Wall clock time and date at job start Tue Mar 31 2020 11:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46779 * 2 1 4 4 C 1.52994 * 109.47171 * 239.99727 * 2 1 3 5 5 O 1.42901 * 109.47114 * 119.99431 * 2 1 3 6 6 C 1.35553 * 116.99627 * 60.00296 * 5 2 1 7 7 N 1.32144 * 119.79755 * 359.97438 * 6 5 2 8 8 C 1.31959 * 121.79966 * 179.97438 * 7 6 5 9 9 C 1.38313 * 121.17341 * 0.02562 * 8 7 6 10 10 C 1.38419 * 119.44246 * 359.97438 * 9 8 7 11 11 C 1.39880 * 118.35480 * 359.97438 * 10 9 8 12 12 C 1.47820 * 120.59106 * 179.97438 * 11 10 9 13 13 C 1.40007 * 119.90292 * 65.00164 * 12 11 10 14 14 C 1.36197 * 120.13706 * 179.97438 * 13 12 11 15 15 C 1.40988 * 119.93211 * 359.97438 * 14 13 12 16 16 C 1.40997 * 120.09576 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99435 * 204.72579 * 16 15 14 18 18 C 1.39968 * 119.99995 * 24.73117 * 16 15 14 19 19 N 1.30824 * 120.00085 * 17.99487 * 18 16 15 20 20 Si 1.86802 * 120.00075 * 197.99139 * 18 16 15 21 21 H 1.48504 * 109.46948 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47269 * 119.99868 * 20 18 16 23 23 H 1.48497 * 109.47104 * 240.00214 * 20 18 16 24 24 C 1.40886 * 119.80355 * 359.97438 * 15 14 13 25 25 C 1.36435 * 119.86316 * 359.74151 * 24 15 14 26 26 F 1.35103 * 119.96881 * 180.27127 * 25 24 15 27 27 H 1.08997 * 109.47001 * 300.00311 * 1 2 3 28 28 H 1.08999 * 109.46841 * 60.00244 * 1 2 3 29 29 H 1.08995 * 109.46614 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46792 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46736 * 299.99487 * 3 2 1 32 32 H 1.08991 * 109.47279 * 59.99778 * 3 2 1 33 33 H 1.09003 * 109.47540 * 299.99834 * 4 2 1 34 34 H 1.09003 * 109.47486 * 59.99814 * 4 2 1 35 35 H 1.09002 * 109.47265 * 179.97438 * 4 2 1 36 36 H 1.08002 * 119.41284 * 180.28144 * 8 7 6 37 37 H 1.07989 * 120.27809 * 180.02562 * 9 8 7 38 38 H 1.08003 * 120.81848 * 180.02562 * 10 9 8 39 39 H 1.08007 * 119.93030 * 359.97438 * 13 12 11 40 40 H 1.07998 * 120.03057 * 180.02562 * 14 13 12 41 41 H 0.97003 * 119.99908 * 180.02562 * 19 18 16 42 42 H 1.08009 * 120.06832 * 179.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0064 -0.6735 1.1668 6 6 1.6422 -1.9701 1.3207 7 7 0.8794 -2.5503 0.4109 8 6 0.5019 -3.8100 0.5207 9 6 0.8905 -4.5823 1.6003 10 6 1.6901 -4.0247 2.5831 11 6 2.0784 -2.6881 2.4445 12 6 2.9314 -2.0429 3.4649 13 6 4.2419 -2.4932 3.6653 14 6 5.0321 -1.9018 4.6038 15 6 4.5297 -0.8336 5.3747 16 6 5.3446 -0.2193 6.3476 17 1 4.8934 0.2913 7.1855 18 6 6.7381 -0.2711 6.2273 19 7 7.2848 -0.5627 5.0751 20 14 7.8173 0.0764 7.7119 21 1 6.9606 0.3792 8.8866 22 1 8.6557 -1.1140 8.0039 23 1 8.6933 1.2407 7.4255 24 6 3.2110 -0.3819 5.1700 25 6 2.4284 -0.9765 4.2236 26 9 1.1654 -0.5414 4.0218 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6768 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7209 -1.2494 36 1 -0.1182 -4.2468 -0.2481 37 1 0.5735 -5.6119 1.6755 38 1 2.0069 -4.6076 3.4353 39 1 4.6269 -3.3112 3.0744 40 1 6.0428 -2.2503 4.7567 41 1 8.2506 -0.5990 4.9919 42 1 2.8215 0.4358 5.7585 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241143669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:38 Heat of formation + Delta-G solvation = -32.783183 kcal Electronic energy + Delta-G solvation = -26522.488765 eV Core-core repulsion = 22767.998633 eV Total energy + Delta-G solvation = -3754.490132 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -47.67952 -40.45376 -38.13392 -37.32635 -34.17940 -33.63081 -32.31253 -30.63366 -29.27327 -28.55475 -27.12845 -27.11542 -25.52409 -23.34988 -22.65954 -21.04277 -20.49376 -20.12340 -17.71314 -17.20015 -16.55831 -15.86288 -15.48783 -15.19100 -15.05447 -14.66590 -14.56445 -14.35131 -14.17640 -13.89074 -13.61342 -13.21117 -12.64846 -12.54560 -12.34241 -12.22443 -12.12249 -12.03347 -11.77587 -11.71810 -11.68677 -11.39480 -11.24743 -10.98657 -10.73699 -10.60517 -10.43771 -10.37006 -10.19260 -9.66832 -9.29679 -9.25010 -8.98513 -8.03490 -7.58718 -7.21905 -6.97151 -4.55025 1.49733 1.69538 2.56120 2.88813 2.98309 3.02757 3.05454 3.46510 3.79036 4.15293 4.40034 4.58932 5.08276 5.08688 5.21939 5.24453 5.36842 5.48919 5.52712 5.54021 5.67500 5.69995 5.75770 5.94594 5.95951 6.05180 6.12629 6.13905 6.19033 6.28322 6.39991 6.54272 6.58753 6.60405 6.79573 6.82329 6.86608 6.97836 7.05942 7.49111 7.54850 7.82210 7.88057 7.89809 8.07122 8.25001 8.44289 8.66932 8.75455 9.95821 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017301 B = 0.004080 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.982040 B = 6860.453976 C = 7503.623872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.118 3.882 3 C -0.140 4.140 4 C -0.180 4.180 5 O -0.278 6.278 6 C 0.329 3.671 7 N -0.535 5.535 8 C 0.107 3.893 9 C -0.213 4.213 10 C -0.049 4.049 11 C -0.059 4.059 12 C -0.224 4.224 13 C -0.055 4.055 14 C -0.177 4.177 15 C 0.137 3.863 16 C -0.447 4.447 17 H 0.084 0.916 18 C 0.076 3.924 19 N -0.777 5.777 20 Si 0.912 3.088 21 H -0.258 1.258 22 H -0.269 1.269 23 H -0.272 1.272 24 C -0.268 4.268 25 C 0.154 3.846 26 F -0.163 7.163 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.149 0.851 37 H 0.128 0.872 38 H 0.136 0.864 39 H 0.095 0.905 40 H 0.123 0.877 41 H 0.285 0.715 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.102 -3.427 -7.927 11.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.080 3.920 3 C -0.197 4.197 4 C -0.237 4.237 5 O -0.184 6.184 6 C 0.150 3.850 7 N -0.259 5.259 8 C -0.048 4.048 9 C -0.234 4.234 10 C -0.074 4.074 11 C -0.062 4.062 12 C -0.227 4.227 13 C -0.074 4.074 14 C -0.196 4.196 15 C 0.134 3.866 16 C -0.475 4.475 17 H 0.102 0.898 18 C -0.145 4.145 19 N -0.400 5.400 20 Si 0.736 3.264 21 H -0.181 1.181 22 H -0.194 1.194 23 H -0.198 1.198 24 C -0.288 4.288 25 C 0.135 3.865 26 F -0.142 7.142 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.167 0.833 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.113 0.887 40 H 0.140 0.860 41 H 0.096 0.904 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.009 -2.733 -8.613 11.436 hybrid contribution 0.522 -0.195 0.992 1.138 sum -6.486 -2.928 -7.621 10.427 Atomic orbital electron populations 1.22539 0.94845 1.04766 1.01526 1.21622 0.94144 0.92066 0.84210 1.21812 1.02271 0.93210 1.02449 1.22549 1.01170 1.03527 0.96483 1.86447 1.69167 1.19492 1.43331 1.20089 0.90274 0.84992 0.89601 1.67378 1.15890 1.13030 1.29603 1.22285 0.97158 0.88654 0.96720 1.21779 1.03289 1.01342 0.96961 1.21613 0.94233 0.93554 0.97986 1.18800 1.00168 0.93225 0.94015 1.17615 0.95884 1.04291 1.04870 1.20245 0.91667 0.98193 0.97257 1.20994 1.00406 0.98222 0.99977 1.17432 0.89895 0.89132 0.90154 1.19669 0.90617 1.29544 1.07673 0.89816 1.26016 0.99095 0.92579 0.96772 1.69838 1.13347 1.32948 1.23906 0.86193 0.79635 0.78920 0.81701 1.18131 1.19435 1.19751 1.20587 0.97406 1.05752 1.05093 1.17157 0.78228 0.94159 0.96932 1.91340 1.39020 1.89164 1.94648 0.92679 0.92216 0.89137 0.91594 0.90975 0.91619 0.89107 0.92172 0.92722 0.83349 0.85409 0.84645 0.88663 0.85959 0.90429 0.87754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 8.35 37.16 0.31 -2.30 16 2 C 0.12 1.87 1.11 -90.62 -0.10 1.77 16 3 C -0.14 -1.99 8.84 37.16 0.33 -1.66 16 4 C -0.18 -2.58 8.35 37.15 0.31 -2.27 16 5 O -0.28 -5.59 8.93 -18.35 -0.16 -5.75 16 6 C 0.33 6.38 6.58 -16.64 -0.11 6.27 16 7 N -0.54 -8.84 4.58 -12.96 -0.06 -8.90 16 8 C 0.11 1.48 11.17 -17.47 -0.20 1.28 16 9 C -0.21 -2.91 10.09 -39.49 -0.40 -3.31 16 10 C -0.05 -0.81 9.89 -38.90 -0.38 -1.19 16 11 C -0.06 -1.19 5.02 -104.58 -0.52 -1.71 16 12 C -0.22 -5.10 5.01 -104.57 -0.52 -5.63 16 13 C -0.05 -1.26 9.67 -39.65 -0.38 -1.64 16 14 C -0.18 -4.40 8.63 -39.27 -0.34 -4.73 16 15 C 0.14 3.54 5.57 -106.81 -0.60 2.94 16 16 C -0.45 -11.30 9.03 -37.89 -0.34 -11.64 16 17 H 0.08 2.03 7.91 -52.49 -0.42 1.62 16 18 C 0.08 1.79 5.13 -17.33 -0.09 1.70 16 19 N -0.78 -19.00 10.96 55.55 0.61 -18.39 16 20 Si 0.91 17.56 29.60 -169.99 -5.03 12.53 16 21 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 22 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 23 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 24 C -0.27 -6.69 9.70 -39.23 -0.38 -7.07 16 25 C 0.15 3.73 6.90 -39.49 -0.27 3.45 16 26 F -0.16 -3.84 16.60 2.25 0.04 -3.81 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.39 5.58 -51.93 -0.29 1.10 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 1.37 5.58 -51.93 -0.29 1.08 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.14 2.04 8.06 -52.48 -0.42 1.62 16 39 H 0.10 1.97 8.06 -52.48 -0.42 1.55 16 40 H 0.12 3.09 6.16 -52.49 -0.32 2.76 16 41 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 42 H 0.10 2.49 8.06 -52.48 -0.42 2.07 16 LS Contribution 351.82 15.07 5.30 5.30 Total: -1.00 -27.66 351.82 -8.52 -36.18 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.53 Total: 8.58 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -3.69 Total: -25.74 kcal Atomic # 7 Polarization: -27.84 SS G_CDS: 0.55 Total: -27.29 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.16 Total: -5.75 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.04 Total: -3.81 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.66 -8.52 -36.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241143669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.395 kcal (2) G-P(sol) polarization free energy of solvation -27.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds