Wall clock time and date at job start Tue Mar 31 2020 11:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47029 * 2 1 4 4 C 1.53004 * 109.46923 * 120.00045 * 2 1 3 5 5 O 1.42903 * 109.46971 * 175.00368 * 4 2 1 6 6 C 1.35897 * 116.99796 * 179.97438 * 5 4 2 7 7 C 1.38862 * 119.97031 * 0.02562 * 6 5 4 8 8 C 1.38500 * 120.22728 * 180.02562 * 7 6 5 9 9 F 1.35104 * 119.92027 * 179.97438 * 8 7 6 10 10 C 1.38200 * 120.16217 * 359.69476 * 8 7 6 11 11 C 1.39642 * 119.93028 * 0.53070 * 10 8 7 12 12 C 1.47832 * 120.11782 * 179.76674 * 11 10 8 13 13 N 1.32577 * 119.99151 * 136.00820 * 12 11 10 14 14 C 1.31738 * 121.72093 * 179.71245 * 13 12 11 15 15 C 1.38874 * 121.50128 * 0.58272 * 14 13 12 16 16 C 1.36881 * 119.79879 * 359.45136 * 15 14 13 17 17 C 1.41125 * 118.39742 * 0.25265 * 16 15 14 18 18 C 1.40888 * 120.72133 * 180.02562 * 17 16 15 19 19 H 1.07993 * 119.99952 * 150.78444 * 18 17 16 20 20 C 1.40070 * 119.99751 * 330.78713 * 18 17 16 21 21 N 1.30774 * 119.99719 * 161.36157 * 20 18 17 22 22 Si 1.86795 * 120.00215 * 341.36249 * 20 18 17 23 23 H 1.48498 * 109.47673 * 95.22159 * 22 20 18 24 24 H 1.48502 * 109.47438 * 215.22436 * 22 20 18 25 25 H 1.48504 * 109.46955 * 335.22358 * 22 20 18 26 26 C 1.38422 * 119.96642 * 179.97438 * 6 5 4 27 27 H 1.08999 * 109.46666 * 300.00005 * 1 2 3 28 28 H 1.08998 * 109.46725 * 59.99650 * 1 2 3 29 29 H 1.08999 * 109.46966 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.46988 * 239.99905 * 2 1 3 31 31 H 1.08999 * 109.47255 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47652 * 299.99782 * 3 2 1 33 33 H 1.09005 * 109.47331 * 60.00018 * 3 2 1 34 34 H 1.08993 * 109.47065 * 55.00127 * 4 2 1 35 35 H 1.09001 * 109.46843 * 295.00027 * 4 2 1 36 36 H 1.08002 * 119.88617 * 359.97438 * 7 6 5 37 37 H 1.07997 * 120.04204 * 180.28133 * 10 8 7 38 38 H 1.07998 * 119.24834 * 180.31452 * 14 13 12 39 39 H 1.07998 * 120.09556 * 179.72533 * 15 14 13 40 40 H 1.07996 * 120.80112 * 180.27344 * 16 15 14 41 41 H 0.96996 * 119.99532 * 180.02562 * 21 20 18 42 42 H 1.08001 * 120.07787 * 359.97007 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 3.4642 -0.8238 1.1921 6 6 4.0806 -1.4423 2.2334 7 6 3.3275 -1.9406 3.2884 8 6 3.9502 -2.5714 4.3526 9 9 3.2116 -3.0535 5.3760 10 6 5.3247 -2.7141 4.3675 11 6 6.0889 -2.2113 3.3124 12 6 7.5599 -2.3571 3.3266 13 7 8.1996 -2.7294 2.2267 14 6 9.5098 -2.8645 2.1995 15 6 10.2865 -2.6346 3.3275 16 6 9.6898 -2.2478 4.4971 17 6 8.2865 -2.0992 4.5174 18 6 7.6218 -1.7027 5.6946 19 1 6.6963 -1.1497 5.6320 20 6 8.1613 -2.0257 6.9462 21 7 7.7755 -1.3742 8.0124 22 14 9.4320 -3.3871 7.0924 23 1 10.7947 -2.7982 7.0575 24 1 9.2378 -4.1098 8.3751 25 1 9.2735 -4.3356 5.9609 26 6 5.4583 -1.5759 2.2410 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6054 -1.7198 1.2951 35 1 1.7516 -0.1583 2.1370 36 1 2.2527 -1.8352 3.2794 37 1 5.8078 -3.2104 5.1962 38 1 9.9903 -3.1650 1.2802 39 1 11.3586 -2.7564 3.2808 40 1 10.2786 -2.0604 5.3828 41 1 8.1494 -1.5976 8.8791 42 1 6.0441 -1.1896 1.4200 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241075966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:40 Heat of formation + Delta-G solvation = -63.789907 kcal Electronic energy + Delta-G solvation = -25514.253335 eV Core-core repulsion = 21758.418651 eV Total energy + Delta-G solvation = -3755.834685 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.93375 -41.26901 -40.44390 -38.39706 -36.17360 -35.94809 -33.38696 -33.21821 -31.12248 -30.32306 -28.05040 -27.82062 -27.19342 -24.86955 -23.71303 -23.15267 -22.17581 -21.08904 -19.50417 -19.44765 -17.99521 -17.55576 -17.20705 -17.07923 -17.02119 -16.58296 -16.52160 -16.20746 -15.64595 -15.35068 -15.12056 -14.95467 -14.66069 -14.32880 -13.99855 -13.93219 -13.81771 -13.43324 -13.26907 -13.15990 -12.94093 -12.79058 -12.56532 -12.55447 -12.13577 -12.08513 -12.00930 -11.78308 -11.58768 -11.48537 -11.39173 -10.43074 -10.13960 -9.99877 -9.32987 -9.22044 -9.01167 -6.57996 -0.12556 0.29648 0.65641 0.86995 1.21243 1.35774 1.43372 2.02864 2.11281 2.52767 2.63480 3.16117 3.50137 3.57729 3.81685 3.88549 3.93512 4.05257 4.12823 4.23999 4.27328 4.33727 4.41114 4.45177 4.53646 4.58152 4.67936 4.76180 4.81729 4.95151 4.99434 5.00884 5.02367 5.05108 5.10624 5.21240 5.30984 5.39576 5.42145 5.44866 5.59715 5.71170 5.76492 5.90088 6.18573 6.38742 6.50115 6.60486 7.52251 8.02193 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.003782 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.122396 B = 7402.044250 C = 8432.083968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 C -0.148 4.148 4 C 0.049 3.951 5 O -0.315 6.315 6 C 0.160 3.840 7 C -0.247 4.247 8 C 0.123 3.877 9 F -0.143 7.143 10 C -0.175 4.175 11 C 0.064 3.936 12 C 0.007 3.993 13 N -0.454 5.454 14 C -0.032 4.032 15 C -0.113 4.113 16 C -0.217 4.217 17 C 0.047 3.953 18 C -0.444 4.444 19 H 0.072 0.928 20 C 0.053 3.947 21 N -0.820 5.820 22 Si 0.956 3.044 23 H -0.247 1.247 24 H -0.273 1.273 25 H -0.258 1.258 26 C -0.155 4.155 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.163 0.837 37 H 0.125 0.875 38 H 0.166 0.834 39 H 0.150 0.850 40 H 0.117 0.883 41 H 0.300 0.700 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.775 0.580 -9.954 13.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.025 4.025 5 O -0.229 6.229 6 C 0.114 3.886 7 C -0.266 4.266 8 C 0.104 3.896 9 F -0.121 7.121 10 C -0.195 4.195 11 C 0.063 3.937 12 C -0.131 4.131 13 N -0.161 5.161 14 C -0.192 4.192 15 C -0.133 4.133 16 C -0.243 4.243 17 C 0.042 3.958 18 C -0.472 4.472 19 H 0.090 0.910 20 C -0.165 4.165 21 N -0.443 5.443 22 Si 0.779 3.221 23 H -0.172 1.172 24 H -0.199 1.199 25 H -0.182 1.182 26 C -0.175 4.175 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.181 0.819 37 H 0.143 0.857 38 H 0.183 0.817 39 H 0.167 0.833 40 H 0.134 0.866 41 H 0.111 0.889 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.248 0.588 -10.545 14.038 hybrid contribution 0.833 -0.271 1.788 1.991 sum -8.415 0.317 -8.757 12.149 Atomic orbital electron populations 1.21766 0.91962 1.02890 1.03229 1.21157 0.97130 0.96454 0.96296 1.21833 1.00862 0.95378 1.02489 1.23284 0.77076 1.01575 1.00583 1.86077 1.23484 1.72992 1.40367 1.18348 0.91118 0.92230 0.86936 1.21171 1.01790 1.08400 0.95276 1.17251 0.88445 0.98018 0.85873 1.91454 1.76773 1.86150 1.57744 1.21177 0.91899 1.05362 1.01068 1.17911 0.90825 0.93007 0.91941 1.19526 0.91649 1.10833 0.91137 1.67131 1.11711 1.09408 1.27870 1.22471 0.88732 1.08822 0.99210 1.21830 1.01541 0.96771 0.93154 1.21365 0.94011 1.09601 0.99308 1.18562 0.92777 0.90645 0.93787 1.19412 1.08224 1.29951 0.89602 0.90991 1.26844 0.97287 0.97764 0.94651 1.69670 1.38213 1.34967 1.01481 0.85627 0.78983 0.79095 0.78427 1.17212 1.19921 1.18164 1.20509 0.91811 1.04972 1.00214 0.91913 0.90621 0.91692 0.90280 0.93746 0.91061 0.92487 0.90756 0.91292 0.81913 0.85661 0.81683 0.83273 0.86576 0.88918 0.85234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.19 71.98 0.66 -1.01 16 2 C -0.09 -1.56 3.16 -10.79 -0.03 -1.59 16 3 C -0.15 -2.63 9.09 71.98 0.65 -1.97 16 4 C 0.05 1.05 4.12 71.98 0.30 1.34 16 5 O -0.32 -9.40 9.67 -92.39 -0.89 -10.30 16 6 C 0.16 5.55 6.68 22.46 0.15 5.70 16 7 C -0.25 -8.19 9.01 22.48 0.20 -7.99 16 8 C 0.12 4.81 7.29 22.32 0.16 4.97 16 9 F -0.14 -5.43 17.26 44.97 0.78 -4.65 16 10 C -0.18 -7.79 7.84 22.60 0.18 -7.61 16 11 C 0.06 2.91 5.25 -20.06 -0.11 2.81 16 12 C 0.01 0.33 6.43 42.47 0.27 0.60 16 13 N -0.45 -20.59 10.15 -182.92 -1.86 -22.44 16 14 C -0.03 -1.27 11.16 84.86 0.95 -0.33 16 15 C -0.11 -4.35 10.03 22.10 0.22 -4.12 16 16 C -0.22 -9.71 7.26 22.66 0.16 -9.54 16 17 C 0.05 2.35 5.11 -21.02 -0.11 2.24 16 18 C -0.44 -23.39 7.21 23.36 0.17 -23.22 16 19 H 0.07 4.13 6.72 -2.91 -0.02 4.11 16 20 C 0.05 2.67 5.42 85.30 0.46 3.13 16 21 N -0.82 -41.93 13.93 21.85 0.30 -41.62 16 22 Si 0.96 39.68 24.53 68.60 1.68 41.36 16 23 H -0.25 -9.43 6.69 99.48 0.67 -8.77 16 24 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 25 H -0.26 -11.19 6.88 99.48 0.68 -10.51 16 26 C -0.16 -6.28 9.60 22.65 0.22 -6.07 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 31 H 0.04 0.97 7.82 -2.39 -0.02 0.95 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.07 1.40 7.66 -2.39 -0.02 1.38 16 35 H 0.07 1.38 7.66 -2.39 -0.02 1.36 16 36 H 0.16 4.23 6.28 -2.91 -0.02 4.21 16 37 H 0.13 6.02 6.77 -2.91 -0.02 6.00 16 38 H 0.17 5.17 8.06 -2.91 -0.02 5.15 16 39 H 0.15 4.38 8.06 -2.91 -0.02 4.36 16 40 H 0.12 4.99 4.77 -2.91 -0.01 4.97 16 41 H 0.30 13.68 8.29 -92.71 -0.77 12.91 16 42 H 0.13 5.21 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -59.10 349.03 5.50 -53.60 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.97 Total: 26.70 kcal Atomic # 6 Polarization: -47.17 SS G_CDS: 4.51 Total: -42.65 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: -1.55 Total: -64.06 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.89 Total: -10.30 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.78 Total: -4.65 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 1.68 Total: 41.36 kcal Total: -59.10 5.50 -53.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241075966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.188 kcal (2) G-P(sol) polarization free energy of solvation -59.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds