Wall clock time and date at job start Tue Mar 31 2020 11:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47299 * 2 1 4 4 C 1.53004 * 109.47057 * 119.99615 * 2 1 3 5 5 O 1.42898 * 109.47042 * 175.00376 * 4 2 1 6 6 C 1.35902 * 116.99841 * 179.97438 * 5 4 2 7 7 C 1.38860 * 119.96973 * 0.02562 * 6 5 4 8 8 C 1.38496 * 120.21320 * 179.97438 * 7 6 5 9 9 F 1.35096 * 119.92192 * 179.97438 * 8 7 6 10 10 C 1.38217 * 120.15137 * 359.97438 * 8 7 6 11 11 C 1.39576 * 119.94241 * 0.02562 * 10 8 7 12 12 C 1.47968 * 120.10807 * 179.97438 * 11 10 8 13 13 C 1.39886 * 119.45299 * 4.97789 * 12 11 10 14 14 C 1.36604 * 119.47010 * 180.02562 * 13 12 11 15 15 C 1.41299 * 118.41749 * 0.02562 * 14 13 12 16 16 C 1.41050 * 120.55896 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00031 * 203.67485 * 16 15 14 18 18 C 1.40023 * 120.00081 * 23.66744 * 16 15 14 19 19 N 1.30788 * 120.00022 * 17.65682 * 18 16 15 20 20 Si 1.86802 * 119.99960 * 197.64732 * 18 16 15 21 21 H 1.48500 * 109.47311 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46824 * 120.00485 * 20 18 16 23 23 H 1.48500 * 109.47269 * 240.00204 * 20 18 16 24 24 C 1.40951 * 118.88721 * 359.97438 * 15 14 13 25 25 N 1.31269 * 120.40547 * 0.02562 * 24 15 14 26 26 C 1.38436 * 119.97358 * 180.25517 * 6 5 4 27 27 H 1.08996 * 109.47917 * 300.00521 * 1 2 3 28 28 H 1.08999 * 109.46944 * 60.00553 * 1 2 3 29 29 H 1.08999 * 109.47027 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47908 * 239.99992 * 2 1 3 31 31 H 1.08998 * 109.47086 * 299.99953 * 3 2 1 32 32 H 1.09005 * 109.47294 * 59.98951 * 3 2 1 33 33 H 1.08999 * 109.47861 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46742 * 54.99968 * 4 2 1 35 35 H 1.09006 * 109.46869 * 295.00208 * 4 2 1 36 36 H 1.07994 * 119.89029 * 0.02562 * 7 6 5 37 37 H 1.08007 * 120.02947 * 179.97438 * 10 8 7 38 38 H 1.07998 * 120.26575 * 0.04579 * 13 12 11 39 39 H 1.08004 * 120.79594 * 180.02562 * 14 13 12 40 40 H 0.97001 * 120.00067 * 180.02562 * 19 18 16 41 41 H 1.08001 * 119.79821 * 180.27646 * 24 15 14 42 42 H 1.08003 * 120.07278 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 3.4641 -0.8237 1.1921 6 6 4.0804 -1.4421 2.2336 7 6 3.3274 -1.9403 3.2885 8 6 3.9503 -2.5720 4.3521 9 9 3.2120 -3.0540 5.3757 10 6 5.3254 -2.7102 4.3688 11 6 6.0885 -2.2118 3.3117 12 6 7.5610 -2.3573 3.3260 13 6 8.1701 -3.0877 4.3518 14 6 9.5294 -3.2218 4.3656 15 6 10.2759 -2.6109 3.3331 16 6 11.6818 -2.7210 3.3030 17 1 12.2704 -1.9809 2.7813 18 6 12.3144 -3.7898 3.9496 19 7 11.6284 -4.8538 4.2782 20 14 14.1382 -3.6961 4.3428 21 1 14.6802 -2.3965 3.8711 22 1 14.3346 -3.8106 5.8103 23 1 14.8494 -4.8067 3.6601 24 6 9.5920 -1.8906 2.3330 25 7 8.2835 -1.7904 2.3636 26 6 5.4588 -1.5706 2.2440 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6053 -1.7197 1.2952 35 1 1.7515 -0.1581 2.1370 36 1 2.2526 -1.8357 3.2792 37 1 5.8092 -3.2027 5.1994 38 1 7.5704 -3.5423 5.1265 39 1 10.0220 -3.7814 5.1471 40 1 12.0665 -5.5940 4.7265 41 1 10.1477 -1.4215 1.5345 42 1 6.0450 -1.1796 1.4256 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241076542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:44 Heat of formation + Delta-G solvation = -66.770872 kcal Electronic energy + Delta-G solvation = -24614.131350 eV Core-core repulsion = 20858.167401 eV Total energy + Delta-G solvation = -3755.963949 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.95486 -41.22218 -40.29500 -38.44697 -36.28633 -35.94069 -33.04479 -32.72266 -31.13165 -30.53976 -28.06407 -27.79891 -27.10831 -24.55344 -24.07452 -22.77112 -22.25824 -21.08647 -19.47885 -19.35715 -17.91405 -17.48457 -17.23286 -17.13662 -16.84373 -16.53698 -16.39091 -16.02332 -15.59673 -15.49931 -15.12734 -14.62697 -14.56033 -14.28922 -13.97472 -13.67056 -13.60974 -13.41672 -13.27418 -13.09303 -12.91726 -12.84216 -12.61080 -12.37385 -12.24402 -12.11408 -12.00969 -11.73414 -11.60823 -11.52824 -11.27032 -10.34278 -10.27135 -10.01896 -9.31104 -9.15396 -8.80636 -6.48942 -0.19272 0.26333 0.88948 1.08303 1.39293 1.51762 1.56076 2.12036 2.14117 2.45847 2.83707 3.13009 3.59971 3.70157 3.78986 3.87265 3.93311 3.99870 4.12192 4.27510 4.29948 4.32392 4.46175 4.54910 4.59714 4.67948 4.74048 4.81270 4.94738 4.98911 5.01256 5.01727 5.03729 5.10944 5.15245 5.21613 5.28679 5.38588 5.41964 5.52389 5.63744 5.80814 5.87744 5.96241 6.39267 6.40745 6.61011 6.68244 7.61760 8.09481 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022464 B = 0.002588 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.144376 B =10818.462864 C =11892.604128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 C -0.148 4.148 4 C 0.051 3.949 5 O -0.319 6.319 6 C 0.165 3.835 7 C -0.257 4.257 8 C 0.140 3.860 9 F -0.137 7.137 10 C -0.207 4.207 11 C 0.066 3.934 12 C -0.027 4.027 13 C -0.117 4.117 14 C -0.166 4.166 15 C 0.045 3.955 16 C -0.453 4.453 17 H 0.095 0.905 18 C 0.033 3.967 19 N -0.801 5.801 20 Si 0.993 3.007 21 H -0.253 1.253 22 H -0.262 1.262 23 H -0.263 1.263 24 C -0.034 4.034 25 N -0.453 5.453 26 C -0.168 4.168 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.163 0.837 37 H 0.140 0.860 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.298 0.702 41 H 0.143 0.857 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.415 5.068 -2.472 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.024 4.024 5 O -0.233 6.233 6 C 0.119 3.881 7 C -0.277 4.277 8 C 0.121 3.879 9 F -0.116 7.116 10 C -0.227 4.227 11 C 0.065 3.935 12 C -0.160 4.160 13 C -0.137 4.137 14 C -0.191 4.191 15 C 0.040 3.960 16 C -0.480 4.480 17 H 0.113 0.887 18 C -0.186 4.186 19 N -0.424 5.424 20 Si 0.812 3.188 21 H -0.176 1.176 22 H -0.187 1.187 23 H -0.188 1.188 24 C -0.199 4.199 25 N -0.160 5.160 26 C -0.188 4.188 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.180 0.820 37 H 0.158 0.842 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.109 0.891 41 H 0.160 0.840 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.815 5.349 -3.147 16.989 hybrid contribution 1.200 -0.897 1.154 1.891 sum -14.615 4.452 -1.993 15.408 Atomic orbital electron populations 1.21757 0.91891 1.02874 1.03269 1.21164 0.97186 0.96505 0.96376 1.21828 1.00808 0.95350 1.02534 1.23274 0.76986 1.01545 1.00557 1.86097 1.23569 1.72960 1.40631 1.18434 0.91079 0.91738 0.86845 1.21167 1.01803 1.09122 0.95567 1.17110 0.88361 0.96874 0.85561 1.91475 1.76792 1.85979 1.57358 1.21075 0.92129 1.08003 1.01529 1.18087 0.90569 0.92748 0.92144 1.19032 0.91727 1.07664 0.97612 1.21543 0.95413 0.98269 0.98507 1.21378 0.93176 1.04599 0.99900 1.18959 0.95294 0.90903 0.90823 1.20056 0.91710 1.08168 1.28110 0.88664 1.27020 1.06428 0.93085 0.92039 1.69814 1.41232 1.04346 1.26986 0.84984 0.74666 0.80056 0.79104 1.17565 1.18686 1.18806 1.22708 0.89223 1.07723 1.00288 1.66940 1.08522 1.16873 1.23655 1.20477 0.91713 1.05674 1.00932 0.91680 0.90786 0.91731 0.90641 0.91247 0.92210 0.93840 0.90799 0.90880 0.81972 0.84198 0.85568 0.86121 0.89060 0.83960 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.19 71.98 0.66 -0.83 16 2 C -0.09 -1.48 3.16 -10.79 -0.03 -1.52 16 3 C -0.15 -2.45 9.09 71.98 0.65 -1.79 16 4 C 0.05 0.98 4.12 71.98 0.30 1.27 16 5 O -0.32 -8.99 9.67 -92.45 -0.89 -9.89 16 6 C 0.17 5.27 6.68 22.47 0.15 5.42 16 7 C -0.26 -7.27 9.01 22.48 0.20 -7.07 16 8 C 0.14 4.40 7.29 22.33 0.16 4.57 16 9 F -0.14 -4.05 17.26 44.97 0.78 -3.28 16 10 C -0.21 -7.40 9.39 22.59 0.21 -7.19 16 11 C 0.07 2.69 5.87 -20.06 -0.12 2.57 16 12 C -0.03 -1.27 6.73 41.94 0.28 -0.98 16 13 C -0.12 -5.49 9.37 22.29 0.21 -5.28 16 14 C -0.17 -8.41 8.74 22.64 0.20 -8.21 16 15 C 0.05 2.34 5.59 -21.17 -0.12 2.22 16 16 C -0.45 -22.30 9.06 23.39 0.21 -22.08 16 17 H 0.10 4.40 7.91 -2.91 -0.02 4.38 16 18 C 0.03 1.51 5.17 85.28 0.44 1.95 16 19 N -0.80 -38.20 10.92 21.84 0.24 -37.96 16 20 Si 0.99 34.11 29.60 68.60 2.03 36.14 16 21 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 22 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 23 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 24 C -0.03 -1.70 10.97 85.44 0.94 -0.77 16 25 N -0.45 -22.53 9.40 -182.70 -1.72 -24.25 16 26 C -0.17 -6.47 9.51 22.64 0.22 -6.25 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.04 0.91 7.82 -2.39 -0.02 0.89 16 34 H 0.07 1.24 7.66 -2.39 -0.02 1.22 16 35 H 0.07 1.25 7.66 -2.38 -0.02 1.23 16 36 H 0.16 3.49 6.28 -2.91 -0.02 3.47 16 37 H 0.14 4.72 6.18 -2.91 -0.02 4.71 16 38 H 0.13 5.12 6.18 -2.91 -0.02 5.10 16 39 H 0.12 6.18 6.19 -2.91 -0.02 6.16 16 40 H 0.30 12.61 8.30 -92.71 -0.77 11.84 16 41 H 0.14 6.53 8.06 -2.91 -0.02 6.50 16 42 H 0.13 5.20 7.53 -2.91 -0.02 5.18 16 Total: -1.00 -57.40 355.71 6.04 -51.36 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 1.04 Total: 31.84 kcal Atomic # 6 Polarization: -48.53 SS G_CDS: 4.56 Total: -43.96 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -1.48 Total: -62.21 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.89 Total: -9.89 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.78 Total: -3.28 kcal Atomic # 14 Polarization: 34.11 SS G_CDS: 2.03 Total: 36.14 kcal Total: -57.40 6.04 -51.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241076542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.414 kcal (2) G-P(sol) polarization free energy of solvation -57.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds