Wall clock time and date at job start Tue Mar 31 2020 10:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35794 * 116.99879 * 2 1 4 4 C 1.38542 * 120.11455 * 0.02562 * 3 2 1 5 5 C 1.38393 * 120.04440 * 180.02562 * 4 3 2 6 6 F 1.35103 * 119.86516 * 180.02562 * 5 4 3 7 7 C 1.38692 * 120.26856 * 0.02562 * 5 4 3 8 8 C 1.50705 * 119.88493 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47132 * 119.99571 * 8 7 5 10 10 C 1.52995 * 109.47192 * 240.00000 * 8 7 5 11 11 C 1.37881 * 120.23254 * 0.27333 * 7 5 4 12 12 C 1.39431 * 119.94608 * 359.45594 * 11 7 5 13 13 C 1.48143 * 120.13177 * 180.27080 * 12 11 7 14 14 C 1.40006 * 119.61686 * 47.12106 * 13 12 11 15 15 C 1.38637 * 119.46254 * 179.76925 * 14 13 12 16 16 C 1.38330 * 118.69780 * 0.49315 * 15 14 13 17 17 C 1.40668 * 119.20275 * 359.75004 * 16 15 14 18 18 C 1.41357 * 119.76433 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99767 * 0.02562 * 18 17 16 20 20 C 1.40003 * 120.00150 * 180.02562 * 18 17 16 21 21 N 1.30751 * 120.00366 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00115 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47100 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47502 * 119.99832 * 22 20 18 25 25 H 1.48503 * 109.47115 * 240.00055 * 22 20 18 26 26 N 1.32272 * 119.61540 * 227.38845 * 13 12 11 27 27 H 1.08999 * 109.47334 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46850 * 300.00059 * 1 2 3 29 29 H 1.09002 * 109.47535 * 59.99568 * 1 2 3 30 30 H 1.08004 * 119.97811 * 0.04323 * 4 3 2 31 31 H 1.09001 * 109.46781 * 0.02562 * 8 7 5 32 32 H 1.08997 * 109.47424 * 300.00337 * 9 8 7 33 33 H 1.08996 * 109.47313 * 179.97438 * 9 8 7 34 34 H 1.09006 * 109.46465 * 60.00310 * 9 8 7 35 35 H 1.08993 * 109.47544 * 300.00031 * 10 8 7 36 36 H 1.09004 * 109.47096 * 60.00334 * 10 8 7 37 37 H 1.09005 * 109.47098 * 179.97438 * 10 8 7 38 38 H 1.07997 * 120.02710 * 179.72749 * 11 7 5 39 39 H 1.08005 * 120.26530 * 0.02562 * 14 13 12 40 40 H 1.08004 * 120.65470 * 180.24836 * 15 14 13 41 41 H 1.08004 * 120.39544 * 179.72613 * 16 15 14 42 42 H 0.96993 * 120.00276 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.2932 2.3734 0.0005 5 6 1.9230 3.6057 0.0000 6 9 1.1858 4.7379 0.0010 7 6 3.3077 3.6831 -0.0016 8 6 3.9845 5.0296 -0.0028 9 6 4.8593 5.1618 1.2455 10 6 4.8565 5.1611 -1.2530 11 6 4.0674 2.5324 -0.0084 12 6 3.4426 1.2859 -0.0021 13 6 4.2548 0.0470 -0.0033 14 6 5.3314 -0.0754 0.8834 15 6 6.0864 -1.2382 0.8829 16 6 5.7562 -2.2442 -0.0073 17 6 4.6664 -2.0602 -0.8774 18 6 4.3189 -3.0803 -1.7923 19 1 4.8892 -3.9969 -1.8212 20 6 3.2354 -2.9022 -2.6609 21 7 2.5446 -1.7927 -2.6257 22 14 2.7758 -4.2505 -3.8694 23 1 3.7066 -5.3965 -3.7100 24 1 1.3857 -4.7005 -3.6039 25 1 2.8701 -3.7260 -5.2555 26 7 3.9578 -0.9285 -0.8457 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 0.2145 2.3185 0.0017 31 1 3.2294 5.8157 -0.0017 32 1 4.2381 5.0682 2.1362 33 1 5.3492 6.1355 1.2444 34 1 5.6144 4.3756 1.2448 35 1 5.6115 4.3750 -1.2537 36 1 4.2332 5.0670 -2.1423 37 1 5.3457 6.1352 -1.2541 38 1 5.1454 2.5966 -0.0141 39 1 5.5692 0.7279 1.5651 40 1 6.9185 -1.3547 1.5615 41 1 6.3286 -3.1597 -0.0342 42 1 1.7938 -1.6695 -3.2272 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241785462.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:19 Heat of formation + Delta-G solvation = -36.073709 kcal Electronic energy + Delta-G solvation = -26359.078158 eV Core-core repulsion = 22604.445338 eV Total energy + Delta-G solvation = -3754.632820 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.66471 -39.79268 -37.92794 -37.52337 -34.63991 -33.57752 -31.56193 -30.38905 -29.14724 -28.54290 -27.04728 -26.84433 -25.48760 -23.11441 -22.79344 -21.34381 -20.61185 -19.45170 -18.05442 -17.42559 -16.64123 -15.82513 -15.57718 -15.51405 -14.93161 -14.80224 -14.54397 -14.17604 -14.07331 -13.93876 -13.65257 -13.36657 -13.19549 -12.68542 -12.49377 -12.24499 -12.12503 -12.05218 -11.71974 -11.55472 -11.20194 -11.14324 -11.05290 -10.94538 -10.71357 -10.67775 -10.57934 -10.36822 -10.27626 -9.86799 -9.37508 -8.63681 -8.14152 -7.81386 -7.53718 -7.17371 -6.33640 -4.47331 1.41874 1.70765 2.74760 3.03015 3.10180 3.13942 3.21188 3.79564 3.96809 4.02020 4.54332 4.75328 4.79979 4.91555 5.16624 5.28943 5.29195 5.40360 5.51146 5.54522 5.61685 5.70091 5.83849 5.88990 5.92042 5.93630 5.95136 6.05546 6.13010 6.26228 6.31762 6.33368 6.42437 6.52689 6.65057 6.69285 6.78787 6.94774 7.13012 7.13622 7.34847 7.59739 7.75270 7.91841 8.07227 8.24669 8.69921 8.95422 10.10987 10.34843 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014268 B = 0.004671 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.918030 B = 5993.388306 C = 6916.628162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.259 6.259 3 C 0.190 3.810 4 C -0.256 4.256 5 C 0.127 3.873 6 F -0.144 7.144 7 C -0.158 4.158 8 C -0.048 4.048 9 C -0.143 4.143 10 C -0.144 4.144 11 C -0.039 4.039 12 C -0.046 4.046 13 C 0.183 3.817 14 C -0.301 4.301 15 C -0.060 4.060 16 C -0.276 4.276 17 C 0.255 3.745 18 C -0.431 4.431 19 H 0.082 0.918 20 C 0.070 3.930 21 N -0.701 5.701 22 Si 0.901 3.099 23 H -0.261 1.261 24 H -0.274 1.274 25 H -0.274 1.274 26 N -0.448 5.448 27 H 0.096 0.904 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.135 0.865 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.136 0.864 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.226 9.744 3.675 10.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.169 6.169 3 C 0.141 3.859 4 C -0.276 4.276 5 C 0.107 3.893 6 F -0.123 7.123 7 C -0.159 4.159 8 C -0.067 4.067 9 C -0.200 4.200 10 C -0.201 4.201 11 C -0.058 4.058 12 C -0.048 4.048 13 C 0.037 3.963 14 C -0.325 4.325 15 C -0.084 4.084 16 C -0.299 4.299 17 C 0.130 3.870 18 C -0.462 4.462 19 H 0.100 0.900 20 C -0.156 4.156 21 N -0.322 5.322 22 Si 0.726 3.274 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.200 1.200 26 N -0.160 5.160 27 H 0.114 0.886 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.152 0.848 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.153 0.847 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.062 9.711 2.967 10.605 hybrid contribution -0.018 -0.434 0.029 0.436 sum -3.081 9.276 2.995 10.223 Atomic orbital electron populations 1.23002 0.80016 1.03606 1.00158 1.86499 1.19511 1.24537 1.86389 1.18756 0.91337 0.83967 0.91811 1.20963 1.00587 0.91129 1.14931 1.17153 0.88406 0.81176 1.02550 1.91418 1.77183 1.49663 1.94047 1.19495 0.91112 0.96196 1.09078 1.19908 0.97416 0.93412 0.95930 1.21857 0.99560 1.01566 0.97021 1.21860 0.99634 1.01520 0.97071 1.20647 0.99757 0.89144 0.96211 1.18181 0.89499 0.93159 1.03933 1.19430 0.91471 0.92262 0.93143 1.21135 1.03244 1.00244 1.07870 1.20739 0.97173 0.93666 0.96786 1.21774 1.04135 1.00175 1.03820 1.18546 0.87605 0.90388 0.90501 1.19587 1.11221 1.01131 1.14277 0.89961 1.26025 0.95897 0.96064 0.97621 1.70194 1.11687 1.22231 1.28045 0.86377 0.79104 0.81696 0.80262 1.18506 1.19970 1.19973 1.68921 1.27413 0.99596 1.20073 0.88587 0.93677 0.93055 0.84770 0.90556 0.92662 0.92651 0.92162 0.92140 0.92580 0.92659 0.84674 0.88810 0.88631 0.88474 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.26 -5.46 9.38 -19.10 -0.18 -5.64 16 3 C 0.19 3.81 6.66 -38.84 -0.26 3.55 16 4 C -0.26 -4.38 9.01 -39.41 -0.35 -4.73 16 5 C 0.13 2.08 7.24 -39.36 -0.29 1.80 16 6 F -0.14 -2.24 16.17 2.25 0.04 -2.21 16 7 C -0.16 -2.49 4.79 -104.58 -0.50 -2.99 16 8 C -0.05 -0.62 3.07 -91.77 -0.28 -0.90 16 9 C -0.14 -1.60 9.01 37.16 0.33 -1.27 16 10 C -0.14 -1.71 9.00 37.16 0.33 -1.38 16 11 C -0.04 -0.68 8.07 -39.27 -0.32 -1.00 16 12 C -0.05 -0.97 5.63 -104.75 -0.59 -1.56 16 13 C 0.18 4.43 6.08 -82.95 -0.50 3.93 16 14 C -0.30 -6.78 9.48 -38.77 -0.37 -7.15 16 15 C -0.06 -1.33 10.15 -39.40 -0.40 -1.73 16 16 C -0.28 -6.79 9.83 -38.63 -0.38 -7.17 16 17 C 0.25 6.94 6.55 -85.01 -0.56 6.38 16 18 C -0.43 -11.45 9.14 -37.73 -0.34 -11.79 16 19 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 20 C 0.07 1.75 5.50 -17.35 -0.10 1.66 16 21 N -0.70 -18.23 11.46 55.55 0.64 -17.59 16 22 Si 0.90 18.46 29.56 -169.99 -5.02 13.44 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 26 N -0.45 -12.13 7.04 -7.69 -0.05 -12.18 16 27 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.04 0.58 7.66 -51.93 -0.40 0.18 16 29 H 0.05 0.73 7.66 -51.93 -0.40 0.33 16 30 H 0.13 1.98 6.30 -52.48 -0.33 1.65 16 31 H 0.08 0.96 7.11 -51.93 -0.37 0.59 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.68 7.39 -51.93 -0.38 0.30 16 35 H 0.06 0.74 7.36 -51.93 -0.38 0.36 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.14 2.20 6.99 -52.49 -0.37 1.84 16 39 H 0.09 1.86 7.97 -52.48 -0.42 1.44 16 40 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 41 H 0.10 2.21 8.06 -52.48 -0.42 1.78 16 42 H 0.27 6.39 8.29 -40.82 -0.34 6.05 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -29.36 355.33 -8.36 -37.72 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.55 Total: 4.04 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -3.58 Total: -22.93 kcal Atomic # 7 Polarization: -30.36 SS G_CDS: 0.58 Total: -29.78 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.18 Total: -5.64 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.44 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.36 -8.36 -37.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241785462.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.647 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds