Wall clock time and date at job start Tue Mar 31 2020 11:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47299 * 2 1 4 4 C 1.53004 * 109.47057 * 119.99615 * 2 1 3 5 5 O 1.42898 * 109.47042 * 175.00376 * 4 2 1 6 6 C 1.35902 * 116.99841 * 179.97438 * 5 4 2 7 7 C 1.38860 * 119.96973 * 0.02562 * 6 5 4 8 8 C 1.38496 * 120.21320 * 179.97438 * 7 6 5 9 9 F 1.35096 * 119.92192 * 179.97438 * 8 7 6 10 10 C 1.38217 * 120.15137 * 359.97438 * 8 7 6 11 11 C 1.39576 * 119.94241 * 0.02562 * 10 8 7 12 12 C 1.47968 * 120.10807 * 179.97438 * 11 10 8 13 13 C 1.39886 * 119.45299 * 4.97789 * 12 11 10 14 14 C 1.36604 * 119.47010 * 180.02562 * 13 12 11 15 15 C 1.41299 * 118.41749 * 0.02562 * 14 13 12 16 16 C 1.41050 * 120.55896 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00031 * 203.67485 * 16 15 14 18 18 C 1.40023 * 120.00081 * 23.66744 * 16 15 14 19 19 N 1.30788 * 120.00022 * 17.65682 * 18 16 15 20 20 Si 1.86802 * 119.99960 * 197.64732 * 18 16 15 21 21 H 1.48500 * 109.47311 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46824 * 120.00485 * 20 18 16 23 23 H 1.48500 * 109.47269 * 240.00204 * 20 18 16 24 24 C 1.40951 * 118.88721 * 359.97438 * 15 14 13 25 25 N 1.31269 * 120.40547 * 0.02562 * 24 15 14 26 26 C 1.38436 * 119.97358 * 180.25517 * 6 5 4 27 27 H 1.08996 * 109.47917 * 300.00521 * 1 2 3 28 28 H 1.08999 * 109.46944 * 60.00553 * 1 2 3 29 29 H 1.08999 * 109.47027 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47908 * 239.99992 * 2 1 3 31 31 H 1.08998 * 109.47086 * 299.99953 * 3 2 1 32 32 H 1.09005 * 109.47294 * 59.98951 * 3 2 1 33 33 H 1.08999 * 109.47861 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46742 * 54.99968 * 4 2 1 35 35 H 1.09006 * 109.46869 * 295.00208 * 4 2 1 36 36 H 1.07994 * 119.89029 * 0.02562 * 7 6 5 37 37 H 1.08007 * 120.02947 * 179.97438 * 10 8 7 38 38 H 1.07998 * 120.26575 * 0.04579 * 13 12 11 39 39 H 1.08004 * 120.79594 * 180.02562 * 14 13 12 40 40 H 0.97001 * 120.00067 * 180.02562 * 19 18 16 41 41 H 1.08001 * 119.79821 * 180.27646 * 24 15 14 42 42 H 1.08003 * 120.07278 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 3.4641 -0.8237 1.1921 6 6 4.0804 -1.4421 2.2336 7 6 3.3274 -1.9403 3.2885 8 6 3.9503 -2.5720 4.3521 9 9 3.2120 -3.0540 5.3757 10 6 5.3254 -2.7102 4.3688 11 6 6.0885 -2.2118 3.3117 12 6 7.5610 -2.3573 3.3260 13 6 8.1701 -3.0877 4.3518 14 6 9.5294 -3.2218 4.3656 15 6 10.2759 -2.6109 3.3331 16 6 11.6818 -2.7210 3.3030 17 1 12.2704 -1.9809 2.7813 18 6 12.3144 -3.7898 3.9496 19 7 11.6284 -4.8538 4.2782 20 14 14.1382 -3.6961 4.3428 21 1 14.6802 -2.3965 3.8711 22 1 14.3346 -3.8106 5.8103 23 1 14.8494 -4.8067 3.6601 24 6 9.5920 -1.8906 2.3330 25 7 8.2835 -1.7904 2.3636 26 6 5.4588 -1.5706 2.2440 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6053 -1.7197 1.2952 35 1 1.7515 -0.1581 2.1370 36 1 2.2526 -1.8357 3.2792 37 1 5.8092 -3.2027 5.1994 38 1 7.5704 -3.5423 5.1265 39 1 10.0220 -3.7814 5.1471 40 1 12.0665 -5.5940 4.7265 41 1 10.1477 -1.4215 1.5345 42 1 6.0450 -1.1796 1.4256 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241076542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:45 Heat of formation + Delta-G solvation = -56.258419 kcal Electronic energy + Delta-G solvation = -24613.675496 eV Core-core repulsion = 20858.167401 eV Total energy + Delta-G solvation = -3755.508095 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.62568 -39.92195 -38.64386 -37.12327 -35.30318 -34.32743 -31.44728 -30.93585 -29.70070 -28.97183 -27.38855 -26.71612 -25.59013 -22.95149 -22.54122 -21.19361 -20.79823 -20.16881 -18.09276 -17.61486 -16.67921 -16.10088 -15.90315 -15.76371 -15.36195 -15.26256 -14.94905 -14.52702 -14.33418 -14.24216 -13.85395 -13.45212 -13.16195 -12.83761 -12.75853 -12.46546 -12.23329 -12.08444 -11.90657 -11.83790 -11.53576 -11.36914 -11.32203 -11.22281 -11.14613 -10.95326 -10.76215 -10.70302 -10.54271 -10.02374 -9.61972 -8.78317 -8.44881 -8.19332 -7.93462 -7.47079 -7.10494 -4.67233 1.30805 1.67355 2.54622 2.86340 2.89874 2.94683 3.05165 3.22453 3.65707 4.00305 4.49269 4.51457 4.55671 4.60964 4.85491 5.05373 5.14319 5.21365 5.30804 5.33024 5.40330 5.46572 5.53264 5.61039 5.68567 5.77469 5.80930 5.84340 5.94941 6.05000 6.12803 6.26490 6.42633 6.54129 6.54561 6.61818 6.73258 6.81894 7.00259 7.05613 7.16449 7.55723 7.63764 7.66175 7.77730 8.20810 8.39051 8.49668 9.44756 9.75428 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022464 B = 0.002588 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.144376 B =10818.462864 C =11892.604128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.147 4.147 4 C 0.062 3.938 5 O -0.309 6.309 6 C 0.157 3.843 7 C -0.277 4.277 8 C 0.137 3.863 9 F -0.145 7.145 10 C -0.205 4.205 11 C 0.089 3.911 12 C -0.021 4.021 13 C -0.113 4.113 14 C -0.148 4.148 15 C 0.071 3.929 16 C -0.425 4.425 17 H 0.090 0.910 18 C 0.070 3.930 19 N -0.769 5.769 20 Si 0.917 3.083 21 H -0.256 1.256 22 H -0.268 1.268 23 H -0.270 1.270 24 C -0.014 4.014 25 N -0.440 5.440 26 C -0.157 4.157 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.103 0.897 39 H 0.128 0.872 40 H 0.289 0.711 41 H 0.132 0.868 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.457 4.883 -2.776 14.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.013 4.013 5 O -0.222 6.222 6 C 0.112 3.888 7 C -0.297 4.297 8 C 0.118 3.882 9 F -0.124 7.124 10 C -0.225 4.225 11 C 0.088 3.912 12 C -0.153 4.153 13 C -0.133 4.133 14 C -0.173 4.173 15 C 0.066 3.934 16 C -0.453 4.453 17 H 0.108 0.892 18 C -0.152 4.152 19 N -0.392 5.392 20 Si 0.740 3.260 21 H -0.179 1.179 22 H -0.193 1.193 23 H -0.195 1.195 24 C -0.181 4.181 25 N -0.147 5.147 26 C -0.176 4.176 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.147 0.853 37 H 0.152 0.848 38 H 0.121 0.879 39 H 0.146 0.854 40 H 0.100 0.900 41 H 0.149 0.851 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.836 5.155 -3.434 15.160 hybrid contribution 0.885 -0.880 1.306 1.806 sum -12.951 4.275 -2.129 13.804 Atomic orbital electron populations 1.21778 0.94007 1.02122 1.02371 1.21124 0.95605 0.97089 0.97571 1.21823 1.02298 0.94842 1.01512 1.22877 0.79277 1.00221 0.98953 1.86075 1.21134 1.73627 1.41403 1.18541 0.91833 0.92239 0.86169 1.20878 1.00232 1.11492 0.97112 1.17133 0.88873 0.97048 0.85125 1.91450 1.77185 1.86121 1.57645 1.21036 0.91328 1.08188 1.01975 1.18170 0.91820 0.90618 0.90582 1.18543 0.90149 1.08503 0.98119 1.21301 0.95691 0.98409 0.97890 1.21329 0.92361 1.03819 0.99764 1.18664 0.94342 0.90145 0.90280 1.19791 0.91770 1.07123 1.26599 0.89190 1.26151 1.01938 0.94084 0.92982 1.69786 1.39134 1.03604 1.26649 0.86094 0.80630 0.79978 0.79264 1.17896 1.19305 1.19534 1.22475 0.88881 1.06977 0.99764 1.66897 1.08479 1.16283 1.23030 1.20547 0.90339 1.05240 1.01477 0.92399 0.91800 0.92398 0.90006 0.92621 0.92792 0.91539 0.92164 0.92121 0.85325 0.84777 0.87899 0.85423 0.90015 0.85069 0.83950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.19 37.15 0.34 -0.66 16 2 C -0.10 -0.87 3.16 -90.62 -0.29 -1.15 16 3 C -0.15 -1.34 9.09 37.16 0.34 -1.01 16 4 C 0.06 0.69 4.12 37.16 0.15 0.84 16 5 O -0.31 -4.60 9.67 -19.43 -0.19 -4.79 16 6 C 0.16 2.64 6.68 -39.28 -0.26 2.37 16 7 C -0.28 -4.35 9.01 -39.26 -0.35 -4.70 16 8 C 0.14 2.33 7.29 -39.49 -0.29 2.04 16 9 F -0.15 -2.36 17.26 2.25 0.04 -2.32 16 10 C -0.21 -3.77 9.39 -39.09 -0.37 -4.13 16 11 C 0.09 1.82 5.87 -104.92 -0.62 1.20 16 12 C -0.02 -0.47 6.73 -82.75 -0.56 -1.03 16 13 C -0.11 -2.57 9.37 -39.56 -0.37 -2.94 16 14 C -0.15 -3.62 8.74 -39.01 -0.34 -3.96 16 15 C 0.07 1.76 5.59 -106.64 -0.60 1.16 16 16 C -0.42 -10.14 9.06 -37.85 -0.34 -10.48 16 17 H 0.09 2.02 7.91 -52.48 -0.41 1.60 16 18 C 0.07 1.58 5.17 -17.33 -0.09 1.49 16 19 N -0.77 -18.00 10.92 55.55 0.61 -17.39 16 20 Si 0.92 16.69 29.60 -169.99 -5.03 11.66 16 21 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 22 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 23 H -0.27 -4.87 7.11 56.52 0.40 -4.46 16 24 C -0.01 -0.34 10.97 -16.77 -0.18 -0.52 16 25 N -0.44 -10.53 9.40 -9.10 -0.09 -10.62 16 26 C -0.16 -2.99 9.51 -39.02 -0.37 -3.37 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.72 7.82 -51.93 -0.41 0.31 16 34 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 35 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 36 H 0.13 1.69 6.28 -52.49 -0.33 1.36 16 37 H 0.13 2.33 6.18 -52.48 -0.32 2.00 16 38 H 0.10 2.07 6.18 -52.49 -0.32 1.75 16 39 H 0.13 3.14 6.19 -52.48 -0.32 2.81 16 40 H 0.29 6.05 8.30 -40.82 -0.34 5.71 16 41 H 0.13 2.86 8.06 -52.49 -0.42 2.44 16 42 H 0.14 2.82 7.53 -52.48 -0.40 2.43 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -26.02 355.71 -8.90 -34.92 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.41 Total: 8.02 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -4.19 Total: -24.84 kcal Atomic # 7 Polarization: -28.53 SS G_CDS: 0.52 Total: -28.01 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.19 Total: -4.79 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.66 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -26.02 -8.90 -34.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241076542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.342 kcal (2) G-P(sol) polarization free energy of solvation -26.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds