25833.318171 eV Core-core repulsion = 22078.190973 eV Total energy + Delta-G solvation = -3755.127198 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -47.22989 -40.44632 -37.90394 -37.38479 -35.13432 -33.83699 -32.32866 -30.50414 -29.74119 -27.97624 -27.29134 -26.65727 -25.37835 -23.72810 -22.62930 -21.22971 -20.78397 -19.93616 -17.67367 -17.45502 -16.48940 -16.06719 -15.63262 -15.62733 -15.15594 -14.75866 -14.42015 -14.31527 -13.99220 -13.88363 -13.45506 -13.23189 -13.01841 -12.70918 -12.70810 -12.43689 -12.12282 -11.86272 -11.68829 -11.65124 -11.39139 -11.35602 -11.19699 -11.12974 -10.97176 -10.78860 -10.65027 -10.47148 -10.11436 -9.64179 -9.41473 -9.23641 -9.21105 -8.12107 -7.60881 -7.08135 -6.82343 -4.44554 1.36924 1.66639 2.65060 2.76576 3.03122 3.06235 3.14140 3.47747 3.87865 4.07573 4.27590 4.49819 4.78470 5.07964 5.17103 5.24348 5.33687 5.38852 5.46340 5.51254 5.53333 5.53863 5.62290 5.73093 5.75241 5.83065 5.87985 5.92102 6.03639 6.10616 6.15707 6.20262 6.36890 6.52130 6.56852 6.80535 6.88328 7.06275 7.15369 7.39854 7.56794 7.66176 7.85106 7.91602 8.03637 8.21357 8.46083 8.69641 8.78008 10.08951 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013122 B = 0.004298 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.322969 B = 6512.983488 C = 7822.516761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.288 6.288 3 C 0.326 3.674 4 N -0.541 5.541 5 C 0.153 3.847 6 C -0.042 4.042 7 C -0.140 4.140 8 C -0.146 4.146 9 C -0.205 4.205 10 C -0.039 4.039 11 C -0.078 4.078 12 C -0.045 4.045 13 C -0.182 4.182 14 C -0.125 4.125 15 C -0.024 4.024 16 F -0.163 7.163 17 C 0.084 3.916 18 C -0.456 4.456 19 H 0.083 0.917 20 C 0.077 3.923 21 N -0.790 5.790 22 Si 0.911 3.089 23 H -0.264 1.264 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.121 4.121 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.283 0.717 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.297 10.606 4.138 14.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.194 6.194 3 C 0.147 3.853 4 N -0.264 5.264 5 C 0.016 3.984 6 C -0.062 4.062 7 C -0.198 4.198 8 C -0.203 4.203 9 C -0.226 4.226 10 C -0.064 4.064 11 C -0.081 4.081 12 C -0.046 4.046 13 C -0.202 4.202 14 C -0.144 4.144 15 C -0.044 4.044 16 F -0.143 7.143 17 C 0.081 3.919 18 C -0.485 4.485 19 H 0.101 0.899 20 C -0.142 4.142 21 N -0.415 5.415 22 Si 0.735 3.265 23 H -0.188 1.188 24 H -0.202 1.202 25 H -0.186 1.186 26 C -0.141 4.141 27 H 0.110 0.890 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.151 0.849 38 H 0.158 0.842 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.094 0.906 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.183 10.324 3.918 14.362 hybrid contribution 1.302 -0.072 -0.607 1.438 sum -7.881 10.252 3.311 13.349 Atomic orbital electron populations 1.22777 0.78540 1.02474 1.01718 1.86424 1.21570 1.23985 1.87444 1.19819 0.88726 0.84243 0.92555 1.66965 1.40871 0.98253 1.20358 1.20647 0.91663 0.91151 0.94892 1.19979 0.98258 0.90890 0.97044 1.21795 1.02017 1.00895 0.95099 1.21912 1.00932 0.97594 0.99897 1.21656 0.93937 0.99490 1.07483 1.21551 1.00626 0.90343 0.93902 1.19015 0.90016 0.94964 1.04118 1.18177 0.96589 0.92058 0.97807 1.20113 1.02891 0.94725 1.02434 1.20395 0.96818 0.98061 0.99115 1.17937 0.97113 0.84522 1.04840 1.91271 1.76992 1.49426 1.96566 1.17497 0.93251 0.89849 0.91294 1.19455 1.05966 1.23640 0.99428 0.89918 1.25895 0.97231 0.93146 0.97882 1.69817 1.26028 1.26255 1.19406 0.86302 0.81892 0.79607 0.78649 1.18831 1.20227 1.18649 1.21224 0.96271 0.97811 0.98789 0.89035 0.92881 0.92793 0.89734 0.92396 0.92213 0.92369 0.91996 0.92170 0.92391 0.84935 0.84174 0.88369 0.87992 0.90578 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.38 101.05 1.05 1.62 16 2 O -0.29 -5.48 8.86 -18.57 -0.16 -5.65 16 3 C 0.33 6.28 7.42 -16.76 -0.12 6.16 16 4 N -0.54 -9.28 9.12 -9.28 -0.08 -9.36 16 5 C 0.15 2.27 5.79 -82.56 -0.48 1.79 16 6 C -0.04 -0.47 3.23 -91.77 -0.30 -0.77 16 7 C -0.14 -1.43 9.18 37.16 0.34 -1.09 16 8 C -0.15 -1.30 8.62 37.16 0.32 -0.98 16 9 C -0.21 -3.01 9.16 -39.48 -0.36 -3.37 16 10 C -0.04 -0.68 9.65 -38.98 -0.38 -1.06 16 11 C -0.08 -1.58 5.49 -104.61 -0.57 -2.16 16 12 C -0.05 -1.04 5.29 -104.97 -0.55 -1.59 16 13 C -0.18 -4.08 8.80 -38.98 -0.34 -4.43 16 14 C -0.12 -2.88 9.99 -39.64 -0.40 -3.28 16 15 C -0.02 -0.61 7.31 -38.58 -0.28 -0.90 16 16 F -0.16 -4.17 16.71 2.25 0.04 -4.14 16 17 C 0.08 2.25 5.57 -106.80 -0.59 1.66 16 18 C -0.46 -12.17 8.77 -37.79 -0.33 -12.50 16 19 H 0.08 2.18 7.74 -52.49 -0.41 1.78 16 20 C 0.08 1.91 5.15 -17.34 -0.09 1.82 16 21 N -0.79 -20.10 10.97 55.55 0.61 -19.49 16 22 Si 0.91 18.50 29.59 -169.99 -5.03 13.47 16 23 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 24 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 25 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 26 C -0.12 -3.06 8.16 -38.55 -0.31 -3.37 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 29 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.52 6.48 -51.93 -0.34 0.19 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.13 1.54 6.29 -52.48 -0.33 1.21 16 38 H 0.14 2.27 8.06 -52.49 -0.42 1.84 16 39 H 0.10 2.04 7.70 -52.49 -0.40 1.63 16 40 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 41 H 0.28 6.57 8.30 -40.82 -0.34 6.24 16 42 H 0.13 3.27 6.17 -52.49 -0.32 2.95 16 LS Contribution 356.49 15.07 5.37 5.37 Total: -1.00 -28.96 356.49 -8.25 -37.21 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.58 Total: 5.02 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -3.41 Total: -22.44 kcal Atomic # 7 Polarization: -29.38 SS G_CDS: 0.52 Total: -28.85 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.16 Total: -5.65 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.04 Total: -4.14 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.96 -8.25 -37.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236445305.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.263 kcal (2) G-P(sol) polarization free energy of solvation -28.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds