Wall clock time and date at job start Tue Mar 31 2020 11:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46884 * 2 1 4 4 C 1.53002 * 109.47037 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.47016 * 179.97438 * 4 3 2 6 6 C 1.35902 * 116.99771 * 180.02562 * 5 4 3 7 7 C 1.38836 * 119.99678 * 359.97438 * 6 5 4 8 8 C 1.38213 * 120.18693 * 179.97438 * 7 6 5 9 9 C 1.38064 * 120.18130 * 0.02562 * 8 7 6 10 10 C 1.39344 * 119.99022 * 0.02562 * 9 8 7 11 11 C 1.48385 * 120.09404 * 180.02562 * 10 9 8 12 12 C 1.39012 * 120.41405 * 309.99520 * 11 10 9 13 13 C 1.40960 * 118.12339 * 179.97438 * 12 11 10 14 14 C 1.41376 * 120.57060 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00218 * 155.72094 * 14 13 12 16 16 C 1.39901 * 120.00101 * 335.72372 * 14 13 12 17 17 N 1.30862 * 119.99884 * 343.51592 * 16 14 13 18 18 Si 1.86802 * 120.00000 * 163.52148 * 16 14 13 19 19 H 1.48495 * 109.47253 * 89.99873 * 18 16 14 20 20 H 1.48504 * 109.46995 * 209.99874 * 18 16 14 21 21 H 1.48500 * 109.47379 * 329.99543 * 18 16 14 22 22 C 1.40794 * 118.85708 * 359.97438 * 13 12 11 23 23 N 1.31507 * 120.69615 * 0.02562 * 22 13 12 24 24 C 1.32165 * 122.07332 * 359.71607 * 23 22 13 25 25 F 1.35101 * 119.45526 * 180.29350 * 24 23 22 26 26 C 1.38498 * 119.99637 * 179.73097 * 6 5 4 27 27 H 1.08996 * 109.46987 * 60.00466 * 1 2 3 28 28 H 1.08997 * 109.46806 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47053 * 300.00256 * 1 2 3 30 30 H 1.08996 * 109.47521 * 239.99964 * 2 1 3 31 31 H 1.08996 * 109.46987 * 119.99534 * 2 1 3 32 32 H 1.09003 * 109.47513 * 60.00177 * 3 2 1 33 33 H 1.09004 * 109.47508 * 299.99386 * 3 2 1 34 34 H 1.08996 * 109.47149 * 60.00098 * 4 3 2 35 35 H 1.08996 * 109.47206 * 299.99762 * 4 3 2 36 36 H 1.07995 * 119.90501 * 0.02562 * 7 6 5 37 37 H 1.08003 * 119.90745 * 180.02562 * 8 7 6 38 38 H 1.08008 * 120.00191 * 180.02562 * 9 8 7 39 39 H 1.07998 * 120.94315 * 359.95980 * 12 11 10 40 40 H 0.97001 * 119.99719 * 179.97438 * 17 16 14 41 41 H 1.08001 * 119.65587 * 180.02562 * 22 13 12 42 42 H 1.08002 * 120.08582 * 359.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0463 2.7899 0.0000 6 6 5.3936 2.9680 0.0000 7 6 6.2392 1.8669 0.0010 8 6 7.6101 2.0434 0.0004 9 6 8.1460 3.3158 -0.0007 10 6 7.3042 4.4262 -0.0007 11 6 7.8777 5.7947 -0.0024 12 6 8.8614 6.1467 0.9146 13 6 9.3728 7.4595 0.8694 14 6 10.3739 7.8729 1.7781 15 1 11.0304 8.6915 1.5226 16 6 10.5141 7.2215 3.0082 17 7 9.5475 6.4652 3.4621 18 14 12.0812 7.4317 4.0030 19 1 11.9358 8.5935 4.9162 20 1 12.3299 6.2036 4.8001 21 1 13.2238 7.6647 3.0835 22 6 8.8694 8.3520 -0.0962 23 7 7.9378 7.9702 -0.9422 24 6 7.4393 6.7462 -0.9319 25 9 6.4876 6.4089 -1.8295 26 6 5.9229 4.2478 -0.0062 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9564 -0.8901 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9289 0.8908 36 1 5.8248 0.8696 0.0014 37 1 8.2637 1.1837 0.0008 38 1 9.2177 3.4504 -0.0016 39 1 9.2235 5.4346 1.6413 40 1 9.6449 6.0133 4.3148 41 1 9.2523 9.3608 -0.1426 42 1 5.2662 5.1052 -0.0114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241295021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:52 Heat of formation + Delta-G solvation = -66.993575 kcal Electronic energy + Delta-G solvation = -24873.399144 eV Core-core repulsion = 21117.425538 eV Total energy + Delta-G solvation = -3755.973606 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.44999 -41.18684 -40.19577 -38.52992 -36.03699 -35.99875 -33.88531 -32.28012 -31.67185 -30.02212 -29.70170 -27.40347 -25.40934 -24.20431 -23.98349 -23.08191 -22.07030 -21.75834 -19.55659 -18.68402 -18.41567 -17.80942 -17.32549 -17.12826 -16.82633 -16.79179 -16.44436 -15.68429 -15.64815 -15.11589 -14.77359 -14.55021 -14.35509 -14.20807 -14.11176 -13.84591 -13.79099 -13.66016 -13.28764 -13.06147 -12.94071 -12.81520 -12.62625 -12.34748 -12.22791 -12.00407 -11.90992 -11.82233 -11.70511 -11.45451 -11.23938 -10.62632 -10.33026 -9.83672 -9.41016 -9.09378 -8.79112 -6.51783 -0.04163 0.45947 0.66518 0.87933 1.42350 1.49236 1.58520 2.16587 2.17671 2.54249 2.78998 3.24485 3.45879 3.68532 3.84155 3.91423 3.95246 4.11589 4.14707 4.21119 4.30879 4.34950 4.35073 4.49209 4.58422 4.61957 4.65241 4.84777 4.85168 4.90502 4.96637 5.04116 5.07281 5.12853 5.20551 5.28761 5.31387 5.41867 5.43114 5.50893 5.67023 5.70387 5.78232 5.90446 6.34184 6.46647 6.59083 6.62961 7.29811 8.15123 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017130 B = 0.002944 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.184964 B = 9507.008724 C =10366.389438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.118 4.118 4 C 0.050 3.950 5 O -0.336 6.336 6 C 0.126 3.874 7 C -0.205 4.205 8 C -0.070 4.070 9 C -0.154 4.154 10 C -0.004 4.004 11 C -0.096 4.096 12 C -0.112 4.112 13 C 0.034 3.966 14 C -0.456 4.456 15 H 0.100 0.900 16 C 0.035 3.965 17 N -0.809 5.809 18 Si 0.992 3.008 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.253 1.253 22 C -0.003 4.003 23 N -0.503 5.503 24 C 0.133 3.867 25 F -0.146 7.146 26 C -0.159 4.159 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.126 0.874 39 H 0.136 0.864 40 H 0.297 0.703 41 H 0.158 0.842 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.788 -15.494 -0.321 16.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.156 4.156 4 C -0.024 4.024 5 O -0.250 6.250 6 C 0.081 3.919 7 C -0.223 4.223 8 C -0.088 4.088 9 C -0.172 4.172 10 C -0.005 4.005 11 C -0.100 4.100 12 C -0.137 4.137 13 C 0.029 3.971 14 C -0.484 4.484 15 H 0.118 0.882 16 C -0.183 4.183 17 N -0.433 5.433 18 Si 0.812 3.188 19 H -0.186 1.186 20 H -0.190 1.190 21 H -0.176 1.176 22 C -0.165 4.165 23 N -0.215 5.215 24 C -0.020 4.020 25 F -0.126 7.126 26 C -0.178 4.178 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.179 0.821 37 H 0.182 0.818 38 H 0.144 0.856 39 H 0.153 0.847 40 H 0.108 0.892 41 H 0.176 0.824 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.419 -14.953 -0.774 16.710 hybrid contribution 0.474 -0.017 0.768 0.903 sum -6.945 -14.970 -0.006 16.503 Atomic orbital electron populations 1.21765 0.94909 1.02417 1.01964 1.21415 0.96624 0.94127 1.03184 1.21608 0.91711 0.99081 1.03179 1.23147 0.96106 0.80552 1.02608 1.86045 1.18607 1.31640 1.88754 1.18818 0.82963 0.93506 0.96663 1.21541 0.94060 0.98382 1.08304 1.21215 0.94862 0.96828 0.95851 1.21283 0.99766 0.92096 1.04039 1.18525 0.92404 0.91996 0.97599 1.19355 0.99841 0.93296 0.97461 1.21716 0.97136 0.96749 0.98113 1.18844 0.93089 0.91740 0.93411 1.19930 1.13209 1.15774 0.99457 0.88216 1.26955 1.00488 0.92223 0.98645 1.69830 1.32075 1.22015 1.19343 0.85032 0.76886 0.79130 0.77792 1.18568 1.19039 1.17618 1.22622 0.97125 0.99821 0.96923 1.66255 1.12189 1.16808 1.26211 1.17750 0.97238 0.91705 0.95273 1.91383 1.62297 1.91873 1.67009 1.20340 0.94076 0.95610 1.07736 0.92740 0.91445 0.92790 0.90815 0.90874 0.91550 0.91482 0.90657 0.90729 0.82052 0.81771 0.85623 0.84670 0.89191 0.82448 0.87800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.98 0.71 -1.00 16 2 C -0.12 -1.38 5.93 30.60 0.18 -1.20 16 3 C -0.12 -2.02 5.58 30.59 0.17 -1.85 16 4 C 0.05 1.01 4.74 71.98 0.34 1.35 16 5 O -0.34 -10.34 10.13 -92.44 -0.94 -11.28 16 6 C 0.13 4.25 6.68 22.48 0.15 4.40 16 7 C -0.20 -5.51 9.03 22.41 0.20 -5.31 16 8 C -0.07 -1.92 10.03 22.22 0.22 -1.70 16 9 C -0.15 -5.52 9.53 22.49 0.21 -5.30 16 10 C 0.00 -0.19 5.33 -20.06 -0.11 -0.30 16 11 C -0.10 -4.77 5.48 -19.95 -0.11 -4.88 16 12 C -0.11 -5.71 8.28 23.12 0.19 -5.52 16 13 C 0.03 1.75 5.59 -21.22 -0.12 1.63 16 14 C -0.46 -21.95 9.08 23.45 0.21 -21.74 16 15 H 0.10 4.44 7.90 -2.91 -0.02 4.42 16 16 C 0.03 1.57 5.19 85.24 0.44 2.01 16 17 N -0.81 -38.47 10.90 21.82 0.24 -38.23 16 18 Si 0.99 33.64 29.59 68.60 2.03 35.67 16 19 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 20 H -0.27 -8.65 7.11 99.48 0.71 -7.94 16 21 H -0.25 -8.34 7.11 99.48 0.71 -7.63 16 22 C 0.00 -0.16 10.96 85.37 0.94 0.78 16 23 N -0.50 -26.55 10.34 -193.74 -2.00 -28.55 16 24 C 0.13 6.98 8.30 85.08 0.71 7.69 16 25 F -0.15 -7.41 15.90 44.97 0.72 -6.69 16 26 C -0.16 -6.58 8.81 22.58 0.20 -6.38 16 27 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.08 1.28 7.66 -2.39 -0.02 1.26 16 35 H 0.07 1.28 7.66 -2.39 -0.02 1.26 16 36 H 0.16 3.01 6.28 -2.91 -0.02 3.00 16 37 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 38 H 0.13 4.37 8.04 -2.91 -0.02 4.35 16 39 H 0.14 6.91 6.20 -2.91 -0.02 6.90 16 40 H 0.30 12.66 8.30 -92.71 -0.77 11.89 16 41 H 0.16 7.02 8.06 -2.91 -0.02 6.99 16 42 H 0.10 4.66 7.79 -2.91 -0.02 4.64 16 Total: -1.00 -62.00 359.56 5.62 -56.38 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 1.03 Total: 30.01 kcal Atomic # 6 Polarization: -41.86 SS G_CDS: 4.55 Total: -37.31 kcal Atomic # 7 Polarization: -65.02 SS G_CDS: -1.76 Total: -66.79 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -0.94 Total: -11.28 kcal Atomic # 9 Polarization: -7.41 SS G_CDS: 0.72 Total: -6.69 kcal Atomic # 14 Polarization: 33.64 SS G_CDS: 2.03 Total: 35.67 kcal Total: -62.00 5.62 -56.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241295021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.609 kcal (2) G-P(sol) polarization free energy of solvation -62.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds