Wall clock time and date at job start Tue Mar 31 2020 11:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46884 * 2 1 4 4 C 1.53002 * 109.47037 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.47016 * 179.97438 * 4 3 2 6 6 C 1.35902 * 116.99771 * 180.02562 * 5 4 3 7 7 C 1.38836 * 119.99678 * 359.97438 * 6 5 4 8 8 C 1.38213 * 120.18693 * 179.97438 * 7 6 5 9 9 C 1.38064 * 120.18130 * 0.02562 * 8 7 6 10 10 C 1.39344 * 119.99022 * 0.02562 * 9 8 7 11 11 C 1.48385 * 120.09404 * 180.02562 * 10 9 8 12 12 C 1.39012 * 120.41405 * 309.99520 * 11 10 9 13 13 C 1.40960 * 118.12339 * 179.97438 * 12 11 10 14 14 C 1.41376 * 120.57060 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00218 * 155.72094 * 14 13 12 16 16 C 1.39901 * 120.00101 * 335.72372 * 14 13 12 17 17 N 1.30862 * 119.99884 * 343.51592 * 16 14 13 18 18 Si 1.86802 * 120.00000 * 163.52148 * 16 14 13 19 19 H 1.48495 * 109.47253 * 89.99873 * 18 16 14 20 20 H 1.48504 * 109.46995 * 209.99874 * 18 16 14 21 21 H 1.48500 * 109.47379 * 329.99543 * 18 16 14 22 22 C 1.40794 * 118.85708 * 359.97438 * 13 12 11 23 23 N 1.31507 * 120.69615 * 0.02562 * 22 13 12 24 24 C 1.32165 * 122.07332 * 359.71607 * 23 22 13 25 25 F 1.35101 * 119.45526 * 180.29350 * 24 23 22 26 26 C 1.38498 * 119.99637 * 179.73097 * 6 5 4 27 27 H 1.08996 * 109.46987 * 60.00466 * 1 2 3 28 28 H 1.08997 * 109.46806 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47053 * 300.00256 * 1 2 3 30 30 H 1.08996 * 109.47521 * 239.99964 * 2 1 3 31 31 H 1.08996 * 109.46987 * 119.99534 * 2 1 3 32 32 H 1.09003 * 109.47513 * 60.00177 * 3 2 1 33 33 H 1.09004 * 109.47508 * 299.99386 * 3 2 1 34 34 H 1.08996 * 109.47149 * 60.00098 * 4 3 2 35 35 H 1.08996 * 109.47206 * 299.99762 * 4 3 2 36 36 H 1.07995 * 119.90501 * 0.02562 * 7 6 5 37 37 H 1.08003 * 119.90745 * 180.02562 * 8 7 6 38 38 H 1.08008 * 120.00191 * 180.02562 * 9 8 7 39 39 H 1.07998 * 120.94315 * 359.95980 * 12 11 10 40 40 H 0.97001 * 119.99719 * 179.97438 * 17 16 14 41 41 H 1.08001 * 119.65587 * 180.02562 * 22 13 12 42 42 H 1.08002 * 120.08582 * 359.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0463 2.7899 0.0000 6 6 5.3936 2.9680 0.0000 7 6 6.2392 1.8669 0.0010 8 6 7.6101 2.0434 0.0004 9 6 8.1460 3.3158 -0.0007 10 6 7.3042 4.4262 -0.0007 11 6 7.8777 5.7947 -0.0024 12 6 8.8614 6.1467 0.9146 13 6 9.3728 7.4595 0.8694 14 6 10.3739 7.8729 1.7781 15 1 11.0304 8.6915 1.5226 16 6 10.5141 7.2215 3.0082 17 7 9.5475 6.4652 3.4621 18 14 12.0812 7.4317 4.0030 19 1 11.9358 8.5935 4.9162 20 1 12.3299 6.2036 4.8001 21 1 13.2238 7.6647 3.0835 22 6 8.8694 8.3520 -0.0962 23 7 7.9378 7.9702 -0.9422 24 6 7.4393 6.7462 -0.9319 25 9 6.4876 6.4089 -1.8295 26 6 5.9229 4.2478 -0.0062 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9564 -0.8901 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9289 0.8908 36 1 5.8248 0.8696 0.0014 37 1 8.2637 1.1837 0.0008 38 1 9.2177 3.4504 -0.0016 39 1 9.2235 5.4346 1.6413 40 1 9.6449 6.0133 4.3148 41 1 9.2523 9.3608 -0.1426 42 1 5.2662 5.1052 -0.0114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241295021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:53 Heat of formation + Delta-G solvation = -54.748990 kcal Electronic energy + Delta-G solvation = -24872.868179 eV Core-core repulsion = 21117.425538 eV Total energy + Delta-G solvation = -3755.442641 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -47.55571 -39.90013 -38.46580 -37.21023 -35.27271 -34.20314 -32.29419 -30.66268 -30.31346 -28.90699 -28.29918 -25.55068 -24.34302 -22.76223 -22.51076 -21.48631 -21.24256 -20.36695 -18.01636 -17.07163 -16.59086 -16.44420 -16.07665 -15.78368 -15.44305 -15.11667 -14.87143 -14.65360 -14.27961 -13.77789 -13.57022 -13.31351 -13.08346 -12.95721 -12.54398 -12.31883 -12.28647 -12.03859 -11.87557 -11.78108 -11.49724 -11.46385 -11.33000 -11.26825 -11.15105 -11.07207 -10.72635 -10.64851 -10.59811 -10.13729 -9.51007 -9.00296 -8.44202 -8.11118 -7.90396 -7.49827 -7.02888 -4.64366 1.48063 1.81653 2.40635 2.68135 2.94416 2.96101 3.02830 3.26003 3.73219 4.13244 4.37156 4.60744 4.64873 4.77234 4.98885 5.02545 5.07027 5.12982 5.22370 5.29185 5.33210 5.45964 5.48519 5.50333 5.57447 5.71110 5.76194 5.85144 5.92459 5.93246 6.01878 6.12644 6.32418 6.49045 6.58642 6.67995 6.72861 6.87196 6.91220 7.04749 7.13961 7.43868 7.60478 7.67876 7.74624 8.19198 8.45426 8.46665 9.20327 9.88536 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017130 B = 0.002944 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.184964 B = 9507.008724 C =10366.389438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.121 4.121 4 C 0.060 3.940 5 O -0.317 6.317 6 C 0.126 3.874 7 C -0.219 4.219 8 C -0.084 4.084 9 C -0.142 4.142 10 C 0.027 3.973 11 C -0.105 4.105 12 C -0.093 4.093 13 C 0.053 3.947 14 C -0.439 4.439 15 H 0.088 0.912 16 C 0.072 3.928 17 N -0.783 5.783 18 Si 0.915 3.085 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.258 1.258 22 C 0.012 3.988 23 N -0.489 5.489 24 C 0.166 3.834 25 F -0.144 7.144 26 C -0.133 4.133 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.141 0.859 40 H 0.287 0.713 41 H 0.139 0.861 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.621 -12.768 -1.377 14.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.158 4.158 4 C -0.015 4.015 5 O -0.231 6.231 6 C 0.081 3.919 7 C -0.238 4.238 8 C -0.102 4.102 9 C -0.160 4.160 10 C 0.026 3.974 11 C -0.109 4.109 12 C -0.119 4.119 13 C 0.049 3.951 14 C -0.468 4.468 15 H 0.106 0.894 16 C -0.148 4.148 17 N -0.407 5.407 18 Si 0.739 3.261 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.182 1.182 22 C -0.150 4.150 23 N -0.201 5.201 24 C 0.012 3.988 25 F -0.124 7.124 26 C -0.152 4.152 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.158 0.842 40 H 0.098 0.902 41 H 0.156 0.844 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.218 -12.215 -1.811 14.833 hybrid contribution 0.828 -0.785 1.048 1.549 sum -7.390 -13.001 -0.764 14.974 Atomic orbital electron populations 1.21750 0.95276 1.01730 1.02153 1.21430 0.96346 0.95778 1.02328 1.21584 0.92838 0.97546 1.03839 1.22766 0.95104 0.82491 1.01173 1.86048 1.19436 1.28562 1.89061 1.18789 0.81812 0.93932 0.97351 1.21100 0.94420 0.97382 1.10912 1.20766 0.94100 0.96929 0.98432 1.21149 0.99889 0.91492 1.03480 1.18524 0.91603 0.92592 0.94694 1.19126 1.00935 0.91917 0.98878 1.21744 0.95872 0.96762 0.97486 1.18493 0.92531 0.91283 0.92806 1.19553 1.13297 1.15040 0.98951 0.89363 1.26030 0.97479 0.93205 0.98064 1.69777 1.30293 1.22054 1.18622 0.86175 0.81471 0.78923 0.79534 1.19170 1.19861 1.18153 1.22316 0.96895 0.98937 0.96813 1.66293 1.11781 1.16299 1.25738 1.17518 0.96083 0.91090 0.94069 1.91413 1.62176 1.91832 1.66932 1.20462 0.94532 0.94730 1.05452 0.92526 0.92582 0.92528 0.91731 0.91724 0.90790 0.90783 0.92289 0.92266 0.86140 0.86083 0.85749 0.84162 0.90161 0.84355 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.87 5.93 -26.73 -0.16 -1.03 16 3 C -0.12 -1.12 5.58 -26.73 -0.15 -1.27 16 4 C 0.06 0.67 4.74 37.16 0.18 0.85 16 5 O -0.32 -4.99 10.13 -19.43 -0.20 -5.18 16 6 C 0.13 2.17 6.68 -39.26 -0.26 1.91 16 7 C -0.22 -3.30 9.03 -39.37 -0.36 -3.66 16 8 C -0.08 -1.29 10.03 -39.65 -0.40 -1.69 16 9 C -0.14 -2.58 9.53 -39.23 -0.37 -2.95 16 10 C 0.03 0.56 5.33 -104.92 -0.56 0.00 16 11 C -0.10 -2.48 5.48 -104.75 -0.57 -3.05 16 12 C -0.09 -2.29 8.28 -38.26 -0.32 -2.60 16 13 C 0.05 1.33 5.59 -106.71 -0.60 0.74 16 14 C -0.44 -10.52 9.08 -37.77 -0.34 -10.86 16 15 H 0.09 1.98 7.90 -52.48 -0.41 1.56 16 16 C 0.07 1.64 5.19 -17.34 -0.09 1.55 16 17 N -0.78 -18.60 10.90 55.55 0.61 -18.00 16 18 Si 0.92 16.97 29.59 -169.99 -5.03 11.94 16 19 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 20 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 21 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 22 C 0.01 0.28 10.96 -16.73 -0.18 0.10 16 23 N -0.49 -12.35 10.34 -12.59 -0.13 -12.48 16 24 C 0.17 4.12 8.30 -16.73 -0.14 3.99 16 25 F -0.14 -3.44 15.90 2.25 0.04 -3.41 16 26 C -0.13 -2.65 8.81 -39.10 -0.34 -2.99 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.60 7.66 -51.93 -0.40 0.21 16 35 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 36 H 0.12 1.45 6.28 -52.49 -0.33 1.12 16 37 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 38 H 0.12 2.16 8.04 -52.48 -0.42 1.74 16 39 H 0.14 3.46 6.20 -52.49 -0.33 3.13 16 40 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 41 H 0.14 3.00 8.06 -52.49 -0.42 2.58 16 42 H 0.13 2.65 7.79 -52.49 -0.41 2.24 16 LS Contribution 359.56 15.07 5.42 5.42 Total: -1.00 -27.46 359.56 -9.23 -36.69 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.64 Total: 6.60 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -4.30 Total: -21.58 kcal Atomic # 7 Polarization: -30.95 SS G_CDS: 0.48 Total: -30.48 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.20 Total: -5.18 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.04 Total: -3.41 kcal Atomic # 14 Polarization: 16.97 SS G_CDS: -5.03 Total: 11.94 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.46 -9.23 -36.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241295021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.062 kcal (2) G-P(sol) polarization free energy of solvation -27.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds