Wall clock time and date at job start Tue Mar 31 2020 11:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46779 * 2 1 4 4 C 1.52994 * 109.47171 * 239.99727 * 2 1 3 5 5 O 1.42901 * 109.47114 * 119.99431 * 2 1 3 6 6 C 1.35553 * 116.99627 * 60.00296 * 5 2 1 7 7 N 1.32144 * 119.79755 * 359.97438 * 6 5 2 8 8 C 1.31959 * 121.79966 * 179.97438 * 7 6 5 9 9 C 1.38313 * 121.17341 * 0.02562 * 8 7 6 10 10 C 1.38419 * 119.44246 * 359.97438 * 9 8 7 11 11 C 1.39880 * 118.35480 * 359.97438 * 10 9 8 12 12 C 1.47820 * 120.59106 * 179.97438 * 11 10 9 13 13 C 1.40007 * 119.90292 * 65.00164 * 12 11 10 14 14 C 1.36197 * 120.13706 * 179.97438 * 13 12 11 15 15 C 1.40988 * 119.93211 * 359.97438 * 14 13 12 16 16 C 1.40997 * 120.09576 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99435 * 204.72579 * 16 15 14 18 18 C 1.39968 * 119.99995 * 24.73117 * 16 15 14 19 19 N 1.30824 * 120.00085 * 17.99487 * 18 16 15 20 20 Si 1.86802 * 120.00075 * 197.99139 * 18 16 15 21 21 H 1.48504 * 109.46948 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47269 * 119.99868 * 20 18 16 23 23 H 1.48497 * 109.47104 * 240.00214 * 20 18 16 24 24 C 1.40886 * 119.80355 * 359.97438 * 15 14 13 25 25 C 1.36435 * 119.86316 * 359.74151 * 24 15 14 26 26 F 1.35103 * 119.96881 * 180.27127 * 25 24 15 27 27 H 1.08997 * 109.47001 * 300.00311 * 1 2 3 28 28 H 1.08999 * 109.46841 * 60.00244 * 1 2 3 29 29 H 1.08995 * 109.46614 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46792 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46736 * 299.99487 * 3 2 1 32 32 H 1.08991 * 109.47279 * 59.99778 * 3 2 1 33 33 H 1.09003 * 109.47540 * 299.99834 * 4 2 1 34 34 H 1.09003 * 109.47486 * 59.99814 * 4 2 1 35 35 H 1.09002 * 109.47265 * 179.97438 * 4 2 1 36 36 H 1.08002 * 119.41284 * 180.28144 * 8 7 6 37 37 H 1.07989 * 120.27809 * 180.02562 * 9 8 7 38 38 H 1.08003 * 120.81848 * 180.02562 * 10 9 8 39 39 H 1.08007 * 119.93030 * 359.97438 * 13 12 11 40 40 H 1.07998 * 120.03057 * 180.02562 * 14 13 12 41 41 H 0.97003 * 119.99908 * 180.02562 * 19 18 16 42 42 H 1.08009 * 120.06832 * 179.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0064 -0.6735 1.1668 6 6 1.6422 -1.9701 1.3207 7 7 0.8794 -2.5503 0.4109 8 6 0.5019 -3.8100 0.5207 9 6 0.8905 -4.5823 1.6003 10 6 1.6901 -4.0247 2.5831 11 6 2.0784 -2.6881 2.4445 12 6 2.9314 -2.0429 3.4649 13 6 4.2419 -2.4932 3.6653 14 6 5.0321 -1.9018 4.6038 15 6 4.5297 -0.8336 5.3747 16 6 5.3446 -0.2193 6.3476 17 1 4.8934 0.2913 7.1855 18 6 6.7381 -0.2711 6.2273 19 7 7.2848 -0.5627 5.0751 20 14 7.8173 0.0764 7.7119 21 1 6.9606 0.3792 8.8866 22 1 8.6557 -1.1140 8.0039 23 1 8.6933 1.2407 7.4255 24 6 3.2110 -0.3819 5.1700 25 6 2.4284 -0.9765 4.2236 26 9 1.1654 -0.5414 4.0218 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6768 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7209 -1.2494 36 1 -0.1182 -4.2468 -0.2481 37 1 0.5735 -5.6119 1.6755 38 1 2.0069 -4.6076 3.4353 39 1 4.6269 -3.3112 3.0744 40 1 6.0428 -2.2503 4.7567 41 1 8.2506 -0.5990 4.9919 42 1 2.8215 0.4358 5.7585 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241143669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:38 Heat of formation + Delta-G solvation = -45.184105 kcal Electronic energy + Delta-G solvation = -26523.026510 eV Core-core repulsion = 22767.998633 eV Total energy + Delta-G solvation = -3755.027876 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.57692 -41.74462 -39.53993 -39.01994 -35.86244 -34.96680 -33.77564 -32.08053 -31.06630 -30.23342 -28.28264 -28.24688 -27.22087 -24.66328 -24.13560 -22.91559 -22.17489 -21.36810 -19.59232 -18.47693 -17.91658 -17.44764 -17.07720 -16.90131 -16.60569 -16.26390 -16.23481 -15.80360 -15.49613 -15.12410 -15.03285 -14.73857 -14.33819 -14.12079 -13.84261 -13.63567 -13.34082 -13.31996 -13.24383 -12.91210 -12.86038 -12.83647 -12.78778 -12.60086 -12.41077 -12.25819 -11.94238 -11.69195 -11.56720 -11.43750 -11.07929 -10.59273 -10.27079 -9.60294 -9.34550 -8.96401 -8.75385 -6.45879 0.17818 0.44566 0.82240 0.94759 1.39198 1.47767 1.55238 2.17750 2.22421 2.57270 2.91352 3.40079 3.53439 3.78867 3.91435 3.91603 4.06830 4.08983 4.15347 4.23550 4.30960 4.45600 4.62404 4.67135 4.74787 4.81033 4.82797 4.88864 4.92530 4.96725 4.97078 5.05592 5.12329 5.18408 5.20507 5.39377 5.39882 5.44421 5.61380 5.64453 5.75183 5.97269 5.97847 6.19692 6.54031 6.58108 6.78239 6.84990 7.00081 8.20480 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017301 B = 0.004080 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.982040 B = 6860.453976 C = 7503.623872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 C -0.139 4.139 4 C -0.171 4.171 5 O -0.314 6.314 6 C 0.313 3.687 7 N -0.535 5.535 8 C 0.115 3.885 9 C -0.199 4.199 10 C -0.048 4.048 11 C -0.109 4.109 12 C -0.207 4.207 13 C -0.057 4.057 14 C -0.191 4.191 15 C 0.111 3.889 16 C -0.482 4.482 17 H 0.082 0.918 18 C 0.039 3.961 19 N -0.808 5.808 20 Si 0.988 3.012 21 H -0.257 1.257 22 H -0.259 1.259 23 H -0.264 1.264 24 C -0.287 4.287 25 C 0.139 3.861 26 F -0.163 7.163 27 H 0.037 0.963 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.195 0.805 37 H 0.172 0.828 38 H 0.145 0.855 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.295 0.705 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.024 -5.021 -9.569 13.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.066 3.934 3 C -0.196 4.196 4 C -0.229 4.229 5 O -0.222 6.222 6 C 0.136 3.864 7 N -0.258 5.258 8 C -0.040 4.040 9 C -0.219 4.219 10 C -0.074 4.074 11 C -0.112 4.112 12 C -0.210 4.210 13 C -0.075 4.075 14 C -0.210 4.210 15 C 0.108 3.892 16 C -0.510 4.510 17 H 0.100 0.900 18 C -0.178 4.178 19 N -0.433 5.433 20 Si 0.807 3.193 21 H -0.181 1.181 22 H -0.183 1.183 23 H -0.189 1.189 24 C -0.308 4.308 25 C 0.120 3.880 26 F -0.142 7.142 27 H 0.056 0.944 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.125 0.875 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.060 0.940 36 H 0.212 0.788 37 H 0.189 0.811 38 H 0.163 0.837 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.106 0.894 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.945 -4.324 -10.270 13.685 hybrid contribution 0.637 0.189 1.317 1.475 sum -7.308 -4.135 -8.953 12.275 Atomic orbital electron populations 1.22463 0.93795 1.04486 1.02085 1.21991 0.95102 0.92478 0.83795 1.21860 1.01473 0.92795 1.03439 1.22469 1.00258 1.03353 0.96772 1.86394 1.70097 1.20380 1.45340 1.20120 0.91163 0.84935 0.90189 1.67493 1.15399 1.14311 1.28642 1.23182 0.95807 0.87604 0.97440 1.22213 1.01218 1.03138 0.95340 1.21848 0.94244 0.92133 0.99142 1.18858 1.02640 0.95107 0.94561 1.17894 0.95980 1.02927 1.04176 1.20485 0.91691 0.98522 0.96822 1.21000 1.00380 0.98598 1.01009 1.17718 0.90416 0.89965 0.91105 1.19895 0.91968 1.31058 1.08048 0.90024 1.26857 0.99657 0.91750 0.99579 1.69866 1.14315 1.33348 1.25726 0.85073 0.77496 0.79149 0.77541 1.18070 1.18320 1.18911 1.20689 0.97809 1.06331 1.05934 1.17348 0.78317 0.95072 0.97286 1.91320 1.38939 1.89261 1.94668 0.94382 0.89290 0.89752 0.92866 0.87475 0.93078 0.89665 0.89323 0.94045 0.78803 0.81067 0.83683 0.86516 0.86770 0.89423 0.87998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.75 8.35 71.98 0.60 -4.15 16 2 C 0.10 3.24 1.11 -10.79 -0.01 3.23 16 3 C -0.14 -3.91 8.84 71.98 0.64 -3.27 16 4 C -0.17 -4.64 8.35 71.98 0.60 -4.04 16 5 O -0.31 -12.90 8.93 -88.59 -0.79 -13.70 16 6 C 0.31 12.02 6.58 85.15 0.56 12.58 16 7 N -0.53 -16.48 4.58 -307.90 -1.41 -17.89 16 8 C 0.12 2.71 11.17 84.69 0.95 3.65 16 9 C -0.20 -4.61 10.09 22.33 0.23 -4.39 16 10 C -0.05 -1.51 9.89 22.71 0.22 -1.29 16 11 C -0.11 -4.34 5.02 -19.84 -0.10 -4.44 16 12 C -0.21 -9.71 5.01 -19.83 -0.10 -9.81 16 13 C -0.06 -2.67 9.67 22.22 0.21 -2.46 16 14 C -0.19 -9.91 8.63 22.47 0.19 -9.71 16 15 C 0.11 6.04 5.57 -21.28 -0.12 5.92 16 16 C -0.48 -25.51 9.03 23.37 0.21 -25.30 16 17 H 0.08 4.18 7.91 -2.91 -0.02 4.15 16 18 C 0.04 1.90 5.13 85.26 0.44 2.33 16 19 N -0.81 -40.61 10.96 21.83 0.24 -40.37 16 20 Si 0.99 36.35 29.60 68.60 2.03 38.38 16 21 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 22 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 23 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 24 C -0.29 -15.23 9.70 22.50 0.22 -15.01 16 25 C 0.14 7.02 6.90 22.33 0.15 7.17 16 26 F -0.16 -8.02 16.60 44.97 0.75 -7.28 16 27 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.08 2.44 5.58 -2.39 -0.01 2.43 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 2.40 5.58 -2.39 -0.01 2.39 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.20 2.77 8.06 -2.91 -0.02 2.75 16 37 H 0.17 2.50 8.06 -2.92 -0.02 2.48 16 38 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 39 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 40 H 0.11 6.03 6.16 -2.91 -0.02 6.01 16 41 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 42 H 0.10 5.23 8.06 -2.91 -0.02 5.21 16 Total: -1.00 -64.12 351.82 6.74 -57.39 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: 1.03 Total: 32.44 kcal Atomic # 6 Polarization: -53.87 SS G_CDS: 4.89 Total: -48.97 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -1.17 Total: -58.26 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.79 Total: -13.70 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 0.75 Total: -7.28 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 2.03 Total: 38.38 kcal Total: -64.12 6.74 -57.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241143669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.201 kcal (2) G-P(sol) polarization free energy of solvation -64.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds