Wall clock time and date at job start Tue Mar 31 2020 11:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47029 * 2 1 4 4 C 1.53004 * 109.46923 * 120.00045 * 2 1 3 5 5 O 1.42903 * 109.46971 * 175.00368 * 4 2 1 6 6 C 1.35897 * 116.99796 * 179.97438 * 5 4 2 7 7 C 1.38862 * 119.97031 * 0.02562 * 6 5 4 8 8 C 1.38500 * 120.22728 * 180.02562 * 7 6 5 9 9 F 1.35104 * 119.92027 * 179.97438 * 8 7 6 10 10 C 1.38200 * 120.16217 * 359.69476 * 8 7 6 11 11 C 1.39642 * 119.93028 * 0.53070 * 10 8 7 12 12 C 1.47832 * 120.11782 * 179.76674 * 11 10 8 13 13 N 1.32577 * 119.99151 * 136.00820 * 12 11 10 14 14 C 1.31738 * 121.72093 * 179.71245 * 13 12 11 15 15 C 1.38874 * 121.50128 * 0.58272 * 14 13 12 16 16 C 1.36881 * 119.79879 * 359.45136 * 15 14 13 17 17 C 1.41125 * 118.39742 * 0.25265 * 16 15 14 18 18 C 1.40888 * 120.72133 * 180.02562 * 17 16 15 19 19 H 1.07993 * 119.99952 * 150.78444 * 18 17 16 20 20 C 1.40070 * 119.99751 * 330.78713 * 18 17 16 21 21 N 1.30774 * 119.99719 * 161.36157 * 20 18 17 22 22 Si 1.86795 * 120.00215 * 341.36249 * 20 18 17 23 23 H 1.48498 * 109.47673 * 95.22159 * 22 20 18 24 24 H 1.48502 * 109.47438 * 215.22436 * 22 20 18 25 25 H 1.48504 * 109.46955 * 335.22358 * 22 20 18 26 26 C 1.38422 * 119.96642 * 179.97438 * 6 5 4 27 27 H 1.08999 * 109.46666 * 300.00005 * 1 2 3 28 28 H 1.08998 * 109.46725 * 59.99650 * 1 2 3 29 29 H 1.08999 * 109.46966 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.46988 * 239.99905 * 2 1 3 31 31 H 1.08999 * 109.47255 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47652 * 299.99782 * 3 2 1 33 33 H 1.09005 * 109.47331 * 60.00018 * 3 2 1 34 34 H 1.08993 * 109.47065 * 55.00127 * 4 2 1 35 35 H 1.09001 * 109.46843 * 295.00027 * 4 2 1 36 36 H 1.08002 * 119.88617 * 359.97438 * 7 6 5 37 37 H 1.07997 * 120.04204 * 180.28133 * 10 8 7 38 38 H 1.07998 * 119.24834 * 180.31452 * 14 13 12 39 39 H 1.07998 * 120.09556 * 179.72533 * 15 14 13 40 40 H 1.07996 * 120.80112 * 180.27344 * 16 15 14 41 41 H 0.96996 * 119.99532 * 180.02562 * 21 20 18 42 42 H 1.08001 * 120.07787 * 359.97007 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 3.4642 -0.8238 1.1921 6 6 4.0806 -1.4423 2.2334 7 6 3.3275 -1.9406 3.2884 8 6 3.9502 -2.5714 4.3526 9 9 3.2116 -3.0535 5.3760 10 6 5.3247 -2.7141 4.3675 11 6 6.0889 -2.2113 3.3124 12 6 7.5599 -2.3571 3.3266 13 7 8.1996 -2.7294 2.2267 14 6 9.5098 -2.8645 2.1995 15 6 10.2865 -2.6346 3.3275 16 6 9.6898 -2.2478 4.4971 17 6 8.2865 -2.0992 4.5174 18 6 7.6218 -1.7027 5.6946 19 1 6.6963 -1.1497 5.6320 20 6 8.1613 -2.0257 6.9462 21 7 7.7755 -1.3742 8.0124 22 14 9.4320 -3.3871 7.0924 23 1 10.7947 -2.7982 7.0575 24 1 9.2378 -4.1098 8.3751 25 1 9.2735 -4.3356 5.9609 26 6 5.4583 -1.5759 2.2410 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6054 -1.7198 1.2951 35 1 1.7516 -0.1583 2.1370 36 1 2.2527 -1.8352 3.2794 37 1 5.8078 -3.2104 5.1962 38 1 9.9903 -3.1650 1.2802 39 1 11.3586 -2.7564 3.2808 40 1 10.2786 -2.0604 5.3828 41 1 8.1494 -1.5976 8.8791 42 1 6.0441 -1.1896 1.4200 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241075966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:41 Heat of formation + Delta-G solvation = -51.105029 kcal Electronic energy + Delta-G solvation = -25513.703278 eV Core-core repulsion = 21758.418651 eV Total energy + Delta-G solvation = -3755.284627 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.38853 -39.85437 -38.84343 -37.02949 -35.20152 -34.19529 -31.74552 -31.47809 -29.63511 -28.73256 -27.33536 -26.62401 -25.63915 -23.27127 -22.12201 -21.54072 -20.71839 -20.10756 -18.01382 -17.68563 -16.59488 -16.06680 -15.88358 -15.60150 -15.48755 -15.06414 -14.95457 -14.56975 -14.47276 -14.21059 -13.70063 -13.40589 -13.23104 -13.06821 -12.69279 -12.41213 -12.31739 -12.20466 -12.00346 -11.95252 -11.53043 -11.27116 -11.24945 -11.12085 -11.04677 -10.91372 -10.68300 -10.47107 -10.41752 -9.99774 -9.63321 -8.78775 -8.43315 -8.26420 -7.74650 -7.63292 -7.23022 -4.73452 1.46265 1.85363 2.35280 2.59144 2.92050 3.03858 3.13076 3.30975 3.74422 4.14361 4.36114 4.61534 4.66112 4.69368 4.91260 5.12152 5.20622 5.27497 5.30146 5.37841 5.42872 5.48815 5.58980 5.66312 5.73597 5.84322 5.86844 5.88545 5.96606 6.00344 6.09362 6.17649 6.21211 6.46505 6.53516 6.58071 6.63220 6.73878 6.97951 7.10339 7.20863 7.35352 7.45040 7.64873 7.73697 8.04664 8.26786 8.44508 9.26246 9.75173 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.003782 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.122396 B = 7402.044250 C = 8432.083968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.147 4.147 4 C 0.062 3.938 5 O -0.310 6.310 6 C 0.147 3.853 7 C -0.263 4.263 8 C 0.127 3.873 9 F -0.144 7.144 10 C -0.158 4.158 11 C 0.086 3.914 12 C 0.021 3.979 13 N -0.435 5.435 14 C -0.040 4.040 15 C -0.116 4.116 16 C -0.205 4.205 17 C 0.064 3.936 18 C -0.419 4.419 19 H 0.105 0.895 20 C 0.083 3.917 21 N -0.781 5.781 22 Si 0.908 3.092 23 H -0.266 1.266 24 H -0.284 1.284 25 H -0.243 1.243 26 C -0.147 4.147 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.129 0.871 37 H 0.147 0.853 38 H 0.128 0.872 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.291 0.709 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.574 0.977 -8.204 11.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.014 4.014 5 O -0.224 6.224 6 C 0.102 3.898 7 C -0.283 4.283 8 C 0.108 3.892 9 F -0.122 7.122 10 C -0.178 4.178 11 C 0.084 3.916 12 C -0.118 4.118 13 N -0.142 5.142 14 C -0.200 4.200 15 C -0.137 4.137 16 C -0.230 4.230 17 C 0.059 3.941 18 C -0.446 4.446 19 H 0.122 0.878 20 C -0.140 4.140 21 N -0.402 5.402 22 Si 0.733 3.267 23 H -0.192 1.192 24 H -0.211 1.211 25 H -0.166 1.166 26 C -0.167 4.167 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.147 0.853 37 H 0.165 0.835 38 H 0.146 0.854 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.102 0.898 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.026 0.969 -8.795 12.640 hybrid contribution 0.835 -0.423 1.495 1.764 sum -8.191 0.547 -7.300 10.985 Atomic orbital electron populations 1.21783 0.94036 1.02115 1.02359 1.21118 0.95592 0.97054 0.97571 1.21823 1.02253 0.94888 1.01514 1.22867 0.79343 1.00213 0.98927 1.86051 1.21084 1.73832 1.41473 1.18431 0.91715 0.93135 0.86478 1.20929 1.00202 1.10353 0.96771 1.17187 0.89053 0.97756 0.85237 1.91457 1.77044 1.86111 1.57627 1.21325 0.90829 1.04190 1.01484 1.17867 0.91173 0.91592 0.90936 1.19216 0.90589 1.11001 0.91031 1.67033 1.10487 1.08660 1.28034 1.21691 0.89218 1.11406 0.97641 1.21394 0.99273 0.98524 0.94463 1.21134 0.94599 1.09325 0.97954 1.18368 0.91678 0.90276 0.93778 1.19603 1.08575 1.28083 0.88365 0.87770 1.26282 0.95911 0.96508 0.95293 1.69656 1.36362 1.33369 1.00814 0.86347 0.79991 0.81577 0.78743 1.19185 1.21092 1.16596 1.20535 0.90587 1.04764 1.00816 0.92360 0.91855 0.92397 0.90080 0.91596 0.92680 0.92728 0.92175 0.92077 0.85314 0.83509 0.85412 0.87621 0.87116 0.89788 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.19 37.16 0.34 -0.74 16 2 C -0.09 -0.91 3.16 -90.62 -0.29 -1.20 16 3 C -0.15 -1.43 9.09 37.16 0.34 -1.09 16 4 C 0.06 0.73 4.12 37.16 0.15 0.88 16 5 O -0.31 -4.83 9.67 -19.42 -0.19 -5.02 16 6 C 0.15 2.61 6.68 -39.28 -0.26 2.35 16 7 C -0.26 -4.51 9.01 -39.25 -0.35 -4.86 16 8 C 0.13 2.44 7.29 -39.50 -0.29 2.15 16 9 F -0.14 -2.72 17.26 2.25 0.04 -2.68 16 10 C -0.16 -3.35 7.84 -39.07 -0.31 -3.66 16 11 C 0.09 1.86 5.25 -104.93 -0.55 1.31 16 12 C 0.02 0.50 6.43 -82.23 -0.53 -0.02 16 13 N -0.44 -9.97 10.15 -9.17 -0.09 -10.07 16 14 C -0.04 -0.84 11.16 -17.36 -0.19 -1.03 16 15 C -0.12 -2.39 10.03 -39.84 -0.40 -2.79 16 16 C -0.20 -4.65 7.26 -38.98 -0.28 -4.94 16 17 C 0.06 1.56 5.11 -106.41 -0.54 1.01 16 18 C -0.42 -10.46 7.21 -37.89 -0.27 -10.73 16 19 H 0.10 2.76 6.72 -52.49 -0.35 2.40 16 20 C 0.08 2.00 5.42 -17.32 -0.09 1.90 16 21 N -0.78 -19.19 13.93 55.55 0.77 -18.41 16 22 Si 0.91 19.19 24.53 -169.99 -4.17 15.01 16 23 H -0.27 -5.41 6.69 56.52 0.38 -5.03 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.24 -5.33 6.88 56.52 0.39 -4.94 16 26 C -0.15 -2.93 9.60 -39.00 -0.37 -3.30 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.74 7.82 -51.93 -0.41 0.34 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 35 H 0.06 0.69 7.66 -51.93 -0.40 0.30 16 36 H 0.13 1.86 6.28 -52.49 -0.33 1.53 16 37 H 0.15 3.25 6.77 -52.49 -0.36 2.89 16 38 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 39 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.11 2.44 4.77 -52.49 -0.25 2.19 16 41 H 0.29 6.45 8.29 -40.82 -0.34 6.11 16 42 H 0.13 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 349.03 15.07 5.26 5.26 Total: -1.00 -26.40 349.03 -7.75 -34.15 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.46 Total: 6.50 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -3.90 Total: -24.74 kcal Atomic # 7 Polarization: -29.16 SS G_CDS: 0.68 Total: -28.48 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.19 Total: -5.02 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.17 Total: 15.01 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -26.40 -7.75 -34.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241075966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.955 kcal (2) G-P(sol) polarization free energy of solvation -26.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds