Wall clock time and date at job start Tue Mar 31 2020 10:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35624 * 116.99943 * 2 1 4 4 N 1.32163 * 119.76705 * 0.02562 * 3 2 1 5 5 C 1.31961 * 121.77349 * 179.97438 * 4 3 2 6 6 C 1.50694 * 119.44805 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47042 * 265.00088 * 6 5 4 8 8 C 1.53006 * 109.46935 * 145.00233 * 6 5 4 9 9 C 1.38194 * 121.09625 * 0.27815 * 5 4 3 10 10 C 1.38553 * 119.40964 * 359.45430 * 9 5 4 11 11 C 1.39549 * 118.37538 * 0.52993 * 10 9 5 12 12 C 1.48335 * 120.56394 * 179.70999 * 11 10 9 13 13 C 1.39844 * 119.96624 * 129.74255 * 12 11 10 14 14 C 1.38236 * 120.41603 * 179.72412 * 13 12 11 15 15 C 1.38068 * 120.34796 * 0.55596 * 14 13 12 16 16 F 1.35104 * 120.04051 * 179.74492 * 15 14 13 17 17 C 1.41048 * 119.92374 * 359.72618 * 15 14 13 18 18 C 1.41313 * 120.20392 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00571 * 334.67325 * 18 17 15 20 20 C 1.39915 * 120.00200 * 154.67668 * 18 17 15 21 21 N 1.30856 * 119.99473 * 342.88307 * 20 18 17 22 22 Si 1.86795 * 120.00458 * 162.88510 * 20 18 17 23 23 H 1.48495 * 109.47226 * 59.99928 * 22 20 18 24 24 H 1.48499 * 109.47382 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46770 * 299.99908 * 22 20 18 26 26 C 1.38693 * 119.96318 * 310.02806 * 12 11 10 27 27 H 1.08997 * 109.47150 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46953 * 299.99779 * 1 2 3 29 29 H 1.09000 * 109.47320 * 59.99574 * 1 2 3 30 30 H 1.08994 * 109.47242 * 25.00383 * 6 5 4 31 31 H 1.08994 * 109.47049 * 60.00748 * 7 6 5 32 32 H 1.09008 * 109.46861 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.47285 * 300.00067 * 7 6 5 34 34 H 1.09003 * 109.47198 * 60.00052 * 8 6 5 35 35 H 1.08997 * 109.47150 * 179.97438 * 8 6 5 36 36 H 1.08997 * 109.47263 * 299.99973 * 8 6 5 37 37 H 1.08003 * 120.28749 * 179.69587 * 9 5 4 38 38 H 1.07998 * 120.80607 * 180.23663 * 10 9 5 39 39 H 1.08002 * 119.79672 * 0.02562 * 13 12 11 40 40 H 1.08000 * 119.82769 * 180.26212 * 14 13 12 41 41 H 0.96999 * 119.99833 * 180.02562 * 21 20 18 42 42 H 1.07998 * 120.17786 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 7 1.3203 2.3139 0.0005 5 6 1.8779 3.5099 0.0010 6 6 1.0015 4.7359 0.0022 7 6 0.8066 5.2247 -1.4344 8 6 1.6667 5.8374 0.8300 9 6 3.2520 3.6569 -0.0047 10 6 4.0569 2.5291 0.0004 11 6 3.4427 1.2760 -0.0001 12 6 4.2577 0.0366 -0.0012 13 6 3.9947 -0.9732 0.9298 14 6 4.7446 -2.1344 0.9334 15 6 5.7699 -2.3055 0.0247 16 9 6.5022 -3.4408 0.0371 17 6 6.0516 -1.2939 -0.9170 18 6 7.0992 -1.4631 -1.8502 19 1 7.9253 -2.1201 -1.6215 20 6 7.0664 -0.7793 -3.0704 21 7 5.9446 -0.2593 -3.4989 22 14 8.6236 -0.6088 -4.0878 23 1 9.1311 -1.9576 -4.4460 24 1 8.3243 0.1521 -5.3274 25 1 9.6534 0.1142 -3.2991 26 6 5.2836 -0.1170 -0.9218 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 0.0328 4.4896 0.4368 31 1 0.3327 4.4401 -2.0241 32 1 0.1731 6.1118 -1.4335 33 1 1.7754 5.4711 -1.8691 34 1 2.6355 6.0837 0.3954 35 1 1.0331 6.7243 0.8305 36 1 1.8056 5.4891 1.8534 37 1 3.6944 4.6421 -0.0091 38 1 5.1332 2.6178 0.0000 39 1 3.1974 -0.8471 1.6474 40 1 4.5305 -2.9099 1.6540 41 1 5.9217 0.2144 -4.3451 42 1 5.4915 0.6638 -1.6383 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236445305.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:42 Heat of formation + Delta-G solvation = -62.575592 kcal Electronic energy + Delta-G solvation = -25833.973000 eV Core-core repulsion = 22078.190973 eV Total energy + Delta-G solvation = -3755.782028 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.21633 -41.77100 -39.21013 -39.13975 -36.29222 -35.61655 -33.74802 -32.01086 -31.54396 -29.48861 -28.13212 -27.77176 -27.27994 -25.05472 -24.01108 -23.01941 -22.22951 -21.32185 -19.38771 -18.84430 -18.00928 -17.76752 -17.28334 -16.96851 -16.71287 -16.31714 -16.00405 -15.91023 -15.33112 -14.99800 -14.83747 -14.55176 -14.46564 -14.34651 -13.92904 -13.82359 -13.63549 -13.44427 -13.07466 -12.88873 -12.78967 -12.77538 -12.54421 -12.25986 -12.19030 -12.16736 -11.98351 -11.87672 -11.67779 -11.46506 -11.15150 -10.74646 -10.55599 -9.61434 -9.52926 -8.82428 -8.65953 -6.44089 -0.03857 0.33914 0.86457 0.90736 1.36293 1.47189 1.50769 2.17859 2.19797 2.57992 2.80427 3.14242 3.47654 3.77755 3.89175 4.01121 4.11484 4.19881 4.26832 4.32288 4.34610 4.38958 4.43089 4.47326 4.67906 4.72147 4.76807 4.85575 4.93189 4.95919 4.99981 5.01338 5.11421 5.17566 5.26153 5.33789 5.39076 5.44306 5.51989 5.61654 5.69902 5.96188 5.99962 6.13539 6.34427 6.51192 6.75544 6.83498 6.90808 8.24558 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013122 B = 0.004298 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.322969 B = 6512.983488 C = 7822.516761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.315 6.315 3 C 0.316 3.684 4 N -0.545 5.545 5 C 0.157 3.843 6 C -0.041 4.041 7 C -0.138 4.138 8 C -0.143 4.143 9 C -0.197 4.197 10 C -0.040 4.040 11 C -0.121 4.121 12 C -0.035 4.035 13 C -0.180 4.180 14 C -0.120 4.120 15 C -0.059 4.059 16 F -0.170 7.170 17 C 0.058 3.942 18 C -0.495 4.495 19 H 0.072 0.928 20 C 0.041 3.959 21 N -0.818 5.818 22 Si 0.984 3.016 23 H -0.263 1.263 24 H -0.262 1.262 25 H -0.256 1.256 26 C -0.139 4.139 27 H 0.114 0.886 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.169 0.831 38 H 0.144 0.856 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.292 0.708 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.267 13.217 4.220 16.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.222 6.222 3 C 0.137 3.863 4 N -0.269 5.269 5 C 0.020 3.980 6 C -0.060 4.060 7 C -0.195 4.195 8 C -0.200 4.200 9 C -0.217 4.217 10 C -0.065 4.065 11 C -0.124 4.124 12 C -0.036 4.036 13 C -0.199 4.199 14 C -0.139 4.139 15 C -0.079 4.079 16 F -0.149 7.149 17 C 0.055 3.945 18 C -0.524 4.524 19 H 0.090 0.910 20 C -0.175 4.175 21 N -0.443 5.443 22 Si 0.803 3.197 23 H -0.188 1.188 24 H -0.186 1.186 25 H -0.180 1.180 26 C -0.159 4.159 27 H 0.132 0.868 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.187 0.813 38 H 0.162 0.838 39 H 0.135 0.865 40 H 0.147 0.853 41 H 0.103 0.897 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.177 12.926 4.018 16.935 hybrid contribution 1.406 -0.769 -0.561 1.698 sum -8.771 12.157 3.457 15.384 Atomic orbital electron populations 1.23016 0.76354 1.04193 1.02159 1.86366 1.23927 1.24406 1.87502 1.19867 0.88543 0.84983 0.92898 1.67099 1.40638 0.98484 1.20688 1.21483 0.92642 0.91698 0.92181 1.20132 0.97769 0.89832 0.98286 1.21790 1.02524 1.01364 0.93864 1.21913 1.01596 0.97382 0.99111 1.22008 0.93706 1.00145 1.05844 1.21734 1.01246 0.90327 0.93204 1.19012 0.90552 0.94776 1.08082 1.18443 0.95502 0.93313 0.96334 1.20395 1.02845 0.94293 1.02379 1.20689 0.95583 0.98927 0.98692 1.18228 0.98606 0.84716 1.06320 1.91234 1.77334 1.49610 1.96718 1.17866 0.93940 0.90744 0.91949 1.19636 1.06342 1.25423 1.00986 0.90988 1.26713 1.00434 0.92026 0.98288 1.69862 1.27857 1.26480 1.20124 0.85231 0.77499 0.79634 0.77292 1.18773 1.18571 1.17977 1.21143 0.97716 0.97333 0.99695 0.86759 0.91895 0.92791 0.89610 0.94138 0.89549 0.92226 0.91210 0.89891 0.92747 0.81342 0.83802 0.86451 0.85301 0.89739 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.02 10.38 113.37 1.18 2.20 16 2 O -0.32 -11.95 8.86 -89.37 -0.79 -12.74 16 3 C 0.32 12.10 7.42 85.06 0.63 12.73 16 4 N -0.55 -18.06 9.12 -296.22 -2.70 -20.76 16 5 C 0.16 4.32 5.79 42.53 0.25 4.57 16 6 C -0.04 -0.79 3.23 -11.54 -0.04 -0.82 16 7 C -0.14 -2.37 9.18 71.98 0.66 -1.71 16 8 C -0.14 -1.97 8.62 71.98 0.62 -1.35 16 9 C -0.20 -5.34 9.16 22.33 0.20 -5.13 16 10 C -0.04 -1.36 9.65 22.66 0.22 -1.15 16 11 C -0.12 -4.94 5.49 -19.85 -0.11 -5.05 16 12 C -0.03 -1.64 5.29 -20.09 -0.11 -1.75 16 13 C -0.18 -8.13 8.80 22.66 0.20 -7.93 16 14 C -0.12 -5.62 9.99 22.23 0.22 -5.39 16 15 C -0.06 -3.13 7.31 22.92 0.17 -2.96 16 16 F -0.17 -9.02 16.71 44.97 0.75 -8.27 16 17 C 0.06 3.25 5.57 -21.27 -0.12 3.13 16 18 C -0.50 -27.66 8.77 23.43 0.21 -27.46 16 19 H 0.07 4.01 7.74 -2.91 -0.02 3.99 16 20 C 0.04 2.10 5.15 85.24 0.44 2.54 16 21 N -0.82 -42.70 10.97 21.82 0.24 -42.46 16 22 Si 0.98 38.33 29.59 68.60 2.03 40.36 16 23 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 24 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 25 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 26 C -0.14 -7.32 8.16 22.94 0.19 -7.13 16 27 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.06 1.57 8.11 -2.39 -0.02 1.55 16 29 H 0.05 1.45 8.11 -2.39 -0.02 1.43 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 34 H 0.07 0.86 6.48 -2.39 -0.02 0.85 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.17 3.28 6.29 -2.91 -0.02 3.26 16 38 H 0.14 4.66 8.06 -2.91 -0.02 4.63 16 39 H 0.12 4.81 7.70 -2.91 -0.02 4.78 16 40 H 0.13 5.19 8.06 -2.91 -0.02 5.16 16 41 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 42 H 0.12 6.27 6.17 -2.91 -0.02 6.25 16 Total: -1.00 -65.62 356.49 5.37 -60.25 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 1.03 Total: 26.30 kcal Atomic # 6 Polarization: -47.47 SS G_CDS: 4.81 Total: -42.67 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -2.46 Total: -63.23 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.79 Total: -12.74 kcal Atomic # 9 Polarization: -9.02 SS G_CDS: 0.75 Total: -8.27 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -65.62 5.37 -60.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236445305.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.327 kcal (2) G-P(sol) polarization free energy of solvation -65.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds